Gene detail

Detailed information of evm.model.contig_23211.2 in Platygyra sinensis

Genomic Location: contig_23211:16251...25402
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_23211.2

ATGTTTCTTCTCCTGCCTGGATGGGATGCTGTTCCTCTGCAGGGTTACACCCACATTAAATTTGCCAGTGTCCATTGGTACTCATGGGCTAAGAGAGGCACTGTGAGAATTAAGTCTTTTACCCAAGAACACAACACAGTGGCCCTGCCCAGGGCTGAAACCCAGACTGCTGGATCCAGAGACAAATGCATAGTAGAGGGTGGAACTAAAAGAGATTACAAGACAAATGGAGAGGAAATACAATTCTCTTCAGTTCTGCCAACTCCCAATTCCCTCTGTAGGCAACTTCAAGACAAGTTTGTTGCCCTTCTTCGACTGCTGTTGTTGTGGGACCCCCAAGCACGGGGAGGATCAATTCTTGAAAGTGGCAAGAGAGAGTGTTTTGATGTTCTTGAAAAGATCATCAATACTGTGATAGTCCGTGTGTTCTCAATCAGCTCAGCAGTGGCGATTCCATTTGAAGTGTTACCAACTGAAACGATAGAGGATCTGCAAGTGAAATTAGCTGAAGTAACTGGAGTCGATGTTAAGGAACAGGAATTGTTATTGGCTTCAGGGCAGGCTGTGAAACCAAAAACACTTGTATTGGATTGCATCAAGAATAATCAGGTGGGAGATGATTGCACTCTGTTCCTGTTGCCTACAAGTGTTGAACCAAAATCCACTCGGCCATTGTACACTATGCCACCTACAGTTCAAGGAATGGGGTTTAGAAATGAAATATGTGGAACAAGTTACTCAGGATATCAAGGAGATGCAGTTAGTTTATTGGATGAGGAGACAGTCTATCCTAAAGATTCAAAACAATTTTATTTTCAGGAATTGAAAAGGGCCTTTGCTCAGGGAGTGAACTTTTGCCGCGAGCAGACAAAGATAAACCAGCTACTGATTGAAGGTTTTAGAGCGGCACAGATTTCATTGTTGGTTTTGAATTCCAAACTTGGACAGCTCAAGTCTGAACTTCTGACTGAATCCAACAAACTGGAGGCAAAAATTGAATTTTTCAACTCTAGTTTACAGACTGATTTCGAAGTTTATGCTGACAATGTCAACCTTGTAAAAAATGATAAACTGCTTAGAAGCTGGAAACGGGCACAGAAAAAAGTGGAGTCGTTTCAAAACGAAAGACATTCTTCAACCAAGAAAAGGCATTCTTCTCCCCAAAAAAGACATTCCTCTACCAAGGAAAGACTTTCTTCTACCAAGGAAAGACATTCCCCAACCAAGAAAAGACATTCTTCTACCAAGAGAGGACATTCTTCTACCAAGAAAAGACATTCTTCCACCAAGAGAGGACATTCTTCTATTAAAAAAGACATTCTTCCACCAAGAGAGGGCATTCTCAACCAAGAAAAGACATTCTTCTACCAAGAAACATTCTTTTATCAAGAAAAGACATTCTTCAGCCAAGAAATACATTCTTCAACCAAGAAAAGACATTCTTCAACCAAGAAATACATTCTTCCATCAAGAAAAGACATTCTTCTATCAAGAAATACATTCTTCAACCAAGAAAAGACATTCTTCTATCAAGAAATACATTCTTCAACCAAGAAAAGACATTCTTCTACCAAGAGAGGACATTCTTCTACCAAGAAAAGACATTCTTTAACCAAGAAAAGACATTCTTCTACCAAGAGAGGACATTCTTCTACCAAGAAAAGACATTCTTCTACCAAGAAAAGACATTCTTCTATCAAGAGAAGACATTCTTCTATCAAGAAACACATTCTTCAATCAAGAGAAGACATTCTTCTTTCAAGAAACACATTCTTCAACCATGAAAAGACATTCTTCTTTCAAGAAAGACATTCTTCTACCAAGAGAGGACATTCTTCTATCAAGAAATACATTCTTCTATCAAGAAAAGACGTTCTTCAACCAGGAAATACATTCTTCAACCAAGAAATACATTATTCAACCAAGAAAAGACATTCTTCTGCCAAGAAACACATTCTTCTTTCAAGAAAAGACGTTCTTCTACCAAGAAACACATTCTTCTATCAAGAAAAGACGTTCTTCTATCAAGAAACACATTCTTCAACCATGAAAAGACATTTTTCTTTCAAGAAATACATTCTTCAACCAAGAAAAGACATTCTTCTACCAAGAAACATTCTTTTATCAAGAAAAGACATTCTTCAGCCAAGAAATACATTCTTCAACCAAGAAAAGACATTCTTCAACCAAGAGAGGACATTCTTCTACCAAGAAAAGACATTCTTCTATCAAGAGAAGACATTCTTCTATCAAGAAACACATTCTTCAATCAAGAGAAGACATTCTTCCTTCAAGAAACACATTCTTCAACCATGA

Transcript

evm.model.contig_23211.2

ATGTTTCTTCTCCtgcctggatgggatgctgttCCTCTGCAGGGTTACACccacattaaatttgccagtgtCCATTGGTACTCATGGGctaagagaggcactgtgagaattAAGTCttttacccaagaacacaacacagtggcCCTGCCCAGGGCTGAAACCCAGACTGCTGGATCCAGAGACAAATGCATAGTAGAGGGTGGAACTAAAAGAGATTACAAGACAAATGGAGAGGAAATACAATTCTCTTCAGTTCTGCCAACTCCCAATTCCCTCTGTAGGCAACTTCAAGACAAGTTTGTTGCCCTTCTTCGACTGCTGTTGTTGTGGGACCCCCAAGCACGGGGAGGATCAATTCTTGAAAGTGGCAAGAGAGAGTGTTTTGATGTTCTTGAAAAGATCATCAATACTGTGATAGTCCGTGTGTTCTCAATCAGCTCAGCAGTGGCGATTCCATTTGAAGTGTTACCAACTGAAACGATAGAGGATCTGCAAGTGAAATTAGCTGAAGTAACTGGAGTCGATGTTAAGGAACAGGAATTGTTATTGGCTTCAGGGCAGGCTGTGAAACCAAAAACACTTGTATTGGATTGCATCAAGAATAATCAGGTGGGAGATGATTGCACTCTGTTCCTGTTGCCTACAAGTGTTGAACCAAAATCCACTCGGCCATTGTACACTATGCCACCTACAGTTCAAGGAATGGGGTTTAGAAATGAAATATGTGGAACAAGTTACTCAGGATATCAAGGAGATGCAGTTAGTTTATTGGATGAGGAGACAGTCTATCCTAAAGattcaaaacaattttattttcaggAATTGAAAAGGGCCTTTGCTCAGGGAGTGAACTTTTGCCGCGAGCAGACAAAGATAAACCAGCTACTGATTGAAGGTTTTAGAGCGGCACAGATTTCATTGTTGGTTTTGAATTCCAAACTTGGACAGCTCAAGTCTGAACTTCTGACTGAATCCAACAAACTGGAggcaaaaattgaatttttcaactCTAGTTTACAGACTGATTTCGAAGTTTATGCTGACAATGTCAACCTTGTAAAAAatGATAAACTGCTTAGAAGCTGGAAACGGGCACAGAAAAAAGTGGAGTCGTTTCAAAACGAAAGACAttcttcaaccaagaaaagGCATTCTTCTCCCCAAAAAAGACATTCCTCTACCAAGGAAAGACTTTCTTCTACCAAGGAAAGACATTCCCCAACCAAGAAAAGACATTCTTCTACCAAGAGAGGACATTCTTCTACCAAGAAAAGACATTCTTCCACCAAGAGAGGACATTCTTCTATTAAAAAAGACATTCTTCCACCAAGAGAGGGCATTCTCAACCAAGAAAAGACATTCTTCTACCAAGAAACATTCTTTTATCAAGAAAAGACATTCTTCAGCCAAGAAATACAttcttcaaccaagaaaagACATTCTTCAACCAAGAAATACATTCTTCCATCAAGAAAAGACATTCTTCTATCAAGAAATACAttcttcaaccaagaaaagACATTCTTCTATCAAGAAATACAttcttcaaccaagaaaagACATTCTTCTACCAAGAGAGGACATTCTTCTACCAAGAAAAGACATTCTTTAACCAAGAAAAGACATTCTTCTACCAAGAGAGGACATTCTTCTACCAAGAAAAGACATTCTTCTACCAAGAAAAGACATTCTTCTATCAAGAGAAGACATTCTTCTATCAAGAAACACATTCTTCAATCAAGAGAAGACATTCTTCTTTCAAGAAACACATTCTTCAACCATGAAAAGACATTCTTCTTTCAAGAAAGACATTCTTCTACCAAGAGAGGACATTCTTCTATCAAGAAATACATTCTTCTATCAAGAAAAGACGTTCTTCAACCAGGAAATACATTCTTCAACCAAGAAATACATTATTCAACCAAGAAAAGACATTCTTCTGCCAAGAAACACATTCTTCTTTCAAGAAAAGACGTTCTTCTACCAAGAAACACATTCTTCTATCAAGAAAAGACGTTCTTCTATCAAGAAACACATTCTTCAACcatgaaaagacatttttctttcaagaaatacattcttcaaccaagaaaagACATTCTTCTACCAAGAAACATTCTTTTATCAAGAAAAGACATTCTTCAGCCAAGAAATACAttcttcaaccaagaaaagACATTCTTCAACCAAGAGAGGACATTCTTCTACCAAGAAAAGACATTCTTCTATCAAGAGAAGACATTCTTCTATCAAGAAACACATTCTTCAATCAAGAGAAGACATTCTTCCTTCAAGAAACACATTCTTCAACCATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18397 all species →	IKBKB_SDD	IQBAL scaffold dimerization domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046375 all species →	Homologous_superfamily	IKBKB, scaffold dimerization domain superfamily	Interproscan
IPR041185 all species →	Domain	IKBKB, scaffold dimerization domain	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR051180 all species →	Family	Inhibitor of nuclear factor kappa-B kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22969 all species →	IKB KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008384 all species →	Molecular Function	IkappaB kinase activity	Interproscan
GO:0008385 all species →	Cellular Component	IkappaB kinase complex	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0033209 all species →	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0051092 all species →	Biological Process	positive regulation of NF-kappaB transcription factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_23211.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.