Gene detail

Detailed information of evm.model.contig_28892.1 in Platygyra sinensis

Genomic Location: contig_28892:537...8377
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_28892.1

ATGTTTCTGTTTGCATTGTGGTTGGTGCTTAAGGAAAAGAAACTGGAGAATTACAAAGGAGGAGAGATGTTTGAGACCATATTTGCAGGCCGCTATGTAATTCTGTTGATGGGACTGTTTTCAATGTATACTGGCCTCATATACAATGACTGCTTTTCAAAGTCCTTCAATATCTTTGGCACTGCATGGGATCTTAGTGTAGATTGGGATGGCATCAGTAAAGAGACCCTTGACGCATACCAAAATACATCCAAAGCAATCTTTCTTGACCCAAAGAAGACATACCGAGGGATTCCCTACTTCTTTGGTATTGATCCAGTTTGGCAAGAAGCTGTGAACAAGCTCACATTCACCAACTCATTCAAAATGAAGATGTCTATTGTGTTTGGTGTAGCACATATGATGTTTGGTGTTTGCCTGAGTTTCTTTAATCACAGCTTTCTGATCATTGGCAAGGATGCTTTCGAGGTCCACAATGGCCTTCCCTTTCAAAGCGATGAAGAAAAAGCAGACATAAACAAAGTGCTGGAGTTATGGGCAAATCATTGCATCGGGAAAACAAATATCATCTACGAGAGATATAAATTCAATAATCGCTCACAGGAACAAGCTGAATCAATCGACACTTACATCACTACGCTTAGAGCGCTCGCCGAAACTTGCGAGTTTGGAACCTTGAAAGATGACCTTATCCGCGATAGAATCGTTTGTGGTGTCCGTGAGAATGGCATACGAAGAAAACTACTACAAGAATCTGGTTTAACGCTGTCGAAATGTGTTGACATCTGTCGAGCGAATGAGGCTACCGCAGCACAGCTGAAAGACATGGCGCCGACTCAAATTACCGAACAAGAAGCGAACGCAGTCAACCAGAAAGAAAGTTCCAAGAAGCCGAAGACACCCAAAGAAAATGGTAAAGATCCAAAAGATCAGCTAAGCGTCGAATGCAAATACTGTGGTAATAAGCACGAGCGGAAACGAGACAAATGCCCTGCATACGGAAAAACATGCTCTTCGTGTGGAAAAGCGAACCATTTTGCAGCAAAGTGTTCCAAGAATTCCCGCGAATCTAAGAAGAAGCGTTCTCAGAAGTTTAAACGCAAGAAAGTGAACCAGCTCGATGACATCACAGAGTCTTCTTATTCTTCAGAAGAAGAGATCTTGTCTGTGTCGTTGGACCACACCGCGAACGCCGTGAATATGTCAAATTTCAAGAACAAAATTTTCGCCCACATGGAGATTGCAAACGAGTTAGTGAAGATGCAAGTCGATTCAGGAGCGTCCTGCAATGTGTTACCCCGTAAATTTCTTCCAAGGGACACTGAAATTAAGAAGACCAACCTGAAGTTAACCACGTATTCTAAAGCGAATTTGAAGGTGCTGGGTTTGGCAAAAATATCCCTGCGAAATCCAAAGAACAATAAAAAGTATCGTGCTGAATTTGCAATCATTGAGGAAGATTACACTCCACTTCTTGGCTCTTCAGCAGCACAACAAATGGGACTAATAACTGTCCAGCAGGAAAACATCTTGCAAGTTAAGGAAAGTTATCAGGAACTTAATATGGAGAGAATCACTGCGACTTACCCTGATGTCTTTCAAGGTCTGGGTTGTATGGAAGGAGCTCTTCACCTAGAAGTTGATGAGAGTGCTTCGCCTTCAATCATGCCTCCCCGTCGTGTGCCTCTCGCCCTGAAAGAAAGGCTGAAAGAGGAGCTAGCCCGCTTAGAAAAAGCCAATGTGATAAAGAAAGAAGAAGAACCAACAGACTGGGTATCTAGCCTTGTTGTAACCGAGAAACCAAATGGCAAATTAAGAGTGTGCATCGACCCTCAGCATCTTAATAAAGCCCTCAAGAGAAGTCACTATCCGCTGCCAGTAATCGAGGACATTCTCCCAGAACTAGCTGATGTCAAGGTATTCTCGAAAGCAGACCTTAAAGATGGATTCTTACAGATACAGCTTGACCAGGAATCCAGCAAGCTAACAACGTTCCAGACCCCCTGGGGCCGGTACAAATATCTGCGGATGCCCTTCGGAATCTCCCCTGCTCCAGAATGTTTTCAGCGGAAGTTGGACCAACAACTTGAAGGTCTTGAAGGAATCTACAAGGTGGCAGATGACATCTTAATTACCGGCCGTGGCACAAGCAAAGAAGAAGCCGTGAAAAACCATGATGCCAATTTACTGAAGTTGTTAGAGAGATGCCGGGAGAAGAATTTGAAGCTAAACCGAGAGAAACTACAGCTGAAATGTACAGAGACCCCCTTTATTGGCCATGTACTAACGCCTGAAGGAATCAAACCTGACCCTGGAAAGGTAGAGGCTGTACTTAAGATGGAAAGACCCAGTGATGTAGCAGCAGTCCGAAGACTGGTAGGCTTAGTCAACTACTTGTCAAAATTTCTAAGCAAGCTTTCAGAACTGTGTGAACCACTAAGACGACTCACCCACAAGGGCGTCGAGTGGAACTGGTCAACCGAGCAAGAGAAAGCCTTTGAAAGTGTGAAGCAAGCTGTTACCTCAGCTCCGATTCTGCGATATTTCAATTCCAGTGAACCTGTTGAAGGTCAGGGAGATGCTTCTGCCAATGGCATAGGATTTGTGCTTATGCAGAATGGTCAACCAGTATCCTATTCAAGTAGAGCCCTCACCACAAGTGAAAGGAACTATTCTCAAATTGAGAAAGAACTGTTGGCCCAAGTCTTTGGTGTTGAGCGTAATCATCAGTATGTCTATGGCCGAAAAGTCGTGCTGTGGTCAGACCATAAACCTTTGGAAACTATCTCTAAGAAGCCCTTAGCAACAGCGCCTAAACGCCTGCAAAGGTTGCTTCTACGATTACAGCAATACGATGTTGAGATCCGTTACAAACCTGGCCCTGAAATGTATTTGGCAGACACCTTGTCACGTGCCTATCTACCTACAACTGCCCGCTCCCCAGCTGAAGAAGAGACGGAAAGAATCCATGCAGTTGATTTCTTACCCATTTCAGAACCCCAGTTGGCTGAGATCCAGCATGAAACAGCAGCAGACCCAGTAATACAGTCCCTCATTCAAGTAATATTGCAAGGCTGGCCAGATCAGAAAGAAGCCCTACCCTCAGAGTTACACCCCTACTTCACTGTGAGAGATGAACTTACTGCCCAGGATGGAATCCTCTTCAAAGGTTTAAGATGTGTAATCCCTGCCAGCCTGAGGCCCAAGATACGTGAACGACTCCATGGTGCCCACACAGGAGTTGAAGGCTGTCTTCGACGTGCGCGTGAAACAGTCTATTGGCCTGGCATGAACGCTGACCTTCGGGACTACATAGCAAAGTGTGGCGTGTGTGCTACTTACCAGAAAGATCAGCAGAAGGAACCACTTATCTCGCACAAAATTCCAAACCGTCCATGGGAAACAGTTGGATGCGATATCTTCCATTTTGAAGACAGAGACTACCTCTGCACAGTAGATTACTATTCCAGCTACTTTGAAATCAATCAACTCAAGGACAAGACTGGCAATGAAGTGATCAGAACCCTGAAGAGACACTTCTCCACACATGGAATCCCCAACAAGCTGCAGAGTGACAATGGTCCTCCCTATAGTTCTCGTGAGTTCCAACAGTTTATGACAGCCTATGACATTGAACATGTTACTAGTTCTCCGCATTACCCACAAAGTAATGGCAAGGTAGAAAATGCTATCAAAACAGCCAAGAATCTGCTAAAGAAATCCAAGGCAGCTGGAACAGACTTCCACCTAGCTCTATTAGCATGGAGAAATACACCCTCTGAAGGCCTTGAAAGTTCTCCAGCTCAAAGAATGTTTGGTCGTCGCACTAGGACACTGATTCCTACAACCAGTGAGCTCCTGAAACCCAAAATAGTTGAGGATGTTCAAGGAAAGCTCTTGAGGAGAAAGCAACTGCAAGCCAAACACTACAACATCAGTGCCAAGGAACTTCCCCCCCTTTTCAAAGGAGAAATCGTGCGTGTCAAACCTACAGATAGGTCTGGTAGATGGTTCAAAGCGCGTGTAGAGCAGCAAGTAGATGTGAGATCCTATGAAGTCAGGACTGAAGACGGAAGGATCCTCAGGAGAAATAGAAGGCACCTCAGAAGCAGTAAGGAGCCAGCATGCGTTAGAGTCAACCCTGAGCCCATCCACATGCCGAATCAGACTCACCTGCCGGAAAGTCTCACCATCCCCAAACCTACTGTCAGTCCTCAGGAAGCCAGTGCCCCCCTGGAGGTACCACCGCCTAAGGGACCCAGAGAAATGACTTGTTCCAAGAAACCTGAGAACAGTTCCCAGACTGGTAAAGTGCCAGACCAGTCCTCATCTCCCAAACCAGCTGACTGTCCAGTTACCCGAAGTGGCCGAATGTCCCGACCACCAAGTTATCTTAAGGACTTTGTTATTGCCAAGTGA

Transcript

evm.model.contig_28892.1

ATGTTTCTGTTTGCATTGTGGTTGGTGCTTAAGGAAAAGAAACTGGAGAATTACAAAGGAGGAGAGATGTTTGAGACCATATTTGCAGGCCGCTATGTAATTCTGTTGATGGGACTGTTTTCAATGTATACTGGCCTCATATACAATGACTGCTTTTCAAAGTCCTTCAATATCTTTGGCACTGCATGGGATCTTAGTGTAGATTGGGATGGCATCAGTAAAGAGACCCTTGACGCATACCAAAATACATCCAAAGCAATCTTTCTTGACCCAAAGAAGACATACCGAGGGATTCCCTACTTCTTTGGTATTGATCCAGTTTGGCAAGAAGCTGTGAACAAGCTCACATTCACCAACTCATTCAAAATGAAGATGTCTATTGTGTTTGGTGTAGCACATATGATGTTTGGTGTTTGCCTGAGTTTCTTTAATCACAGctttctgatcattggCAAGGATGCTTTCGAGGTCCACAATGGCCTTCCCTTTCAAAGCGATGAAGAAAAAGCAGACATAAACAAAGTGCTGGAGTTATGGGCAAATCATTGCATCGGGAAAACAAATATCATCTACGAGAGATATAAATTCAATAATCGCTCACAGGAACAAGCTGAATCAATCGACACTTACATCACTACGCTTAGAGCGCTCGCCGAAACTTGCGAGTTTGGAACCTTGAAAGATGACCTTATCCGCGATAGAATCGTTTGTGGTGTCCGTGAGAATGGCATACGAAGAAAACTACTACAAGAATCTGGTTTAACGCTGTCGAAATGTGTTGACATCTGTCGAGCGAATGAGGCTACCGCAGCACAGCTGAAAGACATGGCGCCGACTCAAATTACCGAACAAGAAGCGAACGCAGTCAACCAGAAAGAAAGTTCCAAGAAGCCGAAGACACCCAAAGAAAATGGTAAAGATCCAAAAGATCAGCTAAGCGTCGAATGCAAATACTGTGGTAATAAGCACGAGCGGAAACGAGACAAATGCCCTGCATACGGAAAAACATGCTCTTCGTGTGGAAAAGCGAACCATTTTGCAGCAAAGTGTTCCAAGAATTCCCGCGAATCTAAGAAGAAGCGTTCTCAGAAGTTTAAACGCAAGAAAGTGAACCAGCTCGATGACATCACAGAGTCTTCTTATTCTTCAGAAGAAGAGATCTTGTCTGTGTCGTTGGACCACACCGCGAACGCCGTGAATATGTCAAATTTCAAGAACAAAATTTTCGCCCACATGGAGATTGCAAACGAGTTAGTGAAGATGCAAGTCGATTCAGGAGCGTCCTGCAATGTGTTACCCCGTAAATTTCTTCCAAGGGACACTGAAATTAAGAAGACCAACCTGAAGTTAACCACGTATTCTAAAGCGAATTTGAAGGTGCTGGGTTTGGCAAAAATATCCCTGCGAAATCCAAAGAACAATAAAAAGTATCGTGCTGAATTTGCAATCATTGAGGAAGATTACACTCCACTTCTTGGCTCTTCAGCAGCACAACAAATGGGACTAATAACTGTCCAGCAGGAAAACATCTTGCAAGTTAAGGAAAGTTATCAGGAACTTAATATGGAGAGAATCACTGCGACTTACCCTGATGTCTTTCAAGGTCTGGGTTGTATGGAAGGAGCTCTTCACCTAGAAGTTGATGAGAGTGCTTCGCCTTCAATCATGCCTCCCCGTCGTGTGCCTCTCGCCCTGAAAGAAAGGCTGAAAGAGGAGCTAGCCCGCTTAGAAAAAGCCAATGTgataaagaaagaagaagaaccaACAGACTGGGTATCTAGCCTTGTTGTAACCGAGAAACCAAATGGCAAATTAAGAGTGTGCATCGACCCTCAGCATCTTAATAAAGCCCTCAAGAGAAGTCACTATCCGCTGCCAGTAATCGAGGACATTCTCCCAGAACTAGCTGATGTCAAGGTATTCTCGAAAGCAGACCTTAAAGATGGATTCTTACAGATACAGCTTGACCAGGAATCCAGCAAGCTAACAACGTTCCAGACCCCCTGGGGCCGGTACAAATATCTGCGGATGCCCTTCGGAATCTCCCCTGCTCCAGAATGTTTTCAGCGGAAGTTGGACCAACAACTTGAAGGTCTTGAAGGAATCTACAAGGTGGCAGATGACATCTTAATTACCGGCCGTggcacaagcaaagaagaagccGTGAAAAACCATGATGCCAATTTACTGAAGTTGTTAGAGAGATGCCGGGAGAAGAATTTGAAGCTAAACCGAGAGAAACTACAGCTGAAATGTACAGAGACCCCCTTTATTGGCCATGTACTAACGCCTGAAGGAATCAAACCTGACCCTGGAAAGGTAGAGGCTGTACTTAAGATGGAAAGACCCAGTGATGTAGCAGCAGTCCGAAGACTGGTAGGCTTAGTCAACTACTTGTCAAAATTTCTAAGCAAGCTTTCAGAACTGTGTGAACCACTAAGACGACTCACCCACAAGGGCGTCGAGTGGAACTGGTCAACCGAGCAAGAGAAAGCCTTTGAAAGTGTGAAGCAAGCTGTTACCTCAGCTCCGATTCTGCGATATTTCAATTCCAGTGAACCTGTTGAAGGTCAGGGAGATGCTTCTGCCAATGGCATAGGATTTGTGCTTATGCAGAATGGTCAACCAGTATCCTATTCAAGTAGAGCCCTCACCACAAGTGAAAGGAACTATTCTCAAATTGAGAAAGAACTGTTGGCCCAAGTCTTTGGTGTTGAGCGTAATCATCAGTATGTCTATGGCCGAAAAGTCGTGCTGTGGTCAGACCATAAACCTTTGGAAACTATCTCTAAGAAGCCCTTAGCAACAGCGCCTAAACGCCTGCAAAGGTTGCTTCTACGATTACAGCAATACGATGTTGAGATCCGTTACAAACCTGGCCCTGAAATGTATTTGGCAGACACCTTGTCACGTGCCTATCTACCTACAACTGCCCGCTCCCCAGCTGAAGAAGAGACGGAAAGAATCCATGCAGTTGATTTCTTACCCATTTCAGAACCCCAGTTGGCTGAGATCCAGCATGAAACAGCAGCAGACCCAGTAATACAGTCCCTCATTCAAGTAATATTGCAAGGCTGGCCAGATCAGAAAGAAGCCCTACCCTCAGAGTTACACCCCTACTTCACTGTGAGAGATGAACTTACTGCCCAGGATGGAATCCTCTTCAAAGGTTTAAGATGTGTAATCCCTGCCAGCCTGAGGCCCAAGATACGTGAACGACTCCATGGTGCCCACACAGGAGTTGAAGGCTGTCTTCGACGTGCGCGTGAAACAGTCTATTGGCCTGGCATGAACGCTGACCTTCGGGACTACATAGCAAAGTGTGGCGTGTGTGCTACTTACCAGAAAGATCAGCAGAAGGAACCACTTATCTCGCACAAAATTCCAAACCGTCCATGGGAAACAGTTGGATGCGATATCTTCCATTTTGAAGACAGAGACTACCTCTGCACAGTAGATTACTATTCCAGCTACTTTGAAATCAATCAACTCAAGGACAAGACTGGCAATGAAGTGATCAGAACCCTGAAGAGACACTTCTCCACACATGGAATCCCCAACAAGCTGCAGAGTGACAATGGTCCTCCCTATAGTTCTCGTGAGTTCCAACAGTTTATGACAGCCTATGACATTGAACATGTTACTAGTTCTCCGCATTACCCACAAAGTAATGGCAAGGTAGAAAATGCTATCAAAACAGCCAAGAATCTGCTAAAGAAATCCAAGGCAGCTGGAACAGACTTCCACCTAGCTCTATTAGCATGGAGAAATACACCCTCTGAAGGCCTTGAAAGTTCTCCAGCTCAAAGAATGTTTGGTCGTCGCACTAGGACACTGATTCCTACAACCAGTGAGCTCCTGAAACCCAAAATAGTTGAGGATGTTCAAGGAAAGCTCTTGAGGAGAAAGCAACTGCAAGCCAAACACTACAACATCAGTGCCAAGGAACTTCCCCCCCTTTTCAAAGGAGAAATCGTGCGTGTCAAACCTACAGATAGGTCTGGTAGATGGTTCAAAGCGCGTGTAGAGCAGCAAGTAGATGTGAGATCCTATGAAGTCAGGACTGAAGACGGAAGGATCCTCAGGAGAAATAGAAGGCACCTCAGAAGCAGTAAGGAGCCAGCATGCGTTAGAGTCAACCCTGAGCCCATCCACATGCCGAATCAGACTCACCTGCCGGAAAGTCTCACCATCCCCAAACCTACTGTCAGTCCTCAGGAAGCCAGTGCCCCCCTGGAGGTACCACCGCCTAAGGGACCCAGAGAAATGACTTGTTCCAAGAAACCTGAGAACAGTTCCCAGACTGGTAAAGTGCCAGACCAGTCCTCATCTCCCAAACCAGCTGACTGTCCAGTTACCCGAAGTGGCCGAATGTCCCGACCACCAAGTTATCTTAAGGACTTTGTTATTGCCAAGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF01496 all species →	V_ATPase_I	V-type ATPase 116kDa subunit family	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR002490 all species →	Family	V-type ATPase, V0 complex, 116kDa subunit family	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0033179 all species →	Cellular Component	proton-transporting V-type ATPase, V0 domain	Interproscan
GO:0046961 all species →	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_28892.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.