Gene detail

Detailed information of evm.model.contig_24293.2 in Platygyra sinensis

Genomic Location: contig_24293:6183...10630
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03660 all species →	PHF5	PHF5-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005345 all species →	Family	PHF5-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13120 all species →	PHD FINGER-LIKE DOMAIN-CONTAINING PROTEIN 5A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005686 all species →	Cellular Component	U2 snRNP	Interproscan
GO:0005689 all species →	Cellular Component	U12-type spliceosomal complex	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12834	PHF5A; PHD finger-like domain-containing protein 5A	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.