Gene detail

Detailed information of evm.model.contig_22709.1 in Platygyra sinensis

Genomic Location: contig_22709:5186...15195
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_22709.1

ATGTATTATCCCTTAGCACTGTTAGTGCTACTGGCAAGTGCTGCTGGTGATGGGAATTTTAGTTTTAAAAAGACACATATTCAAGTAGAAGAAGCGCCATTTACCCAAGCAGTTTTTGGCATTTCTCGGACAGGGGCAACAACAGGCACTGTGGATGTTACTTGCAAGATGAATGCCTCTGCTCAAGATACAGATGTGATTGGTACTTCACAAAACATACAATTCCAAGCAGGTGTCACCTCTGGGGAGTGTAGATTTACCATAGCAGATGATGAAATCCCAGAAGCCAATGAAACATTTGCTATTGAACTGATTGTGACAGGATCTGGAATTGTGGTGCCACCCTCAGTAGCATATTTAACTATATTAGCCAATGATGATGCATTTGGAATCATTGGTTTTAACGAGACTGGTCCACTCCTGGTGGATGAACTTTCAAGTCAAGTTAACACAAGAAACATCAAGCTTACCCGTAAGGCTGGTCTGATTGGTATGGTGCAAGTATCTTGGAAAGTTACAAGTGGACCAAACAATGGATTAGATGACTTTATCAGCAACAGTGGGGTGGTTGACTTTTCAGATGGACAGAGCATGGCAAATCTTGCCATCAAAGTGAAGCCAGATAATGTGGCAGAAAATGAAGAATCGTTCACTTTGACTCTGGAATCTGCAAGTGGAGGAGCTACACTGGAGCCAAGTGCCAAGCAAATTATTGTCAAAATACCTGCCAATGATGCTCCTTTACAGTTTACACTTGATCATTTTACAGTCCCTGAGAATCAGACTTCTGTTGAGGTTGAAGTTTCCAGAGGACTTGGTGCCGATGGTGTCACTGAAATTGGTCCCGTAAATGAGATTACAACTGTAGACTGGTATCTAGCTTCAGGTTCTGCCATGGCAGGGAAGGATTATCATGATGATAAGGGTACATTAACTTTTCAAGCTCGTGAAACAAAAAAGATGATCACTATTCGATTGATTAATGATGAAGTACCAGAACAAGCCGAGAATTTTACTGTTCATTTGGTAAATGCAAGTCAAAATGCTTACATTAAGCCACCTGGTATGGCTACTGTTGTTCTCTCACCAAATGATGATCAGCATGGAGTTATTGCATTTGGTCAATATCCAAGCATCTTAGATGAAGATATGACTGGCACATTTTATGTGAATCGCAGTGCTGGTACCTTTGGAGATGTCACAGTCTCTTGGAAAATCCTTGGCAGTGATGCAAGCTCTGTTTTTGAGACAACATCTGGAGAGTTAAGGTTCTCCCCTGGAGACAATCTTTTGTCATTCCAAGTCACTGTCAGCCCAGACTCTATCCCAGAAGAGAGTAAAGAGTATAATATACAGCTTTACAACGTCACAGGTGGTGCAAGGCTTCATAACACTCTGTCAGCACAAAGAGCCAATTTCTTTGTTAGTGATAGTGATGATGTTTATGGAGTCTTTGAATTTGCAGCAGACAGTGAGCAGAGAATAAACATGGCCACGGACGGCTCTTTGTCACTAGTGAAGAAAATCGTAGAGCTCAGTCTTTTCTCAACGACTGGCAAGCAACGGCGAGTTGTTTTTCATTTCTCGTCAAATAAAATGGCATCAAGATTTAAGGATTTAGATGTGTCTGTGGAGGATTTCATCTCAGAACAAGAAAACGAAAGCACTAAAAAGAAAACTTTGCAAAATGTAGCCGTGCTGCAACAACTCCTAGCATCGAAAAACGAGGAACGAAAACTTGAAGAGATCCCTCCAGAGGAGCTGAATGAATATTTGAGCGAATTCATCATAACAGTCCGCACCAAAGACAAACAAGAAGAATACGAACCAAGCTCCCTTCGAGGATTCATTGCAAGCTTTGAGAGATATCTCAAAAAGAAAAATTACGGTCACAGCATCATCAAAGACCTGCAATTCGAGAAAACAAGAAAAGCTTTGTCATCCAAGCAGAAAGATTTGAAACGCAAAGGGAAAGGCAATAAACCAAATGCATCTGTCGCTATCAGTGAAGACGACATACAAGTTCTCTACGAGAAAAAACTTCTAGGAACTGAGAGACCTGAAGCTCTGCTGAACACACTCTGGTTGAATAACACAACTCAGTTCGGTCTTCGCGGCTGCAAAGAGCACAGGGACATGTGCTGGGGCGACGTGAAGCTCAAGAAAACATCAACTGGAGTGGAATTTCTTGAATACGGAGAACGACAAACAAAAACCCGCCTCGGAGATGACACGAACGATGTTAGGCCGATAGCTCCAAAAATGTTTTCACTTCCAAATAGCGACAGATGTCCAGTGTTGACTTACAAGGTTTTCGCCGAAAAGAGACCGACTCAAATGAACTTTGACGAGGCGCCGTTTTATCTAGCGGTAAACAACATCAAGACAGACTCGCTCGACAAAAAGCCGTGGTTCAAACAGTCTCCTGTTGGTGTGAACAAACTCAATTCTATTATGAAGGTCATGTCAGAAAAAGCCGAACTTAATAAACCTCGACTTAAAAATCACAGTGGTAGAAAGACAATGATGCAGACCTTGGTGAACGAAGAAATCCCTCCCACTGACATAATTCAACTCTCAGGTCACAGAAATCTTCAAAGCGTTAACAACTACGCGACTGTTTCTGAAAAACAACAGATGAAAATGTCACGTACGCTTAGTGCATTTACCACTGGAATTGTTTCTAAAAAAGATGCCCCAAGAGAGGAAAGTTCGTGTGGAAGCTCAAGTGAAAATAACAAAATGCTTGTGAGCCAGCAGCGCACAGAACACACTGTCACGTCTTCCACTTGTGGTCAACAACAAGCGCTACAAATTTTCGCTGGAGCTACGATAAGCGGTGGAAACATTCATGTTTCGATCAACACACTCAACAAATCACCTATATTGCCGACAAGCCCGAAGCCTAAATATCAAAGGTACAAAAGACTCTTAAGTTCTGATTCTGAGTCCGACTAG

Transcript

evm.model.contig_22709.1

ATGTATTATCCCTTAGCACTGTTAGTGCTACTGGCAAGTGCTGCTGGTGAtgggaattttagttttaaaaagacACATATTCAAGTAGAAGAAGCGCCATTTACCCAAGCAGTTTTTGGCATTTCTCGGACAGGGGCAACAACAGGCACTGTGGATGTTACTTGCAAGATGAATGCCTCTGCTCAAGATACAGATGTGATTGGTACTTCACAAAACATACAATTCCAAGCAGGTGTCACCTCTGGGGAGTGTAGATTTACCATAGCAGATGATGAAATCCCAGAAGCCAATGAAACATTTGCTATTGAACTGATTGTGACAGGATCTGGAATTGTGGTGCCACCCTCAGTAGCATATTTAACTATATTAGCCAATGATGATGCATTTGGAATCATTGGTTTTAACGAGACTGGTCCACTCCTGGTGGATGAACTTTCAAGTCAAGTTAACACAAGAAACATCAAGCTTACCCGTAAGGCTGGTCTGATTGGTATGGTGCAAGTATCTTGGAAAGTTACAAGTGGACCAAACAATGGATTAGATGACTTTATCAGCAACAGTGGGGTGGTTGACTTTTCAGATGGACAGAGCATGGCAAATCTTGCCATCAAAGTGAAGCCAGATAATGTGGCAGAAAATGAAGAATCGTTCACTTTGACTCTGGAATCTGCAAGTGGAGGAGCTACACTGGAGCCAAGTGCCAAGCAAATTATTGTCAAAATACCTGCCAATGATGCTCCTTTACAGTTTACACTTGATCATTTTACAGTCCCTGAGAATCAGACTTCTGTTGAGGTTGAAGTTTCCAGAGGACTTGGTGCCGATGGTGTCACTGAAATTGGTCCCGTAAATGAGATTACAACTGTAGACTGGTATCTAGCTTCAGGTTCTGCCATGGCAGGGAAGGATTATCATGATGATAAGGGTACATTAACTTTTCAAGCTCGTGAAACAAAAAAGATGATCACTATTCGATTGATTAATGATGAAGTACCAGAACAAGCCGAGAATTTTACTGTTCATTTGGTAAATGCAAGTCAAAATGCTTACATTAAGCCACCTGGTATGGCTACTGTTGTTCTCTCACCAAATGATGATCAGCATGGAGTTATTGCATTTGGTCAATATCCAAGCATCTTAGATGAAGATATGACTGGCACATTTTATGTGAATCGCAGTGCTGGTACCTTTGGAGATGTCACAGTCTCTTGGAAAATCCTTGGCAGTGATGCAAGCTCTGTTTTTGAGACAACATCTGGagagttaaggttctcccctgGAGACAATCTTTTGTCATTCCAAGTCACTGTCAGCCCAGACTCTATCCCAGAAGAGAGTAAAGAGTATAATATACAGCTTTACAACGTCACAGGTGGTGCAAGGCTTCATAACACTCTGTCAGCACAAAGAGCCAATTTCTTTGTTAGTGATAGTGATGATGTTTATGGAGTCTTTGAATTTGCAGCAGACAGTGAGCAGAGAATAAACATGgccacggacggctctttgtcactagtgaagaaaatcgtagagctcagtcttttctcaacgactggcaagcaacggcgagttgtttttcatttctcgtcaaataaaatggcatcaagatttaaggatttagatgtgtctgtggaggatttcatctcagaacaagaaaacgaaagcactaaaaagaaaactttgcaaaatgtagcCGTGCTGCAACAACTCCTAGCATCGAAAAACGAGgaacgaaaacttgaagagatccctccagaggagctgaatgaatatttgagcgaattcatcataacagtccgcaccaaagacaaacaagaagaatacgaaccaagctcccttcgaggattcattgcaagctttgagagatatctcaaaaagaaaaattacggtcacagcatcatcaaagacctgcaattcgagaaaacaagaaaagctttgtcatccaagcagaaagatttgaaacgcaaagggaaaggcaataaaccaaatgcatctgtcgctatcagtgaagacgacatacaagttctctacgagaaaaaacttctaggaactgagagacctgaagctctgctgaacacactctggttgaataacacaactcagttcggtcttcgcggctgcaaagagcacagggacatgtgctggggcgacgtgaagctcaagaaaacatcaactggagtggaatttcttgaatacggagaacgacaaacaaaaacccgcctcggagatgacacgaacgatgttaggccgatagctccaaaaatgttttcacttccaaatagcgacagatgtccagtgttgacttacaaggttttcgccgaaaagagaccgactcaaatgaactttgacgaggcgccgttttatctagcggtaaacaacatcaagacagactcgctcgacaaaaagccgtggttcaaacagtctcctgttggtgtgaacaaactcaattctattatgaaggtcatgtcagaaaaagccgaacttaataaacctcgacttaaaaatcacagtggtagaaagacaatgatgcagaccttggtgaacgaagaaatccctcccactgacataattcaactctcaggtcacagaaatcttcaaagcgttaacaactacgcgactgtttctgaaaaacaacagatgaaaatgtcacgtacgcttagtgcatttaccactggaattgtttctaaaaaagatgccccaagagaggaaagttcgtgtggaagctcaagtgaaaataacaaaatgcttgtgagccagcagcgcacagaacacactgtcacgtcttccacttgtggtcaacaacaagcgctacaaattttcgctggagctacgataagcggtggaaacattcatgtttcgatcaacacactcaacaaatcacctatattgccgacaagcccgaagcctaaatatcaaaggtacaaaagactcttaagttctgattctgagtccgactag

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000341 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12012 all species →	DUF3504	Domain of unknown function (DUF3504)	Family	Interproscan
PF03160 all species →	Calx-beta	Calx-beta domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021893 all species →	Domain	Domain of unknown function DUF3504	Interproscan
IPR038081 all species →	Homologous_superfamily	CalX-like domain superfamily	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR003644 all species →	Domain	Na-Ca exchanger/integrin-beta4	Interproscan
IPR026919 all species →	Family	Adhesion G-protein coupled receptor V1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46682 all species →	ADHESION G-PROTEIN COUPLED RECEPTOR V1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0007154 all species →	Biological Process	cell communication	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0001965 all species →	Molecular Function	G-protein alpha-subunit binding	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007194 all species →	Biological Process	negative regulation of adenylate cyclase activity	Interproscan
GO:0010855 all species →	Molecular Function	adenylate cyclase inhibitor activity	Interproscan
GO:0071277 all species →	Biological Process	cellular response to calcium ion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23383	FREM3; FRAS1-related extracellular matrix protein 3	-	Structural proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Platygyra sinensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Platygyra sinensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →