Gene detail

Detailed information of evm.model.contig_28461.1 in Platygyra sinensis

Genomic Location: contig_28461:3814...10130
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17226 all species →	MTA_R1	MTA R1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035170 all species →	Domain	Metastasis-associated protein MTA1, R1 domain	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR040138 all species →	Family	Mesoderm induction early response protein/metastasis-associated protein	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR000679 all species →	Domain	Zinc finger, GATA-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10865 all species →	METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0016575 all species →	Biological Process	obsolete histone deacetylation	Interproscan
GO:0016581 all species →	Cellular Component	NuRD complex	Interproscan
GO:0042826 all species →	Molecular Function	histone deacetylase binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_28461.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.