Gene detail

Detailed information of evm.model.contig_28552.2 in Platygyra sinensis

Genomic Location: contig_28552:13415...20076
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_28552.2

ATGATGATGTTATGTAAACCTACTGCCTTCCTAGCAGTAGAGATTTTCTGTGATGATTTCCAGTGGACAGAGCACGGATATCAAAGCTCTGTTATAAAGGTCAGTGGTCATGTTGGTTATATGGATTTTGCATTTTCAGACCTGAAATTCCCAAAGATGAAGTTTAAGGGAGTCAAGCAATCTTCAGTGATAAGAACAAAGACAAAGGAGGTCCCAGAAGATTCTGCTGATTTAAGCATTGGTGGTATGAAATTCCCATACCCTTACAGTGACCAACCAACAGTACAAAAAGAAGAGAAGAAAACAACAGTCAGCAAAGAAGAGAAACAGAAAAAGAAGACAAGTGTTCCCAGTGTACCAGAGTATAGAATAGTACATCGTGGACACATTGACCTTCAGAACTTTACACATGCAAGAGATTCTAATCAAAGCACAAGACCCAAAGAACTGCTTGTATATATTGATTTGCCGCTGTTGGAATCTGCTGCTCCTGTGGAGTTAGATATTCTTGAGAAGAAGCTCAAGTTGGCCTGCAAGGATCCTCCTTACAATCTAGAAATATCCTTGTTACTTTATTGTATTTTTAAATGTGGTGTTGACGAAGAAAATGGCTCCGCTAAGTTTGACAAAAGCAAAAGGCAACTAACTGTTACATTGCCCGTGTTACCAGCTCTACTGATTGCACAATTGGGTGAAGGAGAAGGAGATGGTACAGAAGAACAGGTTGAAGTTTTACAAAGCACAAATGATGAATTGCTGAATTCAATTCCGTCAAGCGCAGAAGAATTTATTGATAATACTGTGTCACGTGATGAAATGAAGCCAGGTGAAGGTGATTCTACTAAGGATAATTCAGAGGACAACACTAGTGCTGCTTGGTGGAACGAGAAATTACAACGTAATGCAGAGAATGAATTACTTCAGAGTCCCGAGGATGAAGATAGCACAGACATCCGATTCAACCTGCCAAGCTCATCAGATTCAGATTTGTCATCGCCATGTTTCTTTACGTGTCCACCTTACAACTACAACCAGGATGATGACGTCATCACATTCATCATTGACGTGGCAGATGTCGCCCTTGACACAGTCTCTCTCGGTTTCAAGAAAAATAAGGCATACATTAGCTTCCCACACGGTACGCCCCGCCCTGGGGAACTGCCTCCCCCGGATTACGCCCTCTATCTACAGTTCCCGGATGATCATAACCTGGACGCAAATCTCTGTAATATTGACGTCAGCAAGGAGAATCTAGTTCTGAGTCTTCACAAAGAGGGATCCTGCAAAGGAATGTGGGACAGTTTCGAGGCAGGTTCAGGAGAAGATAATTTGGAGACAAAGTTCTTAATAACGGAGAATACGGTGGATATGATGATGAAAGAAATTGCCGCGCAGGATCCGTGGTCCACTGTCGCTACTGATCGGGAAACAAACGTGAAGGTTTCATCTCTGACTGATGACTGCCTTAGTCTTGAGATACAAACCAATCCAGGACACTCCGCACATGAACTGTTGGGATCTCAGTGGAATTCAACAGAAGAGCAGTCAGACAAAACTGAGCACATGGGGGAAAGCATTAGTTCATGCGAGAAAGTGAACGTGGCTGACTTAGCAGAAGAACTTCACAGAACTAAACTAGATGGAAATGATTTTTGTGACAATGAGTGCGAGAATGCGGAGCGTACAGATGTGAAAAGCATAGCGGAATCTGTGAATTCCGATCCAGCGATGAGCGATAGTGAAGCAGCCTGTGCGGAAATGGGAGACAGTTTCGTGCCAGTCGATGTGATAAGTAACGCAGTGAGGAGTCGGCGGTCTATTCTGCGGAGGACTTCCAGCACTTCCACGGATGATTCCATAGGAGACGAGAATGAATTTAACGGGGTACCGGATTCCCCGAGTAAGAAAAATGTACGATTTAACCTCAACCCAAACGTTCGTGTTTTTAGCAACAAAAAGGATAAAAAGAAAAGGAAATTAGAGGCAAAGCTTAAGGCTGAAGCGCAAAAACATTCATTAGAAAGCGAAGGAAGTGGATCTGAACAGAGCAACGGGATGTCGCCCGTTGATAACGGGACGGGATGGGATGGGTTTGATGATCAATCCCTCGGGAAGGGAACTAACGGGATAACTTCTCTTAAAACTCCAGATAATGAAGAGGTTGTCAAGGTAAACGAAAAAGGAGTTGAAATTAGTGATGATCAAACCAAAGGCGATGGTTTTGGCAAACCTTCAAGTTCTTTGTTAAGTGGTTGTGACTCTTTTGGGATGACTAATAATTTAATATTTGAATTAGATGACTGA

Transcript

evm.model.contig_28552.2

ATGATGATGTTATGTAAACCTACTGCCTTCCTAGCAGTAGAGATTTTCTGTGATGATTTCCAGTGGACAGAGCACGGATATCAAAGCTCTGTTATAAAGGTCAGTGGTCATGTTGGTTATATGGATTTTGCATTTTCAGACCTGAAATTCCCAAAGATGAAGTTTAAGGGAGTCAAGCAATCTTCAGTGATAAGAACAAAGACAAAGGAGGTCCCAGAAGATTCTGCTGATTTAAGCATTGGTGGTATGAAATTCCCATACCCTTACAGTGACCAACCAACAGTacaaaaagaagagaagaaaacaacagTCAGCAAagaagagaaacagaaaaagaagacaAGTGTTCCCAGTGTACCAGAGTATAGAATAGTACATCGTGGACACATTGACCTTCAGAACTTTACACATGCAAGAGATTCTAATCAAAGCACAAGACCCAAAGAACTGCTTGTATATATTGATTTGCCGCTGTTGGAATCTGCTGCTCCTGTGGAGTTAGATATTCTTGAGAAGAAGCTCAAGTTGGCCTGCAAGGATCCTCCTTACAATCTAGAAATATCCTTGTtactttattgtatttttaaatgTGGTGTTGACGAAGAAAATGGCTCCGCTaagtttgacaaaagcaaaaggcaacTAACTGTTACATTGCCCGTGTTACCAGCTCTACTGATTGCACAATTGGGTGAAGGAGAAGGAGATGGTACAGAAGAACAGGTTGAAGTTTTACAAAGCACAAATGATGAATTGCTGAATTCAATTCCGTCAAGCGCAGAAGAATTTATTGATAATACTGTGTCACGTGATGAAATGAAGCCAGGTGAAGGTGATTCTACTAAGGATAATTCAGAGGACAACACTAGTGCTGCTTGGTGGAACGAGAAATTACAACGTAATGCAGAGAATGAATTACTTCAGAGTCCCGAGGATGAAGATAGCACAGACATCCGATTCAACCTGCCAAGCTCATCAGATTCAGATTTGTCATCGCCATGTTTCTTTACGTGTCCACCTTACAACTACAACCAGGATGATGACGTCATCACATTCATCATTGACGTGGCAGATGTCGCCCTTGACACAGTCTCTCTCGGTTTCAAGAAAAATAAGGCATACATTAGCTTCCCACACGGTACGCCCCGCCCTGGGGAACTGCCTCCCCCGGATTACGCCCTCTATCTACAGTTCCCGGATGATCATAACCTGGACGCAAATCTCTGTAATATTGACGTCAGCAAGGAGAATCTAGTTCTGAGTCTTCACAAAGAGGGATCCTGCAAAGGAATGTGGGACAGTTTCGAGGCAGGTTCAGGAGAAGATAATTTGGAGACAAAGTTCTTAATAACGGAGAATACGGTGGATATGATGATGAAAGAAATTGCCGCGCAGGATCCGTGGTCCACTGTCGCTACTGATCGGGAAACAAACGTGAAGGTTTCATCTCTGACTGATGACTGCCTTAGTCTTGAGATACAAACCAATCCAGGACACTCCGCACATGAACTGTTGGGATCTCAGTGGAATTCAACAGAAGAGCAGTCAGACAAAACTGAGCACATGGGGGAAAGCATTAGTTCATGCGAGAAAGTGAACGTGGCTGACTTAGCAGAAGAACTTCACAGAACTAAACTAGATGGAAATGATTTTTGTGACAATGAGTGCGAGAATGCGGAGCGTACAGATGTGAAAAGCATAGCGGAATCTGTGAATTCCGATCCAGCGATGAGCGATAGTGAAGCAGCCTGTGCGGAAATGGGAGACAGTTTCGTGCCAGTCGATGTGATAAGTAACGCAGTGAGGAGTCGGCGGTCTATTCTGCGGAGGACTTCCAGCACTTCCACGGATGATTCCATAGGAGACGAGAATGAATTTAACGGGGTACCGGATTCCCCGAGTAAGAAAAATGTACGATTTAACCTCAACCCAAACGTTCGTGTTTTTAGCAACAAAAAggataaaaagaaaaggaaattagAGGCAAAGCTTAAGGCTGAAGCGCAAAAACATTCATTAGAAAGCGAAGGAAGTGGATCTGAACAGAGCAACGGGATGTCGCCCGTTGATAACGGGACGGGATGGGATGGGTTTGATGATCAATCCCTCGGGAAGGGAACTAACGGGATAACTTCTCTTAAAACTCCAGATAATGAAGAGGTTGTCAAGGTAAACGAAAAAGGAGTTGAAATTAGTGATGATCAAACCAAAGGCGATGGTTTTGGCAAACCTTCAAGTTCTTTGTTAAGTGGTTGTGACTCTTTTGGGATGACTAATAATTTAATATTTGAATTAGATGACTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18201 all species →	PIH1_CS	PIH1 CS-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050734 all species →	Family	PIH1 family, Kintoun subfamily	Interproscan
IPR041442 all species →	Domain	PIH1D1/2/3, CS-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22997 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19751	DNAAF2, KTU, PF13; dynein axonemal assembly factor 2	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.