Gene detail

Detailed information of evm.model.contig_29331.4 in Platygyra sinensis

Genomic Location: contig_29331:41714...57831
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_29331.4

ATGATCCAAGGTCGAGGTATGGGTTATCAGTTGAAGCAGAAGGCTAAGGGATTTAGTTTTGCAATTTACAAGGCAGGGACAAGGCCATGTCATTTGTCAAACCAACTCCTTGTACACGCCCTCATTAACTTCGCTGTTGGCTCACTACTGTGGTATTTTGTGGGCTACTCTCTGTCATTTGGACCATCGCAGAAGGGCTTAATTGGTAGCCTGGATGATGCATTCTTTTTTGGTCTGTCTGGCACCAACTGCTCGTCACATTCTGATTCTGTTCCAGGAATTCTTTTTGCAAGTTTTGAAATGATGCTTGCTATTATTACCCCATTTATGCTGCTATCTGAATGGACACAACAAATGAACATTCTTGGAGCGTTGATTATTTATTTGTTGTGGCCAATTTTTGTGTACTACCCCATGACTCACTGGATAAGAGGAAAAGGTTGGCTTCACCAGCACTTTAGAATTGTTGATCAAGCTGGGAGCTTGACTGTGCATACTTCAACAGGGTCATCTGCTCTTGTTTTCACCAAGATCCTTAAAGATCAGGTTCATGAAAACCATAAACAGAAACAAAACCAGGAGAATAAGCACCTGCATCCTCAAAATGTGTTTCTTATTGTTGGAGTGTTAATGACCTCTCTTGGATGGTACTCTGTAAATATTGGATCTATACACAAGTTCAATGATGCTGTGATTGTTTCATTTATTAACTCCCACCTTGCTGTCTGTGCATCTTTACTGAGCTCGTTAATAGTGACTTATTTGACAAGGAGGAACTTAAACATGACAGAACTTCTACAAGGGATCATGATCGGTCTCGTAGGTGTAAGTGCATCTTGTGGTTCCATCGAGGTGTGGGCTTCTTTGATCATTGGACTTGTCGTAGGTCTTATATCATCTCTTGTCTCATGGTTAATTCAGAAATACCAACCTTTACGGACCAGCACAGGGGCGCATGACATCACATATACCCATGGCGTTCCTGGTATTCTTGGAGCAGTGGCAGCTGGTCTGTTCAGCAAGTCGTCTCAGGATGTGACAAGTGCCGATGGCGCTTTCTATTCCAACGGTGCTCAGTTAGGTGTCCAGTTACTGGGCGTGCTTGTAACAGTCACGTGGTTGGCTTTAATTCAATTACTACAAACGAAGCCTTTTGGCTCTATGAGGACCCAGAATAAATCAACATCATTTGCTCTGAGCAAAGAAAAGGAGTCTCTTCACAAAAAGCTTTTCAAGGCCGTGGCTGCCGGTGATTTACAAGAACTAGACGCCTTGCTCGCGAATCAAGTGTCTTTTGGAGTGCAGAACTTTGACAAACGAACGCCACTTCACGTGGCCTCCATGCATGGTCATCTCCATTGCGTTAAGTTCCTTCTGCGACAGCCTGGTGTAGACATTCACGCGAGAGACCGCTGGAGAGCATCACCGCTTTCTGAAGCTGTCCAGTCTGGTCATGACCAAGTGGTGCAGTGTCTGTTACGACACGGGGCTGGCTGGTGTGAAGATGGAGTGGGTGATGTGCTGTGTAGCGCTGTGGTGAAAAATGACTCGGAGGAGCTTCATCGTCTTGTATCACTGGGTGTGGATGTTAATGCACCAAACTTTGACGGTAGCACGGCGCTTCATGTTGCAGCCACTGCAGGCAGTCGAGGAGTAGTGCAGTACCTCACTGATCACAGAGCAGATATCAATGCTGTTGACTCGTTAGGAAATACACCTTTGAATTACTCGGACATGCATGAGCATCGTGCGGTCAGCCAGTTATTGGAGGGTCTGGGCGCCAGAAGGTTATCGCATCATTACAGCATGCACGAAATCTGTGAAGTGGCCAGCACAGGAAATCTACAGATGCTGCGACACATGGTGCATAATGGCGCCACAGTCTGCTACAGAGATTTTAACAAACGGACGCCATTACACGTCAGTGCAGCTGAAGGCCATTTGGACGTGGTTAAGTTTCTTCTGTTGCAGCCTGGGACCAACATCAACTCTAGAGACAAAAACGACTTCACTCCACTTCTCGCTCTCCTTACACAAGACGAAGGACATGAGAGTCGTGAAAACCTGACAGCTGCATCCCACTCAACACTGTTTGTTGATATTTAA

Transcript

evm.model.contig_29331.4

ATGATCCAAGGTCGAGGTATGGGTTATCAGTTGAAGCAGAAGGCTAAGGGATTTAGTTTTGCAATTTACAAGGCAGGGACAAGGCCATGTCATTTGTCAAACCAACTCCTTGTACACGCCCTCATTAACTTCGCTGTTGGCTCACTACTGTGGTATTTTGTGGGCTACTCTCTGTCATTTGGACCATCGCAGAAGGGCTTAATTGGTAGCCTGGATGATGCATTCTTTTTTGGTCTGTCTGGCACCAACTGCTCGTCACATTCTGATTCTGTTCCAGGAATTCTTTTTGCAAGTTTTGAAATGATGCTTGCTATTATTACCCCATTTATGCTGCTATCTGAATGGACACAACAAATGAACATTCTTGGAGCGTTGATTATTTATTTGTTGTGGCCAATTTTTGTGTACTACCCCATGACTCACTGGATAAGAGGAAAAGGTTGGCTTCACCAGCACTTTAGAATTGTTGATCAAGCTGGGAGCTTGACTGTGCATACTTCAACAGGGTCATCTGCTCTTGTTTTCAccaagatccttaaagatcaggTTCATGAAAAccataaacagaaacaaaaccagGAGAATAAGCACCTGCATCCTCAAAATGTGTTTCTTATTGTTGGAGTGTTAATGACCTCTCTTGGATGGTACTCTGTAAATATTGGATCTATACACAAGTTCAATGATGCTGTGATTGTTTCATTTATTAACTCCCACCTTGCTGTCTGTGCATCTTTACTGAGCTCGTTAATAGTGACTTATTTGACAAGGAGGAACTTAAACATGACAGAACTTCTACAAGGGATCATGATCGGTCTCGTAGGTGTAAGTGCATCTTGTGGTTCCATCGAGGTGTGGGCTTCTTTGATCATTGGACTTGTCGTAGGTCTTATATCATCTCTTGTCTCATGGTTAATTCAGAAATACCAACCTTTACGGACCAGCACAGGGGCGCATGACATCACATATACCCATGGCGTTCCTGGTATTCTTGGAGCAGTGGCAGCTGGTCTGTTCAGCAAGTCGTCTCAGGATGTGACAAGTGCCGATGGCGCTTTCTATTCCAACGGTGCTCAGTTAGGTGTCCAGTTACTGGGCGTGCTTGTAACAGTCACGTGGTTGGCTTTAATTCAATTACTACAAACGAAGCCTTTTGGCTCTATGAGGACCCAGAATAAATCAACATCATTTGCTCTGAGCAAAGAAAAGGAGTCTCTTCACAAAAAGCTTTTCAAGGCCGTGGCTGCCGGTGATTTACAAGAACTAGACGCCTTGCTCGCGAATCAAGTGTCTTTTGGAGTGCAGAACTTTGACAAACGAACGCCACTTCACGTGGCCTCCATGCATGGTCATCTCCATTGCGTTAAGTTCCTTCTGCGACAGCCTGGTGTAGACATTCACGCGAGAGACCGCTGGAGAGCATCACCGCTTTCTGAAGCTGTCCAGTCTGGTCATGACCAAGTGGTGCAGTGTCTGTTACGACACGGGGCTGGCTGGTGTGAAGATGGAGTGGGTGATGTGCTGTGTAGCGCTGTGGTGAAAAATGACTCGGAGGAGcttcatcgtcttgtatcactgGGTGTGGATGTTAATGCACCAAACTTTGACGGTAGCACGGCGCTTCATGTTGCAGCCACTGCAGGCAGTCGAGGAGTAGTGCAGTACCTCACTGATCACAGAGCAGATATCAATGCTGTTGACTCGTTAGGAAATACACCTTTGAATTACTCGGACATGCATGAGCATCGTGCGGTCAGCCAGTTATTGGAGGGTCTGGGCGCCAGAAGGTTATCGCATCATTACAGCATGCACGAAATCTGTGAAGTGGCCAGCACAGGAAATCTACAGATGCTGCGACACATGGTGCATAATGGCGCCACAGTCTGCTACAGAGATTTTAACAAACGGACGCCATTACACGTCAGTGCAGCTGAAGGCCATTTGGACGTGGTTAAGTTTCTTCTGTTGCAGCCTGGGACCAACATCAACTCTAGAGACAAAAACGACTTCACTCCACTTCTCGctCTCCTTACACAAGACGAAGGACATGAGAGTCGTGAAAACCTGACAGCTGCATCCCACTCAACACTGTTTGTTGATATTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF13857 all species →	Ank_5	Ankyrin repeats (many copies)	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00909 all species →	Ammonium_transp	Ammonium Transporter Family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR001905 all species →	Family	Ammonium transporter	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002229 all species →	Family	Blood group Rhesus C/E/D polypeptide	Interproscan
IPR029020 all species →	Homologous_superfamily	Ammonium/urea transporter	Interproscan
IPR024041 all species →	Domain	Ammonium transporter AmtB-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43029 all species →	AMMONIUM TRANSPORTER MEP2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008519 all species →	Molecular Function	ammonium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0072488 all species →	Biological Process	ammonium transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03320	amt, AMT, MEP; ammonium transporter, Amt family	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.