Gene detail

Detailed information of evm.model.contig_24225.6 in Platygyra sinensis

Genomic Location: contig_24225:33904...45067
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_24225.6

ATGTCTGGCTTCAAGATTGGAATTGAGGACAAAGTTCTTTTCATGCAGTCAAATGGTGGACTTACACCTGTGTCAAAGTTTTCTGGATCCCATGCCATTCTTTCTGGCCCAGCAGGAGGAGTGGTTGGTTATGCCATGACAACGTACCATTCAGAGACGGAACAGCCTGTTATTGGATTTGACATGGGTGGAACTTCGACTGATGTGTCTCGCTTTGCTGGTCAGTATGAACAAGTCTTTGAGACAACAACAGCTGGAATCACTATACAAGCCCCTCAGTTAGACATCAACACCGTGGCAGCAGGCGGTGGATCACGGCTCTTTTTCAGGGCAGGACTGTTTGTTGTTGGACCTGAGTCAGCTGGTGCCCATCCAGGACCTGTGTGTTATCGAAAAGGAGGTCCCCTAGCCGTTACTGATGCAAACTTGGTTCTTGGACGCATACTTCCAGAATTCTTCCCCAAGATTTTTGGGCCAGGCGAGAATCTTCCACTGGACAAACAAGGAACGTTAGAGGCTTTTCAAAAACTCACAAAAGAGATCAATGAATGTTTGGCCACTCAAAGCAATGAAAACAGAAAAGATGCACTGACTGTTGAAGAAGTGGCCATGGGCTTTGTTACAGTTGCCAACGAGACCATGTGCCGACCCATTAGAGCTTTGACGCAGGCCAGAGGACACAACACTGCTCGACATGTTCTTGCATGTTTTGGTGGTGCAGGTGGTCAGCATGCATGTGCTATTGCTCAGTCACTAGGAATGTCAACTGTGTTCATACATCGCCATTCAGGAATCCTTTCTGCCTTTGGATTGGCCCTGGCAGATGTCGTGCATGAAGCTCAAGAGCCATGTTCCTGTGTTTATAGCAAAGATTCGTACCAGTACCTAGATGAAAGAATTGGTCTCCTTACTCAACAGTGCAAAACGGAGCTCAAAACTCAGGGCTTTGATGAAAGTCAAATATCTATAAAAGTATTCCTCCACATGAGATACGATGGAACTGACTGTGCTTTGATATGCAATGTATCTCCTTGCAAAACAGAGAAGGTGCGAGAGAGTACTTCGTTTGGTTACTTTGGAAAAGTGTTTACAGACAGGTACTTGCAAGAGTTTGGTTTCACAATACCCAACCGGGCCATTATGGTTGATGATATCCGAGTACAAGGATGTGGACATTCCAGAACATCAGTCATTCACAAAACAACTCATTCAAGTGCTCTACCTCCAATTAAAAAAATCACTAAGTGTTTCTTCGATGGTGGTTTTCTTGACACCAGAGTGTATTTGCTGAATGATCTAGCTGCAGGACACTCAATAGAGGGACCTACCATTATCATAGATCAAAACAGTACCATCCTCGTGGAACCACAATGTACAGCATATATTACTACATCTGGAGATATTAGGATCGAGATTGGAAAAAACAAAGAAAAAAAACAAGTTACCACAGAACTAGATGCCATACAACTTTCTATATTTTCTCATCGCTTCATGAGCATAACAGACCAAATGGGAAGAGTTCTTCAAAGGACATCAATCTCTACTAATATCAAGCAAAAAAGCACCACTTACATCATTTACACGACTTTACATACATTAACGGCAATAGGGAGCTCGGGCGACCTACAAACTACTTACAATACACTTATACACTACTTACAGAACAGTAGTTACGTTGCTTACGGAGAATCAACAGCAACTACTGAACAAAAAAATATAATAGCAGTATACAGCATTGATACAATAAAGAAAAGTGGCGTAATGATAGGAACAGAAAGGCTTGATTTCTCCTGTGCCATGTTTGGCCCTAGTGGTGGCCTTGTGGCTAATGGTCCCCATGTACCTATGCATCTTGGATCAATGCAAGAAACAGTGAAATATCAGATTGAAGAGCTAAGTGACAGTTTGAAAGAAGGTGATGTCCTACTAAGTAACCACCCAAGTGCTGGAGGGACACATCTTCCTGATCTGACAGTCATCACCCCAGTAAGTTTTGTAGATCCTTTTACCTAA

Transcript

evm.model.contig_24225.6

ATGTCTGGCTTCAAGATTGGAATTGagGACAAAGTTCTTTTCATGCAGTCAAATGGTGGACTTACACCTGTGTCAAAGTTTTCTGGATCCCATGCCATTCTTTCTGGCCCAGCAGGAGGAGTGGTTGGTTATGCCATGACAACGTACCATTCAGAGACGGAACAGCCTGTTATTGGATTTGACATGGGTGGAACTTCGACTGATGTGTCTCGCTTTGCTGGTCAGTATGAACAAGTCTTTGAGACAACAACAGCTGGAATCACTATACAAGCCCCTCAGTTAGACATCAACACCGTGGCAGCAGGCGGTGGATCACGGCTCTTTTTCAGGGCAGGACTGTTTGTTGTTGGACCTGAGTCAGCTGGTGCCCATCCAGGACCTGTGTGTTATCGAAAAGGAGGTCCCCTAGCCGTTACTGATGCAAACTTGGTTCTTGGACGCATACTTCCAGAATTCTTCCCCAAGATTTTTGGGCCAGGCGAGAATCTTCCACTGGACAAACAAGGAACGTTAGAGGCTTTTCAAAAACTCACAAAAGAGATCAATGAATGTTTGGCCACTCAAAGCAATGAAAACAGAAAAGATGCACTGACTGTTGAAGAAGTGGCCATGGGCTTTGTTACAGTTGCCAACGAGACCATGTGCCGACCCATTAGAGCTTTGACGCAGGCCAGAGGACACAACACTGCTCGACATGTTCTTGCATGTTTTGGTGGTGCAGGTGGTCAGCATGCATGTGCTATTGCTCAGTCACTAGGAATGTCAACTGTGTTCATACATCGCCATTCAGGAATCCTTTCTGCCTTTGGATTGGCCCTGGCAGATGTCGTGCATGAAGCTCAAGAGCCATGTTCCTGTGTTTATAGCAAAGATTCGTACCAGTACCTAGATGAAAGAATTGGTCTCCTTACTCAACAGTGCAAAACGGAGCTCAAAACTCAGGGCTTTGATGAAAGTCAAATATCTATAAAAGTATTCCTCCACATGAGATACGATGGAACTGACTGTGCTTTGATATGCAATGTATCTCCTTGCAAAACAGAGAAGGTGCGAGAGAGTACTTCGTTTGGTTACTTTGGAAAAGTGTTTACAGACAGGTACTTGCAAGAGTTTGGTTTCACAATACCCAACCGGGCCATTATGGTTGATGATATCCGAGTACAAGGATGTGGACATTCCAGAACATCAGTCATTCACAAAACAACTCATTCAAGTGCTCTACCTCCAATTAAAAAAATCACTAAGTGTTTCTTCGATGGTGGTTTTCTTGACACCAGAGTGTATTTGCTGAATGATCTAGCTGCAGGACACTCAATAGAGGGACCTACCATTATCATAGATCAAAACAGTACCATCCTCGTGGAACCACAATGTACAGCATATATTACTACATCTGGAGATATTAGGATCGAGAttggaaaaaacaaagaaaaaaaacaagttacCACAGAACTAGATGCCATACAACTTTCTATATTTTCTCATCGCTTCATGAGCATAACAGACCAAATGGGAAGAGTTCTTCAAAGGACATCAATCTCTACTAATATCAAGcaaaaaaGCACCACTTACATCATTTACACGACTTTACATACATTAACGGCAATAGGGAGCTCGGGCGACCTacaaactacttacaatacacttATACACTACTTACAGAACAGTAGTTACGTTGCTTACGGAGAATCAACAGCAACtactgaacaaaaaaatataatagcAGTATACAGCATTgatacaataaagaaaagtgGCGTAATGATAGGAACAGAAAGGCTTGATTTCTCCTGTGCCATGTTTGGCCCTAGTGGTGGCCTTGTGGCTAATGGTCCCCATGTACCTATGCATCTTGGATCAATGCAAGAAACAGTGAAATATCAGATTGAAGAGCTAAGTGACAGTTTGAAAGAAGGTGATGTCCTACTAAGTAACCACCCAAGTGCTGGAGGGACACATCTTCCTGATCTGACAGTCATCACCCCAGTAAGTTTTGTAGATCCTTTTACCTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02538 all species →	Hydantoinase_B	Hydantoinase B/oxoprolinase	Family	Interproscan
PF01968 all species →	Hydantoinase_A	Hydantoinase/oxoprolinase	Family	Interproscan
PF19278 all species →	Hydant_A_C	Hydantoinase/oxoprolinase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045079 all species →	Family	Oxoprolinase family	Interproscan
IPR003692 all species →	Domain	Hydantoinase B/oxoprolinase	Interproscan
IPR002821 all species →	Domain	Hydantoinase A/oxoprolinase	Interproscan
IPR049517 all species →	Domain	Acetophenone carboxylase-like, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11365 all species →	5-OXOPROLINASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006749 all species →	Biological Process	glutathione metabolic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0017168 all species →	Molecular Function	5-oxoprolinase (ATP-hydrolyzing) activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_24225.6.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.