Gene detail

Detailed information of evm.model.contig_29514.9 in Platygyra sinensis

Genomic Location: contig_29514:27289...45739
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_29514.9

ATGGGTGGAGTTTGGGAGCGGCAGATCTGTACAGTCAGAAGCGTCCTGTTCCCACTTCTTCAGAACAATGGCCTACAGCTGGATGACGAGTCACTTAGAATGCTCATGTGCAAGCTGACAAGTTCTGCAGATAGCGTTGGAGGCGTGTCCAACATTTGGCCGATGAATTCTGGTCACGATGGCGGAAAGAATACCAGCCTGCTTAGCTTACAGCAACGTCAGAAGTGGACAGTGTCCGGGAACGATGTAGGTGTGGACGGCATCGTGATCATTAAAGATGATAACTCTCCCCACAGTCATCGGCAGCTGGCGCGTATTTGTGCAGTCAACCAAAGTGCTGATGGACGAGTTTGCACCATGAAGTTGAATTTTGCAGATGCCTGTCTTGATAAGGAAGGAAGGAGAGTCAACGAAGTGAAGTTCCTGGAGCGCCCAGTTCAGAAGCTTGTCCTGTTGATGTCTAAGATTGACTATGAAAATATCAATTGGAAGTTTAGAGAAGACCTGGATGTCAGTTTACCCGATGAACTTGGTGGACCTGGAATGATTGCCAATTCAGATGGTCTAACTAATGGTGAATCAGCTGATGTTGGGAGCAGTAGCTCAAGTTTGCAGCAGATTCTTCAATCGAATGTTTCCCTGTCAAGTGGTGTGAGCTCTAGCGCTATGCTAAACTCCAGTGCCATGGCTATGACAGTTAGTGTATCAAGCCCTAATAGTCCATCGCTGACTACTTTAACTTCAGCTAAAAGTCCGGCAGTGAACAATTCTTTGTCATCACCTCCTCAAATACCAGTGAGTACGAGCAGGACTCCAACTCCTGCACCACCGCTCACTTCATCTAGTGACCTCCATCTTGTAAGTGTTGGTTTGAGTCCTGCCCCGTCATCGTCTTTGCTGTTGTCAACAATGAGCTCCGCTTTGCAGGGTAAAGCAAGGGATGCAAGACTGCAAGTTGCAGCCCAGTATAGTGGCAGTTCACTTGATATGAACATGCTTGCCAATAACAATGCATTGATGGCATCTGTGAATGGACCGAGCTCTGCGACTCAGTCGATTGCTTTGAATACAATAGAACACGGCAGCGGAGCAACATTTTCTCGAACTAATATGAATGGGAGTAATTCCGGGAGCAATCCGTTTCAAAATTCGCTTCCTCAACTACAACAAGAGCAGTTGGCGAATTATTTCTTTGATCTTCGCGGTATGAACGGAAGCCCAGACCAATCTAGAGTTTCTTTAGGACAAGCAAGCACTGGACTTGCTCAACCTCCGACAGCTGACCCAGAAAAACGGAGATTAATACAACAACAACTAGTACTGTTGCTTCATGCACAGAAATGTCAGCGTCGAGAACAGAATGCCCAGAATGGTGCAGTGAAGCCTTGCAACTTACCTCATTGTGGAACTATGAAGAATGTGCTAAACCACATGACAACATGCACTGCTGGAAAAACATGTCAAGTTGCGCATTGTACTTCATCTCGACAAATTATTTCACATTGGAAAAATTGCCTGCGACAGGATTGTCCAGTCTGTCTTCCTCTAAAGCATGCATCAGATAACAGAAATAGAGTTACAGGTAATTTGCCAGGCCTTGAAAGGGCATATGAAGCTCTTGGGATAACTTTGGCAACAAACGGGGAGCCAAGGCTGCAACCATATCCTGGTTCCAATAGAAACAATCTCTTGAGGGCAGATCCCACTATGTCACTGACAGCAGACAGCAAATCATTTGGTGAGACATCAGCCACAGCAACAAGCACAACTGCAAATGGAAATCGTGTTCCTAAAGAATGGCATCAGCATGTTACACCAGATCTCAGGAATCATCTTGTGCACAAACTGGTCACGGCAATCTTCCCGACCCCAGTACATGATCCTGCAGCCCTCAGAGATCGAAGAATGGGTAACACTGTTTCCTATGCAAGAAAAGTGGAAGGGGACATGTATGAGACAGCAAACAGCAGGGAGGAATATTATCACCTACTAGCTGAGAAAATATACAAGATTCAAAAGGAACTTGAAGAAAAACGACAAAGGAGATTGCATCAACAGTTACGGAGCAACATCGGAGGAACACAGGTCCCTTTTCCTCAAATGAATGGAGAACTAGGCACTTCTCAAATTCCTACTGCTGCAGCAGCCCAAGCACATGCCGCAGCGGTTGCTGCTGCCCAACAGCACAGACAGTTTGATGTTACCCAGCCTGCACCTGTACAGCCTCAAAACACTTCATCACAAGTAGCACCCATGACATCACCTGGTGTACCACAAGAGATCCAAGCCCAGGGCTATAAGGCTGAAGCAGCTTTTAGAGAAGCCATGGAAAAAGGAAGTGTAAAAGTTTACCGTGGTCGCATTATGTTAATTGGCCAGGACCGTGCAGGGAAAACAAGCCTAAAGAAATTTCTTCTTGGCATTCCTTTTGACCCTGAAGAAGAGAGCACCATAGGAATCAAAGTTGACCCAACCAAGTTTGAATTGGAGATTGACCAAGTTAAGAACTGGCGGGTTACAGATCACAAGAAACTTGATTTGTCAGAGTATCGCGAAGATGTAGCAAAGATAACTGCCGAACGCATGAAAGCATCGGAGCAAGGCATCACTCCGCTTGAGATTGAGGTATTTACTTATGACAGTGATTTTATCCTTTAA

Transcript

evm.model.contig_29514.9

ATGGGTGGAGTTTGGGAGCGGCAGATCTGTACAGTCAGAAGCGTCCTGTTCCCACTTCTTCAGAACAATGGCCTACAGCTGGATGACGAGTCACTTAGAATGCTCATGTGCAAGCTGACAAGTTCTGCAGATAGCGTTGGAGGCGTGTCCAACATTTGGCCGATGAATTCTGGTCACGATGGCGGAAAGAATACCAGCCTGCTTAGCTTACAGCAACGTCAGAAGTGGACAGTGTCCGGGAACGATGTAGGTGTGGACGGCATCGTGATCATTAAAGATGATAACTCTCCCCACAGTCATCGGCAGCTGGCGCGTATTTGTGCAGTCAACCAAAGTGCTGATGGACGAGTTTGCACCATGAAGTTGAATTTTGCAGATGCCTGTCTTGATAAGGAAGGAAGGAGAGTCAACGAAGTGAAGTTCCTGGAGCGCCCAGTTCAGAAGCTTGTCCTGTTGATGTCTAAGATTGACTATGAAAATATCAATTGGAAGTTTAGAGAAGACCTGGATGTCAGTTTACCCGATGAACTTGGTGGACCTGGAATGATTGCCAATTCAGATGGTCTAACTAATGGTGAATCAGCTGATGTTGGGAGCAGTAGCTCAAGTTTGCAGCAGATTCTTCAATCGAATGTTTCCCTGTCAAGTGGTGTGAGCTCTAGCGCTATGCTAAACTCCAGTGCCATGGCTATGACAGTTAGTGTATCAAGCCCTAATAGTCCATCGCTGACTACTTTAACTTCAGCTAAAAGTCCGGCAGTGAACAATTCTTTGTCATCACCTCCTCAAATACCAGTGAGTACGAGCAGGACTCCAACTCCTGCACCACCGCTCACTTCATCTAGTGACCTCCATCTTGTAAGTGTTGGTTTGAGTCCTGCCCCGTCATCGTCTTTGCTGTTGTCAACAATGAGCTCCGCTTTGCAGGGTAAAGCAAGGGATGCAAGACTGCAAGTTGCAGCCCAGTATAGTGGCAGTTCACTTGATATGAACATGCTTGCCAATAACAATGCATTGATGGCATCTGTGAATGGACCGAGCTCTGCGACTCAGTCGATTGCTTTGAATACAATAGAACACGGCAGCGGAGCAACATTTTCTCGAACTAATATGAATGGGAGTAATTCCGGGAGCAATCCGTTTCAAAATTCGCTTCCTCAACTACAACAAGAGCAGTTGGCGAATTATTTCTTTGATCTTCGCGGTATGAACGGAAGCCCAGACCAATCTAGAGTTTCTTTAGGACAAGCAAGCACTGGACTTGCTCAACCTCCGACAGCTGACCCAGAAAAACGGAGATTAATACAACAACAACTAGTACTGTTGCTTCATGCACAGAAATGTCAGCGTCGAGAACAGAATGCCCAGAATGGTGCAGTGAAGCCTTGCAACTTACCTCATTGTGGAACTATGAAGAATGTGCTAAACCACATGACAACATGCACTGCTGGAAAAACATGTCAAGttgcGCATTGTACTTCATCTCGACAAATTATTTCACATTGGAAAAATTGCCTGCGACAGGATTGTCCAGTCTGTCTTCCTCTAAAGCATGCATCAGATAACAGAAATAGAGTTACAGGTAATTTGCCAGGCCTTGAAAGGGCATATGAAGCTCTTGGGATAACTTTGGCAACAAACGGGGAGCCAAGGCTGCAACCATATCCTGgTTCCAATAGAAACAATCTCTTGAGGGCAGATCCCACTATGTCACTGACAGCAGACAGCAAATCATTTGGTGAGACATCAGCCACAGCAACAAGCACAACTGCAAATGGAAATCGTGTTCCTAAAGAATGGCATCAGCATGTTACACCAGATCTCAGGAATCATCTTGTGCACAAACTGGTCACGGCAATCTTCCCGACCCCAGTACATGATCCTGCAGCCCTCAGAGATCGAAGAATGGGTAACACTGTTTCCTATGCAAGAAAAGTGGAAGGGGACATGTATGAGACAGCAAACAGCAGGgAGGAATATTATCACCTACTAGCTGAGAAAATATACAAGATTCAAAAGGAACTTGAAGAAAAACGACAAAGGAGATTGCATCAACAGTTACGGAGCAACATCGGAGGAACACAGGTCCCTTTTCCTCAAATGAATGGAGAACTAGGCACTTCTCAAATTCCTACTGCTGCAGCAGCCCAAGCACATGCCGCAGCGGTTGCTGCTGCCCAACAGCACAGACAGTTTGATGTTACCCAGCCTGCACCTGTACAGCCTCAAAACACTTCATCACAAGTAGCACCCATGACATCACCTGGTGTACCACAAGAGATCCAAGCCCAGGGCTATAAGGCTGAAGCAGCTTTTAGAGAAGCCATGGAAAAAGGAAGTGTAAAAGTTTACCGTGGTCGCATTATGTTAATTGGCCAGGACCGTGCAGGGAAAACAAGCCTAAAGAAATTTCTTCTTGGCATTCCTTTTGACCCTGAAGAAGAGAGCACCATAGGAATCAAAGTTGACCCAACCAAGTTTGAATTGGAGATTGACCAAGTTAAGAACTGGCGGGTTACAGATCACAAGAAACTTGATTTGTCAGAGTATCGCGAAGATGTAGCAAAGATAACTGCCGAACGCATGAAAGCATCGGAGCAAGGCATCACTCCGCTTGAGATTGAGGTATTTACTTATGACAGTGATTTTATCCTTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02135 all species →	zf-TAZ	TAZ zinc finger	Family	Interproscan
PF02172 all species →	KIX	KIX domain	Domain	Interproscan
PF18701 all species →	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013178 all species →	Family	Histone acetyltransferase Rtt109/CBP	Interproscan
IPR036529 all species →	Homologous_superfamily	Coactivator CBP, KIX domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000197 all species →	Domain	Zinc finger, TAZ-type	Interproscan
IPR035898 all species →	Homologous_superfamily	TAZ domain superfamily	Interproscan
IPR003101 all species →	Domain	Coactivator CBP, KIX domain	Interproscan
IPR040676 all species →	Domain	Domain of unknown function DUF5641	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13808 all species →	CBP/P300-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000123 all species →	Cellular Component	histone acetyltransferase complex	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016573 all species →	Biological Process	obsolete histone acetylation	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_29514.9.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.