Gene detail

Detailed information of evm.model.contig_27772.5 in Platygyra sinensis

Genomic Location: contig_27772:24844...29275
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006944 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04697 all species →	Pinin_SDK_N	pinin/SDK conserved region	Family	Interproscan
PF04696 all species →	Pinin_SDK_memA	pinin/SDK/memA/ protein conserved region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039853 all species →	Family	Pinin	Interproscan
IPR006787 all species →	Domain	Pinin/SDK	Interproscan
IPR006786 all species →	Domain	Pinin/SDK/MemA protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12707 all species →	PINN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13114	PNN; pinin	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.