Gene detail

Detailed information of evm.model.contig_23285.7 in Platygyra sinensis

Genomic Location: contig_23285:19846...25316
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_23285.7

ATGAAGTTCTATTCATGGGACAAGTTTTCCTTGCTCTCGGTAACACCAATGAAGGCCATCGAAGTAGATCCCCGTGTACCAGGAATTCGTGACGAGATTCCGTTCCCGCAAGCAAAGCAGTGCTCTCCAGAGCTAGATTTCCCCAGTTGTCAGTTCAGTTCTCCGTTCAGCCAGAAATTACAGAGCTCGCAGGAAGAACCTATCGTCGCAGTAGAAACTTATCGTCACAGTTGTGGAAAAGAGTGGTGCTTCGTGGATCTTCCCAGGACGTTATCAAGGCCTCAGAGCAGATTCAAGAAGTCCGTGAAGAGAGTTTTTAAGAAGAAACTTTCGCCGTATAACTTACGAAGTAGAAAATCAGCCGTTCCCGTAGTTAAAGCCAGTACGCCTAAAGTAAATAGAGAAGTACAGGCTTCATTATCAGAGGAAGAGAATTGTACATTGTTGTGTGAATTACCATATTACCGAAGTTCCGTCCACGAGTCGACGCACGCATTAGTCTTAAACGAAGAAATCCAGCCAAGTAAATCCAGCCACGGCCCACGTTTGTCCACCGCATTTTCCAGTCCCAGTCAGGCCGATAGTACGAATAGGGAAGCCATAAATATCAGTATAGATCAGCGTCGAGAGCCGTCCATTGTTCACCCAAGTTCATCAAAACAATCCACTCCCTGTGGACCGCGTGAAGGAAGCGAAAGCAGTTCATTAGAAGACTTCACTCCGATTGACTCCAGGCACTTACAGAGTGGCCCTCAGATTGCATTAGAACTTGAAGAAATCAGCGAACCCGAACACGAAGAACCAGATCCAGAACAGAATTCAAGTTTCGCACACGACTCAAACCCGTTAATTAATTCACAGTTGATTTCTCATAATCAATTGAGAGAGCGAGATAGCATAAATTATAAAAAACCAAAACAAAAGAAAACAAAAACACGCAGCGACTCTGTTTCTAGCGCCGACTCCAGATATACAGAATCGGACGGTGAGCGAGAAGATTTGGAGGATAGCGAAAACGAAGGAAAAAGGAAAGAAAACGAGAAGTTCCTCCGTGTAAACGAGAGAGATCAACCCGACCTAACAGTCCTCATGGAAGCTGAAGCACTTAGAGAATTACAGGAGCAAATGGCTTCTCTACATACCCAGTTAACGTTACAACACAAGGCCCAGCAGCAAACAGCCACTGCATTACAGCAAGCACCAATTCCAGAAACGGTCAGTACGCGAAGGCCTGCTCCTTTCCATGGTTATGACTCTGAAGACGTGAACCGATGGTTGGATAAAATAGAAAATTATCTAACTCTTCGCCGTATCGACCTGACCAGTAGAACAGCGCAGGCGGAGCTGGTAATGAATCTTGCTGGACCCGCAGAAGATTTCTATTACTCCTTACCCCATGATCGGAAGACCACGTACGCTGAACTAAGAGATTCTTTGAGAGAGAGGTTCGCGAATGACAACCAAAGCTGGATAATTTGGCAGGCAGTCACCACTCGCCAACAAGGAGCAATAGAACCGTTGGATACTTATCTAACTGACTTAACGAACAAGTTTCGTCGATTGAATATCACTGACGCGGAAAAGATGCGTTATTTTGTCCAGGGATTACGGCCAGAAGTCAGAGAGACCGTGCTTTTAAGACAACCCAAGTCATTTCGTGAAGCCGAGGAGATAGCAAGATTGACGTGTGCAGTGAAAAACACCATGGGTTCTCCTGTAACTGGCATGACGCGACACCCAAGCCATCCGGCCACGGGAATAAGTGAAGCAAGCGCGACAAGCCGTGCGCTCCTAGCAAAAATAGAAGAGTTGAGCGAAAAACTACAACAGAAGAACGAGCCCGCTAAGGGGGAGCCTACGCCAACTGATGCCAAACTCTTAGCCAAGCTTGACGCATTGATTACAGGCCTCCCGGCTAACCCAGGTACGCAGCAAACGTCACCATTACAGGCAAAATTGAATGAGCTCGTACAGAAAACGCCATCCAGGGGTGAGAATACGGCGAATCTGGCGGCCTATGCAGAACCAAACAGGAGAGAAACGCCGGATTTCATGCGTGAAATTCGACGAATGGAAGATAAATTAGAAGAACTTTCTCGCCAAGTGGATGCTCGGATTAAGGGGCTAGCTCGACGAAATTCGCCAAATCAGGTTGAACAGCCGAGGCAGCGAACACGAGAAGGTCAGTCCATTTGTTATACTTGTGGAAGAGTTGGCCATATTCAGCAGAACTGTAATCAGAGATCTTCGCGAGAAGCCAGTTATTATGACCGATTCCAGTCGAACCAGCCGCGACGCCAGACGAATGAAAATTATCCTCCTCGCGCAGGTTATAGTCAAACACAGCGACGAAACGAATTGCCCTCTTTTAATCCAAGGAACCCTCGTATGGCTGTGCTCGATGAAGAGTATGCTGATGGTTTTGTCGCTCCTCTAGGACAAAATACAGATAGCCAAACAATTCCAGAAGAAAGTGGCCCGTTTCCAAGAATAAACTGGAGCGATGTTGGCTCGCAAATTGGCAAGGAACTAACGCGGCAGTTAACAACTACAACTCACTTGGTTCCAGAAGTAGTCCAACAAAATCCAGTAAAGAAAAATCAGTCGCCAACTGTGGTTATTGAAATCCCAAAACAAAGTGACCAGCAAACAATGAAGCAAAATAAAGCAGCTTGTGAAGTAATAACCGCTGCCCGTTCCGAGCGCGAGTTACCTGGAAACCTGGAAACTAAGCCCAGACCGGAAACACGTCAGCAGCTGGTCACCAGTCCACTGGATCTAAGCCAACTCAGTGAAACCCAGGTGAATGACCAACCACAAAGTCAGGAAAAACACCACCTCTCAGAAACTGTCCCATTTCCTAACGCTGTACGCCGTACTAAAAGCAGCATTACGGCAGATACAGATGTAATTGTTGATTTGTGCACAGAAGGAACCATCGAAAGGACCTCGGATCCAGATCTCTCGCAGCCAACACTTAGTCCTTCCGCCGGAAGCGAATCCACGGCAGTCAACAAAGACAGCTCGCCTAATTGTATGCCAGATCATACCCAGGCCACAGGTGAAACTCCACCGTTAGTTGCTGAACAATGTAATATTGCCAATAATCAAGCCAAGCCACGTGACTTGACAGTCACCGCCCAGCTGAATGGCCAGGATATTAAGTTACTCGTAGACATGGGAGCAGGCATGTCAGTAATTGATGAACAGTTTACACGAGACGTATATAAAGATGAACTACCCAAGTTACAGAGAAGCGCCCTGGTCAATGTCAAAACTGTCAGTGGTAAGGAACTGCCAGTGCTTGGAAAGATTCAAGTTACACTCGGAATAGCAGGGGGAAAATATCCCTGTGAGCTACAAGTTGTTAAGAACCTAACATACGAGGCTGTCGTAGGTCGAGATTTCTTGAGAGCTAATGGTGCAGTGATAAACTTTCGACAGGGAACTTTGCAATTTGACAACAGTCAGTCCAGAGGTGTTAATGCAGCCAGCATCGCTACGTTTTCACAGGCCAACAACAAACAGACACCGGAATTACTGGACGAAATTCGCCGTATGGAGAACGGTTTCACCGAAAAATTAGAAAATCTGAACCAACGAGTAGATCGCCTGAACCGCCTTGCCCGACGTAACAGCACCGTGTGTTATAGATGCGGACGCACTGGTCATATACAATATAACTGTTACAATTATTACCAGCCAGAAAGCCCGAGCCATGCACATTACAATCAGGAAGAAAATCATTGTCTCGCAACTAATCCCTCAGCGCACTTGTCCGCAGCTGCTCAGTATGCCCAGAGAGGCCTAAATCGTCATATCAACAAAGCAAAGAGTTCAGGGACAGTTGAACAAACATGTCATCAGCCAATACGCACTCGCAATCCAACATTTGAAGGAGAAGAAAATTCGTCAGATGATGCGTTAGCCGCCCTACCAAACGAAGAGACGATAAACAGCCCAGAAAAAGCAGCAAGCACCACACAATCACAACAGGAAGTGAAGCCGACAAGAGGCAATGAGCGAAAACCGCAAATCTCACATAAGCAGGTACCTTTGCCCACACCAAATCACCGTCGATCGAAGCCAAGCAACGATTTCCATTCTTGTAAAAATGAGTTCAAGCTAACGTGCAATGACCTAACTACAAAAGGTAAAATAGCAGGCCAAGTTGTTCAGTTACTTGTGGACACTGGAGCGTGCGTATCAGCCATAGACGAACAGCTAGTTACGAGGATTTATGGTCATTTCCCGCCTAATATGAGCAAGGGTTCCTTGTCGTCTGTCCAGACAGTCAGCGGAGAGAGAGTCTCAGTGTTAGGGAAGATTACGATACCTTTACAGCTACAAGGAAGAGAATATATCTGTGAGTTTCATATTATGCAGAACCTCGCCTACGATGCAATACTTGGTCGAGATTTCCTACAAAAGAACGGAGCCCTAATTGATCTAGTCGACAGTACTCTTTCCTTCAGAGGAACAGCATACGTTGGAGACCACGCCAGCACTAACCCCATGCCAGTGATGGGAACCTTCCTTTCCCAGCAGATGAAGTTCAAAGAAAAGAACGCCGTGGCCAGTCATGTTAATGTAGTGCCTTGTCCAGAGATGCTCGAGCCTAAATTTGTTCAACGAAGTGAAGCAAGGAAACTGATGCCTTGTCACCAGTCACTTATCCTTTTGATGCTTATTGTCCTATACCTACTCACAGCTTCATGCACGCCGCCCACAGAAAACAACGACAAGCCCATTATACAGAAACTACCAAAGTTCTTCGCCCAAGAAGCCCCGGATGATAGCCTGCAAGATGGACACCTAAGTTGCACCCAAGTTAGCCTTGCGAATCGCAAGCAGAAATCTGACAAGAGTGTAACCCACAGTGAAAGAATGAAAACACCGAGATTTAAAGCACAAAAATCAGCAGTATCACTCATAGAGACAGGTGATTTTCAGGAAACCATGAAGTCCATGTCTTCAAGCAAAGAGAGCAGTTTTAAGCTAGCACAGGAGATTCATATCCACCTGAATGTAATGAATCAAAAGAGCCAGTTCATCATTAATCAGGAATTCTAA

Transcript

evm.model.contig_23285.7

atgaagttctattcatgGGACAAGTTTTCCTTGCTCTCGGTAACAccaaTGAAGGCCATCGAAGTAGATCCCCGTGTACCAGGAATTCGTGACGAGATTCCGTTCCCGCAAgcaaagcagtgctctccagagctAGATTTCCCCAGTTGTCAGTTCAGTTCTCCGTTCAGCCAGAAATTACAGAGCTCGCAGGAAGAACCTATCGTCGCAGTAGAAACTTATCGTCACAGTTGTGGAAAAGAGTGGTGCTTCGTGGATCTTCCCAGGACGTTATCAAGGCCTCAGAGCAGATTCAAGAAGTCCGTGAAGAGAGTTTTTAAGAAGAAACTTTCGCCGTATAACTTACGAAGTAGAAAATCAGCCGTTCCCGTAGTTAAAGCCAGTACGCCTAAAGTAAATAGAGAAGTACAGGCTTCATTATCAGAGGAAGAGAATTGTACATTGTTGTGTGAATTACCATATTACCGAAGTTCCGTCCACGAGTCGACGCACGCATTAGTCTTAAACGAAGAAATCCAGCCAAGTAAATCCAGCCACGGCCCACGTTTGTCCACCGCATTTTCCAGTCCCAGTCAGGCCGATAGTACGAATAGGGAAGCCATAAATATCAGTATAGATCAGCGTCGAGAGCCGTCCATTGTTCACCCAAGTTCATCAAAACAATCCACTCCCTGTGGACCGCGTGAAGGAAGCGAAAGCAGTTCATTAGAAGACTTCACTCCGATTGACTCCAGGCACTTACAGAGTGGCCCTCAGATTGCATTAGAACTTGAAGAAATCAGCGAACCCGAACACGAAGAACCAGATCCAGAACAGAATTCAAGTTTCGCACACGACTCAAACCCGTTAATTAATTCACAGTTGATTTCTCATAATCAATTGAGAGAGCGAGATagcataaattataaaaaaccaaaacaaaagaaaacaaaaacacgcaGCGACTCTGTTTCTAGCGCCGACTCCAGATATACAGAATCGGACGGTGAGCGAGAAGATTTGGAGGATAGCGAAAACgaaggaaaaaggaaagaaaacgagAAGTTCCTCCGTGTAAACGAGAGAGATCAACCCGACCTAACAGTCCTCATGGAAGCTGAAGCACTTAGAGAATTACAGGAGCAAATGGCTTCTCTACATACCCAGTTAACGTTACAACACAAGGCCCAGCAGCAAACAGCCACTGCATTACAGCAAGCACCAATTCCAGAAACGGTCAGTACGCGAAGGCCTGCTCCTTTCCATGGTTATGACTCTGAAGACGTGAACCGATGGTTGgataaaatagaaaattatcTAACTCTTCGCCGTATCGACCTGACCAGTAGAACAGCGCAGGCGGAGCTGGTAATGAATCTTGCTGGACCCGCAGAAGATTTCTATTACTCCTTACCCCATGATCGGAAGACCACGTACGCTGAACTAAGAGATTCTTTGAGAGAGAGGTTCGCGAATGACAACCAAAGCTGGATAATTTGGCAGGCAGTCACCACTCGCCAACAAGGAGCAATAGAACCGTTGGATACTTATCTAACTGACTTAACGAACAAGTTTCGTCGATTGAATATCACTGACGCGGAAAAGATGCGTTATTTTGTCCAGGGATTACGGCCAGAAGTCAGAGAGACCGTGCTTTTAAGACAACCCAAGTCATTTCGTGAAGCCGAGGAGATAGCAAGATTGACGTGTGCAGTGAAAAACACCATGGGTTCTCCTGTAACTGGCATGACGCGACACCCAAGCCATCCGGCCACGGGAATAAGTGAAGCAAGCGCGACAAGCCGTGCGCTCCTAGCAAAAATAGAAGAGTTGAGCGAAAAACTACAACAGAAGAACGAGCCCGCTAAGGGGGAGCCTACGCCAACTGATGCCAAACTCTTAGCCAAGCTTGACGCATTGATTACAGGCCTCCCGGCTAACCCAGGTACGCAGCAAACGTCACCATTACAGGCAAAATTGAATGAGCTCGTACAGAAAACGCCATCCAGGGGTGAGAATACGGCGAATCTGGCGGCCTATGCAGAACCAAACAGGAGAGAAACGCCGGATTTCATGCGTGAAATTCGACGAATGGAAGATAAATTAGAAGAACTTTCTCGCCAAGTGGATGCTCGGATTAAGGGGCTAGCTCGACGAAATTCGCCAAATCAGGTTGAACAGCCGAGGCAGCGAACACGAGAAGGTCAGTCCATTTGTTATACTTGTGGAAGAGTTGGCCATATTCAGCAGAACTGTAATCAGAGATCTTCGCGAGAAGCCAGTTATTATGACCGATTCCAGTCGAACCAGCCGCGACGCCAGACGAATGAAAATTATCCTCCTCGCGCAGGTTATAGTCAAACACAGCGACGAAACGAATTGCCCTCTTTTAATCCAAGGAACCCTCGTATGGCTGTGCTCGATGAAGAGTATGCTGATGGTTTTGTCGCTCCTCTAGGACAAAATACAGATAGCCAAACAATTCCAGAAGAAAGTGGCCCGTTTCCAAGAATAAACTGGAGCGATGTTGGCTCGCAAATTGGCAAGGAACTAACGCGGCAGTTAACAACTACAACTCACTTGGTTCCAGAAGTAGTCCAACAAAATCCAGTAAAGAAAAATCAGTCGCCAACTGTGGTTATTGAAATCCCAAAACAAAGTGACCAGCAAACAATGAAGCAAAATAAAGCAGCTTGTGAAGTAATAACCGCTGCCCGTTCCGAGCGCGAGTTACCTGGAAACCTGGAAACTAAGCCCAGACCGGAAACACGTCAGCAGCTGGTCACCAGTCCACTGGATCTAAGCCAACTCAGTGAAACCCAGGTGAATGACCAACCACAAAGTCAGGAAAAACACCACCTCTCAGAAACTGTCCCATTTCCTAACGCTGTACGCCGTACTAAAAGCAGCATTACGGCAGATACAGATGTAATTGTTGATTTGTGCACAGAAGGAACCATCGAAAGGACCTCGGATCCAGATCTCTCGCAGCCAACACTTAGTCCTTCCGCCGGAAGCGAATCCACGGCAGTCAACAAAGACAGCTCGCCTAATTGTATGCCAGATCATACCCAGGCCACAGGTGAAACTCCACCGTTAGTTGCTGAACAATGTAATATTGCCAATAATCAAGCCAAGCCACGTGACTTGACAGTCACCGCCCAGCTGAATGGCCAGGATATTAAGTTACTCGTAGACATGGGAGCAGGCATGTCAGTAATTGATGAACAGTTTACACGAGACGTATATAAAGATGAACTACCCAAGTTACAGAGAAGCGCCCTGGTCAATGTCAAAACTGTCAGTGGTAAGGAACTGCCAGTGCTTGGAAAGATTCAAGTTACACTCGGAATAGCAGGGGGAAAATATCCCTGTGAGCTACAAGTTGTTAAGAACCTAACATACGAGGCTGTCGTAGGTCGAGATTTCTTGAGAGCTAATGGTGCAGTGATAAACTTTCGACAGGGAACTTTGCAATTTGACAACAGTCAGTCCAGAGGTGTTAATGCAGCCAGCATCGCTACGTTTTCACAGGCCAACAACAAACAGACACCGGAATTACTGGACGAAATTCGCCGTATGGAGAACGGTTTCACcgaaaaattagaaaatctgAACCAACGAGTAGATCGCCTGAACCGCCTTGCCCGACGTAACAGCACCGTGTGTTATAGATGCGGACGCACTGGTCATATACAATATAACTGTTACAATTATTACCAGCCAGAAAGCCCGAGCCATGCACATTACAATCAGGAAGAAAATCATTGTCTCGCAACTAATCCCTCAGCGCACTTGTCCGCAGCTGCTCAGTATGCCCAGAGAGGCCTAAATCGTCATATCAACAAAGCAAAGAGTTCAGGGACAGTTGAACAAACATGTCATCAGCCAATACGCACTCGCAATCCAACATTTGAAGGAGAAGAAAATTCGTCAGATGATGCGTTAGCCGCCCTACCAAACGAAGAGACGATAAACAGCCCAGAAAAAGCAGCAAGCACCACACAATCACAACAGGAAGTGAAGCCGACAAGAGGCAATGAGCGAAAACCGCAAATCTCACATAAGCAGGTACCTTTGCCCACACCAAATCACCGTCGATCGAAGCCAAGCAACGATTTCCATTCTTGTAAAAATGAGTTCAAGCTAACGTGCAATGACCTAACTACAAAAGGTAAAATAGCAGGCCAAGTTGTTCAGTTACTTGTGGACACTGGAGCGTGCGTATCAGCCATAGACGAACAGCTAGTTACGAGGATTTATGGTCATTTCCCGCCTAATATGAGCAAGGGTTCCTTGTCGTCTGTCCAGACAGTCAGCGGAGAGAGAGTCTCAGTGTTAGGGAAGATTACGATACCTTTACAGCTACAAGGAAGAGAATATATCTGTGAGTTTCATATTATGCAGAACCTCGCCTACGATGCAATACTTGGTCGAGATTTCCTACAAAAGAACGGAGCCCTAATTGATCTAGTCGACAGTACTCTTTCCTTCAGAGGAACAGCATACGTTGGAGACCACGCCAGCACTAACCCCATGCCAGTGATGGGAACCTTCCTTTCCCAGCAGATGAAGTTCAAAGAAAAGAACGCCGTGGCCAGTCATGTTAATGTAGTGCCTTGTCCAGAGATGCTCGAGCCTAAATTTGTTCAACGAAGTGAAGCAAGGAAACTGATGCCTTGTCACCAGTCACTTATCCTTTTGATGCTTATTGTCCTATACCTACTCACAGCTTCATGCACGCCGCCCACAGAAAACAACGACAAGCCCATTATACAGAAACTACCAAAGTTCTTCGCCCAAGAAGCCCCGGATGATAGCCTGCAAGATGGACACCTAAGTTGCACCCAAGTTAGCCTTGCGAATCGCAAGCAGAAATCTGACAAGAGTGTAACCCACagtgaaagaatgaaaacaccGAGATTTAAAGCACAAAAATCAGCAGTATCACTCATAGAGACAGGTGATTTTCAGGAAACCATGAAGTCCATGTCTTCAAGCAAAGAGAGCAGTTTTAAGCTAGCACAGGAGATTCATATCCACCTGAATGTAATGAATCAAAAGAGCCAGTTCATCATTAATCAGGAATTCTAA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000755 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF13975 all species →	gag-asp_proteas	gag-polyprotein putative aspartyl protease	Domain	Interproscan
PF19259 all species →	Ty3_capsid	Ty3 transposon capsid-like protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR045358 all species →	Domain	Ty3 transposon capsid-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12917 all species →	ASPARTYL PROTEASE DDI-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_23285.7.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.