Gene detail

Detailed information of evm.model.contig_27574.1 in Platygyra sinensis

Genomic Location: contig_27574:155...12549
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_27574.1

ATGGAGTTATGCATTGTGTTGGCATGTGGATCCAAAAGTGGCAAACGTAAAGGTCTTGGATTCTTTCAGAAACCCAAAATCATCACTAACCAAGGCGAAGAGTACGAGGAACTGAGTAGAAAGCGTGGGGAAAGATCTGAGAACCGAGTTGAAAGGAGACAGAAGGCCGCCATTGAACAACGAGAGCAGGAAGCTACAAAGAAGAGAAAACTTCTAGAACAAAGTGGTGGTCGCATCTGTGATTTAGACTTTGAATCTGGGGCTAGTACATCAGAAATTACAGAGGAACAGCTAACTGATGGAATGGATACTTTTGCGATTGGCAGGGAGCGAAGCGCAAAACTAAAGAGTTCGCACATTCCTCCACACAAACAGTGGCACCAACTGAAGGGATTCAAACTGAAGAGTTTTAGTATTTATTTGAAAGACCTTGTGGCTATAAGGCACCTGGAAGAGATTTCTTCGATACTGACGACAAAGTATATAGATGAACTGAGCAATCAGTTAAAGAAAGAATTTCCTCTAGCCTCCCCTACTGAAAAGGATGATGGCATTAACAAGGATAATGTGGTACACATCTATTACAAGGGTGAACATAGAGAGCTAATTGAACTTGCTCCACTCTGTGTAACATACTTTCTTGTGTTTCTATACTTGGCATTTTCTGTTGGTAAGATAGAGATGGTTAAGAGCAAGTGGGGATTGGCATTTAGTGCTGTCATCTCAGTAATCGCATCTCTGGTCATGGCTGCAGGATTATGTTCATTCCTTGGTCTTGTTACCACTCTAGACAGCAGTGAAATATTTCCTTATCTCGTTATTGTGGTCGGTGTTGAAAACATTCTTGTGATAACAAAGTCAGTGGTGTCAACACCAGTGGATCTCGAGGTCAAGATAAGAGTTGCACAAGGATTAAGCAAGGAAGGATGGTATATCATGAAATATCTGTGTACAGAAGTGGCTGTTTTATTATGTGGCTACATCACCTTTGTACCAGCTATACAGGAGTTTTGTTTTTTTGCCATGGTTTGCCTGCTCTCAGACTTCTTTCTTCAGATGGTACTGTTTGTCACAGTTCTCTCTATTGACATAAGGAGGATGGAGCTTTCAGATCTTCAAAGGCAGCCAATTCAGGTCAGAGAAAGAAGTCAATCAGATAATTCACAGAAAGGAACTTCACCAACATCAGCTCAAAGGCCTCCATCACCAGTGTCCAGTCCCCCTCATTCCCCTCAACCAGTACGGTTCTTTGGCTTGCTGCCTCCTCTGCCACCATTTAAACTGAATTCTCAGAGTACTCCCCCACGGGAGTGCCCAGTTCTCCCCAAGAAGCTCCCCAAAAGGCTTAATTTTGCTTACTTTTGGGCAAGAACAAGGATAGTACAAAAAGTTCTCATGGTATGTGTCTTTATTTATTTTATCTACATCTTGAGCTACCCACGCTCAGAATCTCCGGACACACTCCCTGGTCAGCAGAACTCGGACAAAATAGCGGAAAATGAAAACAGTTCAAAGTTTGAAGACAGTGAAATCAGATTTACCCAGGGAGTAGAGGAAAGTATCAATCAGTCAAGATGGACAAGTGCGAGAAAATCTGCGAGAAGGATGGGAAAAGAGTTTCCAATCAAACCTCCTTCTGCTGAGTTGTGGAAAGGTCTTTATCAACGACACTGGCCCCAGCTGTTAAATTACTACAATATCAGCCTTCTCGGCAGGTACGTAACAGTTCTACCGCCTGTTCATCTGGGCATCAACATCGATACAGACATTTTCGTTACGGATGCGCCTCAAGATGGCGGCGACCAACTGTTGGCAAGTAACCAGGAGTTCCCTTCAGTAGAGGGGACGGTTAAAATTGATCATCCTCTGGGGAATGGACAGGAGACGGCTTCGGGCCGAGATCCCGAGTATTATCACAACGCCTTGTCCTGTGTGGTACTTGGTGTAGTCGTCATGATTATTCTCTTCTTTGTCTGTAAATTTCTGAATGATCTTCAAGTGAATCCCAGGTCAGGACGCGGAAGGAAGGGAAACGGGCATCGATGCGATACACTGGTAGAGAGCGTTCCCATCAGCCTAAGAGGGCACACTCAGGTTGGTATGACTTGTGTTTTTGATGGCTTGTTTCCTGCAATACAACTCCCTGTTCATTCAGACGTGCCGCTTAAGCGAAAGACAAAGCAGAGGAAGCTGAAACACAGGCGCAGTGTGGGTGCGGACAGCGGCTACACAACTCAGAGGTTCTTAGAAAACCTTCCTAGCACTATTGCGCAAGTCATCCCTGGACACGTGTCAGCCTCGGAATATACGCCTTCTCAGCTGTGCAGCACAGATGAGAACGGCACAGAAGTGAACGATGAAATACTGCTCTCACCAAAATCTGAATCAAACGCTGCGGAAATCGGTGTTGTGAATAACAGCTGTTCACTTGATGAGTCATTCATGTCTGGCGGGAGTCCAAAGTCCACAGGTTACGACTTCAGTAAGTACACCAATGGCATGGACATACCCACATGGTCTCCCAGGGTGAGTTCTAGAGGCTCTTTTACCAGCTCGTGGTCAAGCACTGATGAAGAAGACGCAGGATGGCTGTCGGGCTCAGAGGAGTCATGTGATGAACAGGCGTACGCCCAGACTGACAGTTTCCATAGCAACCGAGCTACTAAAGCCTCGGTGTGGTGTGTTGATTGTAAGGGTGATTTATTGGTGACTGGCTGTAGTGACGGTGCTATCGAGATTTGGAGTGTGTCGTCTGGTGCCCAAGTCTACGTGTCACGTGATGGCAACATTGGCGTGACGAAACTTAGCTTTTTACTGGGGAGGTAA

Transcript

evm.model.contig_27574.1

ATGGAGTTATGCATTGTGTTGGCATGTGGATCCAAAAGTGGCAAACGTAAAGGTCTTGGATTCTTTCAGAAACCCAAAATCATCACTAACCAAGGCGAAGAGTACGAGGAACTGAGTAGAAAGCGTGGGGAAAGATCTGAGAACCGAGTTGAAAGGAGACAGAAGGCCGCCATTGAACAACGAGAGCAGGAAGCTACAAAGAAGAGAAAACTTCTAGAACAAAGTGGTGGTCGCATCTGTGATTTAGACTTTGAATCTGGGGCTAGTACATCAGAAATTACAGAGGAACAGCTAACTGATGGAATGGATACTTTTGCGATTGGCAGGGAGCGAAGCGCAAAACTAAAGAGTTCGCACATTCCTCCACACAAACAGTGGCACCAACTGAAGGGATTCAAACTGAAGagttttagtatttatttgaaagaccttgtgGCTATAAGGCACCTGGAAGAGATTTCTTCGATACTGACGACAAAGTATATAGATGAACTGAGCAATCAGTTAAAGAAAGAATTTCCTCTAGCCTCCCCTACTGAAAAGGATGATGGCATTAACAAGGATAATGTGGTACACATCTATTACAAGGGTGAACATAGAGAGCTAATTGAACTTGCTCCACTCTGTGTAACATACTTTCTTGTGTTTCTATACTTGGCATTTTCTGTTGGTAAGATAGAGATGGTTAAGAGCAAGTGGGGATTGGCATTTAGTGCTGTCATCTCAGTAATCGCATCTCTGGTCATGGCTGCAGGATTATGTTCATTCCTTGGTCTTGTTACCACTCTAGACAGCAGTGAAATATTTCCTTATCTCGTTATTGTGGTCGgtgttgaaaacattcttgtgaTAACAAAGTCAGTGGTGTCAACACCAGTGGATCTCGAGGTCAAGATAAGAGTTGCACAAGGATTAAGCAAGGAAGGATGGTATATCATGAAATATCTGTGTACAGAAGTGGCTGTTTTATTATGTGGCTACATCACCTTTGTACCAGCTATACAGgagttttgtttttttgccatGGTTTGCCTGCTCTCAGACTTCTTTCTTCAGATGGTACTGTTTGTCACAGTTCTCTCTATTGACATAAGGAGGATGGAGCTTTCAGATCTTCAAAGGCAGCCAATTCAGGTCAGAGAAAGAAGTCAATCAGATAATTCACAGAAAGGAACTTCACCAACATCAGCTCAAAGGCCTCCATCACCAGTGTCCAGTCCCCCTCATTCCCCTCAACCAGTACGGTTCTTTGGCTTGCTGCCTCCTCTGCCACCATTTAAACTGAATTCTCAGAGTACTCCCCCACGGGAGTGCCCAGTTCTCCCCAAGAAGCTCCCCAAAAGGCTTAATTTTGCTTACTTTTGGGCAAGAACAAGGATAGTACAAAAAGTTCTCATGGTATgtgtctttatttattttatctacATCTTGAGCTACCCACGCTCAGAATCTCCGGACACACTCCCTGGTCAGCAGAACTCGGACAAAATAGCGGAAAATGAAAACAGTTCAAAGTTTGAAGACAGTGAAATCAGATTTACCCAGGGAGTAGAGGAAAGTATCAATCAGTCAAGATGGACAAGTGCGAGAAAATCTGCGAGAAGGATGGGAAAAGAGTTTCCAATCAAACCTCCTTCTGCTGAGTTGTGGAAAGGTCTTTATCAACGACACTGGCCCCAGCTGTTAAATTACTACAATATCAGCCTTCTCGGCAGGTACGTAACAGTTCTACCGCCTGTTCATCTGGGCATCAACATCGATACAGACATTTTCGTTACGGATGCGCCTCAAGATGGCGGCGACCAACTGTTGGCAAGTAACCAGGAGTTCCCTTCAGTAGAGGGGACGGTTAAAATTGATCATCCTCTGGGGAATGGACAGGAGACGGCTTCGGGCCGAGATCCCGAGTATTATCACAACGCCTTGTCCTGTGTGGTACTTGGTGTAGTCGTCATGATTATTCTCTTctttgtctgtaaatttctgaATGATCTTCAAGTGAATCCCAGGTCAGGACGCGGAAGGAAGGGAAACGGGCATCGATGCGATACACTGGTAGAGAGCGTTCCCATCAGCCTAAGAGGGCACACTCAGGTTGGTATGACTTGTGTTTTTGATGGCTTGTTTCCTGCAATACAACTCCCTGTTCATTCAGACGTGCCGCTTAAGCGAAAGACAAAGCAGAGGAAGCTGAAACACAGGCGCAGTGTGGGTGCGGACAGCGGCTACACAACTCAGAGGTTCTTAGAAAACCTTCCTAGCACTATTGCGCAAGTCATCCCTGGACACGTGTCAGCCTCGGAATATACGCCTTCTCAGCTGTGCAGCACAGATGAGAACGGCACAGAAGTGAACGATGAAATACTGCTCTCACCAAAATCTGAATCAAACGCTGCGGAAATCGGTGTTGTGAATAACAGCTGTTCACTTGATGAGTCATTCATGTCTGGCGGGAGTCCAAAGTCCACAGGTTACGACTTCAGTAAGTACACCAATGGCATGGACATACCCACATGGTCTCCCAGGGTGAGTTCTAGAGGCTCTTTTACCAGCTCGTGGTCAAGCACTGATGAAGAAGACGCAGGATGGCTGTCGGGCTCAGAGGAGTCATGTGATGAACAGGCGTACGCCCAGACTgacagtttccatagcaaccgaGCTACTAAAGCCTCGGTGTGGTGTGTTGATTGTAAGGGTGATTTATTGGTGACTGGCTGTAGTGACGGTGCTATCGAGATTTGGAGTGTGTCGTCTGGTGCCCAAGTCTACGTGTCACGTGATGGCAACATTGGCGTGACGAAACTTAGCTTTTTACTGGGGAGGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12349 all species →	Sterol-sensing	Sterol-sensing domain of SREBP cleavage-activation	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000731 all species →	Domain	Sterol-sensing domain	Interproscan
IPR030225 all species →	Family	Sterol regulatory element-binding protein cleavage-activating protein	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46378 all species →	STEROL REGULATORY ELEMENT-BINDING PROTEIN CLEAVAGE-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0032933 all species →	Biological Process	SREBP signaling pathway	Interproscan
GO:0032934 all species →	Molecular Function	sterol binding	Interproscan
GO:0032936 all species →	Cellular Component	SREBP-SCAP complex	Interproscan
GO:0045540 all species →	Biological Process	regulation of cholesterol biosynthetic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_27574.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.