Gene detail

Detailed information of evm.model.contig_27116.3 in Platygyra sinensis

Genomic Location: contig_27116:7143...20425
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_27116.3

ATGTGTGGCTTCATAGCTCAGTTGGTAGAGTATCGCACTGGTATCGCGGAGGTCACAGATGCTGATGCTGAGAAACCTCAAACTAAGAAAAGGAAGACAGAGGATTCTGGATCAGCAAAGAGCACTCAAAATGGAAAGAAGCGTAAGAGAGAGGATGAAAATGAGGCAGAAGAAAATGTCTTGGATGATGAACAGACTGTAAAGAAGTCAAATGCAGCATCAGAGAAAGACTCTTTTTCTGGGGACACAAATGTAAATGCTGATGAAAATAAAGACGATGAACAGTCAAAGGCCGAGGCAGTTGCAAAGCATTTTGGTCTCAACAATGTTGAAGTGAATCTTTCAGAAGAGAATGAACAAGGAATGACCTATTTGAAGTTCAACAAACTGATACGACCCCTGATTGTTGAAGCCAACCCTGGAACAGCGCATACCAAGGTCAACTCACTTCTTGGAGCAATTTGGAGTGACTACAAGAGGAAAAAAGGCAAAGACACTAGCTCTTCAAATACACCAAGTCCTAAAGCACCCAGTAAAGCTAAGAAGCAGAAAAACACGTCCAAATCTACCAAAGCAGCCAAACAACCTAAGGAGATCATGGAGTTATCAGATGGAGATGACTCTGAGCCTGTATCTGGTCCTGAATTGGAGGATGATGATGAAGTCGTCAGTGAAAGGAATAGTACTTCAAAACAAAGAACCAAGATTAAAATGCTTTTTAAACCAAAATCAAAGGGATCTAAAGGAGACAGAAAGGCAAAAATCCAAGATGATGATAGTGACCGAGGAAGTGAGGCCAGCTCAGGTAGCAGATCAAAAAGGAGTAATGGCAGAGCAAGTGGTAAAGCTAAGGCTAACAAGAAAAAGACTGATGACACAGTTGATGAGGACAGTGATACAAGCCAGGCTAGTGGAAAAACCATCAAGAAAAAGGCTAGAAGCACTCTGAAAATGAAAAAGGAAAAGGTTATTATCAGCAAAAAGAAGAAAGAAAGGAAGAAAAGTACTGGAAATGATGAAGATAACGTAATGAGCGTGGATGAACATCAGGATTACTGCGAGGAATGCGAAGAGGGTGGAGACCTGTTACTCTGTGATACCTGCACTCTGTCATTTCATTTGAGGTGTCTTGATCCTCCACTTGATGAGCCACCACAAGGGCGTTGGAGTTGTCCTGTCTGTGAAGATGAAATGACAAGCGATTCTAGTGAAGATATGCATAGTGATTATTGCCGAGTGTGTAAAGATGGCGGACAATTACTTTGCTGTGACAGCTGTCCATCAGCTTATCACTTGCACTGTTTGATTCCACCCATGAAAAAAATACCTGGTGGAGACTGGAGGTGTCCAAGGTGCAAGAGTGAACCATTAAAAGGCAAAGTTGAGAGAATTCTCCACTGGCGTTATGTTAACCTTCCAGTTGAAGGTACTGTGCTTGATGCAGATGGGAATGAAGAGCTGACTGAACCTGAGACCTATGAAACAAGGGAATTCTTTGTCAAATGGGTGGATATGTCTTACTGGAATTGTTCATGGATCACTGAACTTCAGTTGGAGATTTACCACCCCAGCATGTATCGAGCATACTTCCGTAAGAACGACATGGAAGAACCCCCTCCAGTCGACGATGGTGATGAAGACAAGGAGACTCCAGCACATGTTATACAAAACAGTAAGGCAGAGGATGAGAGTAACCTAGAGGCAAGATTTTACAGATATGGAGTGCGACCAGAGTGGCTACAGATTCACCGCATCTTGAGACATAGGGTTACAAAGCAATCCAAAGAAATGTACTATATCAAATGGCGAGATGTTCCATATAACCTGAGTACATGGGAAAACACAGAAGATCCTGTAAACTCCCAAATCAGTGATTTCAAGGACCACATAGCAAAATACAAAGAACACAGAGATGCTTATGAGAAGAAAAACAGTACCAGCAAGAAAAAGCCCCACAAACAAAAGAAAGTCAAGAAAGCAGCGCCAATTGGCAATGTAACCTTTTTAATCAGAAATTTTGGCATCATTTCAAAACGAATTGAAGTAGCAGAGCATTAA

Transcript

evm.model.contig_27116.3

atgtgtggcttcatagctcagttggtagagtatcgcactggtatcgcggaggtcacagATGCTGATGCTGAGAAACCTCAAACTAAGAAAAGGAAGACAGAGGATTCTGGATCAGCAAAGAGCACTCAAAAtggaaagaagcgtaagagagAGGATGAAAATGAGGCAGAAGAAAATGTCTTGGATGATGAACAGACTgtaaagaagtcaaatgcagcATCAGAGAAAGACTCTTTTTCTGGGGACACAAATGTAAATGCTGATGAAAATAAAGACGATGAACAGTCAAAGGCCGAGGCAGTTGCAAAGCATTTTGGTCTCAACAATGTTGAAGTGAATCTTTCAGAAGAGAATGAACAAGGAATGACCTATTTGAAGTTCAACAAACTGATACGACCCCTGATTGTTGAAGCCAACCCTGGAACAGCGCATACCAAGGTCAACTCACTTCTTGGAGCAATTTGGAGTGACTACAAGAGGAAAAAAGGCAAAGACACTAGCTCTTCAAATACACCAAGTCCTAAAGCACCCAGTAAAGCTAAGAAGCAGAAAAACACGTCCAAATCTACCAAAGCAGCCAAACAACCTAAGGAGATCATGGAGTTATCAGATGGAGATGACTCTGAGCCTGTATCTGGTCCTGAATTGGAGGATGATGATGAAGTCGTCAGTGAAAGGAATAGTACTTCAAAACAAAGAACCAAGATTAAAATGCTTTTTAAACCAAAATCAAAGGGATCTAAAGGAGACAGAAAGGCAAAAATCCAAGATGATGATAGTGACCGAGGAAGTGAGGCCAGCTCAGGTAGCAGATCAAAAAGGAGTAATGGCAGAGCAAGTGGTAAAGCTAAGGCTAACAAGAAAAAGACTGATGACACAGTTGATGAGGACAGTGATACAAGCCAGGCTAGTGGAAAAACCATCAAGAAAAAGGCTAGAAGCACTCTGAAAATGAAAAAGGAAAAGGTTATTATCagcaaaaagaagaaagaaaggaagaaaagtACTGGAAATGATGAAGATAACGTAATGAGCGTGGATGAACATCAGGATTACTGCGAGGAATGCGAAGAGGGTGGAGACCTGTTACTCTGTGATACCTGCACTCTGTCATTTCATTTGAGGTGTCTTGATCCTCCACTTGATGAGCCACCACAAGGGCGTTGGAGTTGTCCTGTCTGTGAAGATGAAATGACAAGCGATTCTAGTGAAGATATGCATAGTGATTATTGCCGAGTGTGTAAAGATGGCGGACAATTACTTTGCTGTGACAGCTGTCCATCAGCTTATCACTTGCACTGTTTGATTCCACCCATGAAAAAAATACCTGGTGGAGACTGGAGGTGTCCAAGGTGCAAGAGTGAACCATTAAAAGGCaaagttgagagaattctccACTGGCGTTATGTTAACCTTCCAGTTGAAGGTACTGTGCTTGATGCAGATGGGAATGAAGAGCTGACTGAACCTGAGaccTATGAAACAAGGGAATTCTTTGTCAAATGGGTGGATATGTCTTACTGGAATTGTTCATGGATCACTGAACTTCAGTTGGAGATTTACCACCCCAGCATGTATCGAGCATACTTCCGTAAGAACGACATGGAAGAACCCCCTCCAGTCGACGATGGTGATGAAGACAAGGAGACTCCAGCACATGTTATACAAAACAGTAAGGCAGAGGATGAGAGTAACCTAGAGGCAAGATTTTACAGATATGGAGTGCGACCAGAGTGGCTACAGATTCACCGCATCTTGAGACATAGGGTTACAAAGCAATCCAAAGAAATGTACTATATCAAATGGCGAGATGTTCCATATAACCTGAGTACATGGGAAAACACAGAAGATCCTGTAAACTCCCAAATCAGTGATTTCAAGGACCACATAgcaaaatacaaagaacacaGAGATGCttatgagaagaaaaacagtACCAGCAAGAAAAAGCcccacaaacaaaagaaagtcaAGAAAGCAGCGCCAATTGGCAATGTAACCTTTTTAATCAGAAATTTTGGCATCATTTCAAAACGAATTGAAGTAGCAGAGCATTAA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08073 all species →	CHDNT	CHDNT (NUC034) domain	Domain	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan
PF00385 all species →	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR012958 all species →	Domain	CHD, N-terminal	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR000953 all species →	Domain	Chromo/chromo shadow domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR023780 all species →	Domain	Chromo domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24102 all species →	PHD FINGER PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.contig_27116.3. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_27116.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.