Gene detail

Detailed information of evm.model.contig_28716.4 in Platygyra sinensis

Genomic Location: contig_28716:46598...62338
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_28716.4

ATGGGGGAAGGAGCGATCGATGTAAGCGTTATTGAGTACTTTCAGACAGGGATTTCGCTGGATAAGAAAAAGAAAAGAAAAATTCTTGACTTGTTTAAGTATTTAGCAGGGGGCGAGAGTCCAATAGAAGCGGTAGAACTGACTGTTCGTCGAGATCGGAATCTTCGCGAAGGACAGCTGAAGGCTGTTTACGAGATGGTGAAACTGGTCGAAAACGCACCTACTTTGAAAACAGGGAGCCCTGAGAAGAAACTGCTCCTTGGTGTTCTGATTAGCACAAATCTTCTTAACTTTGTCGTCAGACTTTTGTGGATTCGAATTCCTGACGAATGTACAGAAAAGAATGTAGAACCATGGAATGCAGCACATTTTAACAGTTTAATGGTCTTGAAGCACATTTTAACTCTGCCTCATTACACTCAAACAAATCGTACCCAAATCATGGAAAATAATACTGTGGAAGCTCTGTTGGACTTCTGTGATGCCGACCTTGATCTTTTGGGTTGTTACCCAGCAGTTTGTGCCTTAAAAACCCTGTGTTGTCTGGAACATGTAGCTTGTGACAGAATTGTCTTCTTAAATGCACTTTCGAAAATTGGAAATCTGATTTTGAAAGACAATTGCCAGAAAATGATTGTCAAGGCGTACAGACGTGAACTTAAACCTTACGAAAAACGTGTCTTAGAGGACCGGTTTGATCAGTCTGAAGAAAATTTTAAAGTTATTCAGGTGCCGTCCATTGCTGATCGTGCATTGAATGTGTTACGTTCTTGGAGCTGGAAAATGCAGATGGCGGCAACTGTAATTATTCTTCAGATTGCAGAGCAGAATGATCGATACAGAAAACTGGTTTTTAAAGATAAAATAATATGGAAGGCTCTGGTAAAGTGGTGTCAAACCCCAATAGTTACTGCAAATGACAGTAACATGTCAGCAATGTGTATGAAGATCATTGGCAAGTTGTGCCTGAGTGAAGAGCTGAGTTGGCAAATGATTGACAAGAATGGACTTGTGACGTACCTGGAAGATGGAGTACATTTGTCTAATAATGGGCCATTGAATGCTTATCTGGAGGTGATATTGCAACTTTCCACTCACGGTGGTCGATGCCGAAACAAAATACTGGAGAGTGAGGAAATCCTCCAGACACTTGCAAGGTACATGTTGTCTTATCACAAAGAGATTCAAGGTCCAACATTACGCATCATCGCAAACCTGGCAGAATCTGAAGACATGGCTAAGAACTTGATAAAGTGTGGCATTACTCCTAAGACTACCACATTGGTCATCACAGGTTATCAGCAACCTGCTATCAGCATTGCTCAGAAGATAGAGAAAGTTCTCCAAAGAACTTGTGAAAAAGAATGGAGAGAGGAAGACATCGCATTTGGAAAAGAGCGTTTAGATTTCTTTAAACGCCGAAATGAAGACAAAGCCCAGAGTCTAAAAGATGAGGGCAACAAAAAGTTCAAGTTAGGGTTGTTTAGCGATGCAGTGAGACTTTACACAATGGCATTAAAGTTTGTGCCTCCCTGTTTGGAGATCAGCAATGCACGAAAAGATGGGAGTCGATGGTGGGTGTTACCAGCTGTGTTGTACAGTAACCGGGCCCAATGTCACTTAAACAACTCTGATTGGGACAGCGCTCTGCATGACTGCAATGAGGCCATGGCAAGATGCCTTGAAGACAATGAAGAGTCGGACAAAATACTTGTAAAAACAATGTTCCGTCGCTCCAGGGCGTTCACGGAGTTAGGATATTACTTCAGAGCATTGAATGATATCTCGTACTGTCTGAGAAACCAAGCACAACAGATCGCGGTCAAATACCGTAAGGCGTGTGGCATGGAGCCAATCCGTCGCTGTGGCAACTGCCTTGGTGGGGAAGGAGAAAAGTTGAAAAGATGCGCTAATTGCGAAGAGGCATACTGCAGCCGTGAGTGTCAAGCGTTGTCCTGGGAATTAGGTCATAAGAACCTCTGCAACAAGTGA

Transcript

evm.model.contig_28716.4

ATGGGGGAAGGAGCGATCGATGTAAGCGTTATTGAGTACTTTCAGACAGGGATTTCGCTggataagaaaaagaaaagaaaaattcttgACTTGTTTAAGTATTTAGCAGGGGGCGAGAGTCCAATAGAAGCGGTAGAACTGACTGTTCGTCGAGATCGGAATCTTCGCGAAGGACAGCTGAAGGCTGTTTACGAGATGGTGAAACTGGTCGAAAACGCACCTACTTTGAAAACAGGGAGCCCTGAGAAGAAACTGCTCCTTGGTGTTCTGATTAGCACAAATCTTCTTAACTTTGTCGTCAGACTTTTGTGGATTCGAATTCCTGACGAATGTACAGAAAAGAATGTAGAACCATGGAATGCAGCacattttaacagtttaatGGTCTTGAAGCACATTTTAACTCTGCCTCATTACACTCAAACAAATCGTACCCAAATCATGGAAAATAATACTGTGGAAGCTCTGTTGGACTTCTGTGATGCCGACCTTGATCTTTTGGGTTGTTACCCAGCAGTTTGTGCCTTAAAAACCCTGTGTTGTCTGGAACATGTAGCTTGTGACAGAATTGTCTTCTTAAATGCACTTTCGAAAATTGGAAATCTGATTTTGAAAGACAATTGCCAGAAAATGATTGTCAAGGCGTACAGACGTGAACTTAAACCTTACGAAAAACGTGTCTTAGAGGACCGGTTTGATCAGTCTgaagaaaattttaaagttaTTCAGGTGCCGTCCATTGCTGATCGTGCATTGAATGTGTTACGTTCTTGGAGCTGGAAAATGCAGATGGCGGCAACTGTAATTATTCTTCAGATTGCAGAGCAGAATGATCGATACAGAAAACTGGTTTTTAAAGATAAAATAATATGGAAGGCTCTGGTAAAGTGGTGTCAAACCCCAATAGTTACTGCAAATGACAGTAACATGTCAGCAATGTGTATGAAGATCATTGGCAAGTTGTGCCTGAGTGAAGAGCTGAGTTGGCAAATGATTGACAAGAATGGACTTGTGACGTACCTGGAAGATGGAGTACATTTGTCTAATAATGGGCCATTGAATGCTTATCTGGAGGTGATATTGCAACTTTCCACTCACGGTGGTCGATGCCGAAACAAAATACTGGAGAGTGAGgAAATCCTCCAGACACTTGCAAGGTACATGTTGTCTTATCACAAAGAGATTCAAGGTCCAACATTACGCATCATCGCAAACCTGGCAGAATCTGAAGACATGGCTAAGAACTTGATAAAGTGTGGCATTACTCCTAAGACTACCACATTGGTCATCACAGGTTATCAGCAACCTGCTATCAGCATTGCTCAGAAGATAGAGAAAGTTCTCCAAAGAACTTGTGAAAAAGAATGGAGAGAGGAAGACATCGCATTTGGAAAAGAGCGTTTAGATTTCTTTAAACGCCGAAATGAAGACAAAGCCCAGAGTCTAAAAGATGAGGGCAACAAAAAGTTCAAGTTAGGGTTGTTTAGCGATGCAGTGAGACTTTACACAATGGCATTAAAGTTTGTGCCTCCCTGTTTGGAGATCAGCAATGCACGAAAAGATGGGAGTCGATGGTGGGTGTTACCAGCTGTGTTGTACAGTAACCGGGCCCAATGTCACTTAAACAACTCTGATTGGGACAGCGCTCTGCATGACTGCAATGAGGCCATGGCAAGATGCCTTGAAGacAATGAAGAGTCGGACAAAATACTTGTAAAAACAATGTTCCGTCGCTCCAGGGCGTTCACGGAGTTAGGATATTACTTCAGAGCATTGAATGATATCTCGTACTGTCTGAGAAACCAAGCACAACAGATCGCGGTCAAATACCGTAAGGCGTGTGGCATGGAGCCAATCCGTCGCTGTGGCAACTGCCTTGGTGGGGAAGGAGAAAAGTTGAAAAGATGCGCTAATTGCGAAGAGGCATACTGCAGCCGTGAGTGTCAAGCGTTGTCCTGGGAATTAGGTCATAAGAACCTCTGCAACAAGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01753 all species →	zf-MYND	MYND finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR002893 all species →	Domain	Zinc finger, MYND-type	Interproscan
IPR052769 all species →	Family	Tetratricopeptide repeat domain-containing protein	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46014 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_28716.4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.