Gene detail

Detailed information of evm.model.contig_28648.4 in Platygyra sinensis

Genomic Location: contig_28648:10067...12404
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_28648.4

AACATGAGTGAGGTCAAAGTCCTCGAGGTGCCTTGTTTTGGACAATCATTTCAGTTGGGGATGCTCTATGATTGTCGAAGTCATCATCTGGTTCAAGGACCAACATTGTGGGAATCTGACATTGTCAAGAATTTATCCGTGTCCCGTGCTTCTCCACAATCCAGGTATGAAGTCTTTACAGGTCACAGCTTGGAAGAGAAAATGGCCATGTTAGGCGCCGATTCTAGCCTAAAACTAAGTTTGATGACCGGGTTGGTCAGGCCATCTGGTACTGGAAACTTCATCCTGGACCGAAAGTCTTCCAAAAAGCAAGCTCGCGTTACTCTCAAGTACGAAAGCACGTCGAAATTTGACGCACTCAGCTTAGATCAGTTGAAGAAAGAAGTGCATAGAGACATAAGCGAAGAGATAACAGCCACGCACTTTGTATCGGGGATTGAATATGGCACACAAGCCGTTTTCGTCTTCGACAGAGATGTCGACGAGAAAGAAAGAAATATCGATGTTGAAAATGACCTGAAATTCACTATCGACTCCTTGCCTCGCTTTGCTGCCGACGGAAGGAGCTCTGTCTGTCCAGATGAGAAGGATGTGGAGGAACTGAAAAAACTAAAGTGCACACTCTATGTAAACCAGACCATGCCCAGTTTCAAGAGTCCCATGAGTTATCAAGATGCAGTTATGGCCTACAGCGCGCTTAAGACAAACGAAGACCCCCAAGTAGGAGAAGTTCCCAAGAAGGTCTGGCTTTACCCGCTTAGCTCACTGGACCGACTGTTGAACGTCCGATGTGGAAAAGCGGTGTCGGAGTACAAAAACAACTTGCTCAAGACCCTATCAAGCTTGTTGCAGGTTGTGAGAAGTGGTGATGAAGTAGAAAAGATCCTTACCGATGTTCTTGACAAGGTTGCTTCATCTCCTTTTCATCGTAGCTACCTCTCGTCTTGGATCAGTGGAAGAGAGAGAGAAGTGAAGCTATTGTCCACTTACTTGGAATACCTCAAAGATGTTCAGCTGATTACGATCGAGTTGTTTGCTTTCTCTGCTGCCAGTTGTGATCAAGACATGACTGAACAGATGTACGCCTTCCTACGAAGTGGAAGCTGGGATCAAGAACGTCTTTCTGCAAAACCGTGGTTTGAAAATCCTGAAATAATTAACGACATCAAGTCCAAAGCAAGAATTTTCAGGGGCTTTGCAAAAGAAAATGAGCGCAACGGAGACACCAAGTTTATCTTCACCAACATTCACAGAAGTACGGACGAGAAATTTGTTACGATTCATCTGTATGAAGATGGTCGGGCATCAGATTTTGAGCCTCCTGGTAAACCGGAAAAGCCTTATGCAACGGAGAAGAGTAACTCAAGTATTACTCTAGAATGGAAGGGGTCACCACTTGGAATAAGCTCTGTCCAAAAGTACACCGTGCACTTTCGGCCTGCTGTCAATGATTCAAGTGGAGAGCCCAGCGAAGAATGGAAGTCTGTCCAGACAGCAGGACCAGAGAATGTTATCATAGTGGATGGTTTGGAAGCAAAAACGGCGTACCTGTTCAAGGTGAACAGTGAGTGTAAAGCAGGTAGGAGTGACATCAGTGACACCAGTGACCCCATCGGAACCAGTTGCAAAGAAAGTGTTGCTCGTCCTCAGACTGGAGGCTCCTCGACTGAATCAGAACTGGTCCAGAATAAAAAGGAAAATTGCGCTTCTGATTTGCAAGCCAGTGGTTCAACTAACAATTTGGCAACCCCTTCCACATCTGCCAGCCATGCTGAAGACTCTGAAAATATGAACATAACCTGTCCAACGCGCCCAACCGACAAGCCTCCTGAGAAAGGGAGGCATGGCGCCTCCAGGGGGGGTAAAAAATCAAAGAGCAAAGGCACGGCATATTTTCTTCCTTATCGACTAGCTGAATCTATGCTTTCTTCATCAAAGAAGATTACAGATGGGTTTCCGTCAGTTTACAAGCTTTCAAGGAACGAACGAATGAGACGAGAGATCAGCATGATTGCCAGACAAAGTATCGGCAAGGTACCCAAACGGGTGAAAGGACGACTCACTGAGAAAGTTCTCATGGTGGTGGGTGCGACAGGAGCTGGAAAAACGACTCTGATCAATGGTATGGTGAACTTCATCTTGGGCGTTGACTAG

Transcript

evm.model.contig_28648.4

GAACATGAGTGAGGTCAAAGTCCTCGAGGTGCCTTGTTTTGGACAATCATTTCAGTTGGGGATGCTCTATGATTGTCGAAGTCATCATCTGGTTCAAGGACCAACATTGTGGGAATCTGACATTGTCAAGAATTTATCCGTGTCCCGTGCTTCTCCACAATCCAGGTATGAAGTCTTTACAGGTCACAGCTTGGAAGAGAAAATGGCCATGTTAGGCGCCGATTCTAGCCTAAAACTAAGTTTGATGACCGGGTTGGTCAGGCCATCTGGTACTGGAAACTTCATCCTGGACCGAAAGTCTTCCAAAAAGCAAGCTCGCGTTACTCTCAAGTACGAAAGCACGTCGAAATTTGACGCACTCAGCTTAGATCAGTTGAAGAAAGAAGTGCATAGAGACATAAGCGAAGAGATAACAGCCACGCACTTTGTATCGGGGATTGAATATGGCACACAAGCCGTTTTCGTCTTCGACAGAGATGTCGacgagaaagaaagaaatatcgatgttgaaaatgacctgaaattcACTATCGACTCCTTGCCTCGCTTTGCTGCCGACGGAAGGAGCTCTGTCTGTCCAGATGAGAAGGATGTGGAGGAACTGAAAAAACTAAAGTGCACACTCTATGTAAACCAGACCATGCCCAGTTTCAAGAGTCCCATGAGTTATCAAGATGCAGTTATGGCCTACAGCGCGCTTAAGACAAACGAAGACCCCCAAGTAGGAGAAGTTCCCAAGAAGGTCTGGCTTTACCCGCTTAGCTCACTGGACCGACTGTTGAACGTCCGATGTGGAAAAGCGGTGTCGGAGTACAAAAACAACTTGCTCAAGACCCTATCAAGCTTGTTGCAGGTTGTGAGAAGTGGTGATGAAGTAGAAAAGATCCTTACCGATGTTCTTGACAAGGTTGCTTCATCTCCTTTTCATCGTAGCTACCTCTCGTCTTGGATCAGTGGAAGAGAGAGAGAAGTGAAGCTATTGTCCACTTACTTGGAATACCTCAAAGATGTTCAGCTGATTACGATCGAGTTGTTTGCTTTCTCTGCTGCCAGTTGTGATCAAGACATGACTGAACAGATGTACGCCTTCCTACGAAGTGGAAGCTGGGATCAAGAACGTCTTTCTGCAAAACCGTGGTTTGAAAATCCTGAAATAATTAACGACATCAAGTCCAAAGCAAGAATTTTCAGGGGCTTTGCAAAAGAAAATGAGCGCAACGGAGACACCAAGTTTATCTTCACCAACATTCACAGAAGTACGGACGAGAAATTTGTTACGATTCATCTGTATGAAGATGGTCGGGCATCAGATTTTGAGCCTCCTGGTAAACCGGAAAAGCCTTATGCAACGGAGAAGAGTAACTCAAGTATTACTCTAGAATGGAAGGGGTCACCACTTGGAATAAGCTCTGTCCAAAAGTACACCGTGCACTTTCGGCCTGCTGTCAATGATTCAAGTGGAGAGCCCAGCGAAGAATGGAAGTCTGTCCAGACAGCAGGACCAGAGAATGTTATCATAGTGGATGGTTTGGAAGCAAAAACGGCGTACCTGTTCAAGGTGAACAGTGAGTGTAAAGCAGGTAGGAGTGACATCAGTGACACCAGTGACCCCATCGGAACCAGTTGCAAAGAAAGTGTTGCTCGTCCTCAGACTGGAGGCTCCTCGACTGAATCAGAACTGGTCcagaataaaaaggaaaattgcGCTTCTGATTTGCAAGCCAGTGGTTCAACTAACAATTTGGCAACCCCTTCCACATCTGCCAGCCATGCTGAAGACTCTGAAAATATGAACATAACCTGTCCAACGCGCCCAACCGACAAGCCTCCTGAGAAAGGGAGGCATGGCGCCTCCAGGGGGGGTAAAAAATCAAAGAGCAAAGGCACGGCATATTTTCTTCCTTATCGACTAGCTGAATCTATGCTTTCTTCATCAAAGAAGATTACAGATGGGTTTCCGTCAGTTTACAAGCTTTCAAGGAACGAACGAATGAGACGAGAGATCAGCATGATTGCCAGACAAAGTATCGGCAAGGTACCCAAACGGGTGAAAGGACGACTCACTGAGAAAGTTCTCATGGTGGTGGGTGCGACAGGAGCTGGAAAAACGACTCTGATCAATGGTATGGTGAACTTCATCTTGGGCGTTGACTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF18078 all species →	Thioredoxin_11	Thioredoxin-like SNTX domain	Domain	Interproscan
PF21109 all species →	Stonustoxin_helical	Stonustoxin helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR040581 all species →	Domain	SNTX, thioredoxin-like domain	Interproscan
IPR052090 all species →	Family	Cytolytic pore-forming toxin	Interproscan
IPR048997 all species →	Domain	Stonustoxin-like, helical domain	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31594 all species →	AIG1-TYPE G DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_28648.4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.