Gene detail

Detailed information of evm.model.contig_24609.2 in Platygyra sinensis

Genomic Location: contig_24609:9130...10161
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00808 all species →	CBFD_NFYB_HMF	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan
IPR051377 all species →	Family	DNA Polymerase Epsilon Subunit	Interproscan
IPR003958 all species →	Domain	Transcription factor CBF/NF-Y/archaeal histone domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46172 all species →	DNA POLYMERASE EPSILON SUBUNIT 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan
GO:0006272 all species →	Biological Process	leading strand elongation	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0008622 all species →	Cellular Component	epsilon DNA polymerase complex	Interproscan
GO:0008623 all species →	Cellular Component	CHRAC	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0031507 all species →	Biological Process	heterochromatin formation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02326	POLE3; DNA polymerase epsilon subunit 3	EC:2.7.7.7	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.