Gene detail

Detailed information of evm.model.contig_25529.4 in Platygyra sinensis

Genomic Location: contig_25529:10175...24199
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16491 all species →	Peptidase_M48_N	CAAX prenyl protease N-terminal, five membrane helices	Domain	Interproscan
PF01435 all species →	Peptidase_M48	Peptidase family M48	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027057 all species →	Family	CAAX prenyl protease 1	Interproscan
IPR032456 all species →	Domain	CAAX prenyl protease 1, N-terminal	Interproscan
IPR001915 all species →	Domain	Peptidase M48	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10120 all species →	CAAX PRENYL PROTEASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0071586 all species →	Biological Process	CAAX-box protein processing	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06013	STE24; STE24 endopeptidase	EC:3.4.24.84	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.