Gene detail

Detailed information of evm.model.contig_31022.1 in Platygyra sinensis

Genomic Location: contig_31022:766...19457
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_31022.1

GCTACAAGCAATAGCCCAAGTTTAAATGACTGCCTGTGTTCAGGTCCAGCCTTAATCCTGACCATTTTCAAGATTTCACTCCGGTTCAGAGAAAGGAAGATTGCTTTAGTTGCAGACATTGAGAAGGCCTTCTTGAACATTGGAGTTCATGAAGAGGATCGTGATGCATTACGATTCTTATGGGTTGACAGCTTAGAGAAGGAGGATCCAGGATTGGTGTTGTACCGGTTTTGCCTTGTTGTGTTTGGTGTGAATTCAAGTCCATTCCTGTTAAATGCCACCCTGCAGCACCACATCAGTCAGTACAGTTCAGATCCAGAGTTTGTGGTGAACTTATTGAATTCATTCTATGTGGATGATTTAGTGTCTGGAGAAGGGGATCTTGAGAAGTGTCTGTCCATGTATCAGAAGTCAAAGAAGTGCTTATCAGAAGGCGGTTTCAACCTACGAAAATGGATCTCCAATTCACTCCAGCTCCTTGACTTGATTCGTGAAGACCGCACTAAGGCCGAGGGGGGCTCTTCTGAACAAAGGTCAGTAGTAGAGGACACTGAGACCTATGCAACAACCACAGTGGGTCATTTGGACGAGCTAGATATGAAGAATGAACACAAGGTTCTGGGACTGAATTGGAACTGTGGTTCAGATGAGTTCATCTTTAAGTTTGAAGCATTATTGAAGCTAGCAGAAGGCCTGGAACCGACCAGAAGAAATCTACTGAAGGTCACTTCTAGTTTCTTTGACCCCCTAGGAATACTAAGCCCAGTATTAGTACAGATTAAGTTGTTGTTTCAAGTTCTGTGCCAAGAGAAGGTTGCCTGGGATGCACCACTCCCAGAGCCAGTCAGACGGAAGTGGATTGCTTGGCTTCAGGATCTGAGAGACGTTCAGCAAATCATAGTGCCACGGTGTCTGTATGATGGTGTTGAGGAGGCAGTTATCTCCTACACCCTTCATGGATTTGGAGATGCCTCAGAAAGGGCCTATTGTGCAGTTGTGTACCTGGTGTTAGAGACAAGCAGTGGTAACTACCCAGTGCTGTTGACGTCCAAAACTAGAGTGGCACCGCTGACAAAACAGTCTATCCCAAGACTGGAACTATTATCCGGAGTGATCCTTGCAAGACTCGTATCTTCGGTGATGGAAGCATTGCAGTCGCAAGTTCAAATCAGTGGAACGTACCTGTGGTTGGATAGCAAAACAGCAGTCTGCTGGATCAAGGGATCAAGGGATCGAGGGAATGGAAGCAGAATTGAAAATCCTGCGGATATGGGATCTCGGGGAGTATTTGTCTCCAAGTTGAGAAACAGTAAATTGTGGTGGAGGGGACCTTCGTGGCTTTCTGAACCTGTTTCCAGTTGGCCAAAATCTGAAGTCTGCCACCAATCTCTGACTGAAGAATGCATCACAGAGGAAAAGAAGAGTCTGGCTGGCAAGGTTGTTAGTGAAACTGTTTTGCTAGTTGCAAACCAACTTGACCTTGATGCCTGTATTCTAATCTCTAACTTCAGTTGCTGCGACAAGCTGTTCCGTGTTAGTGCTTTAGTGCATCGCTTTGTGAGAAATTTGAAGATTAAGGCCAAGATACTGAAGGAAGGAACTGTCTGTCATGAAGAAGTCACTGAAGCAGAAATTGCCCACGCCGAAGTGCTATGGTTAAGAAGTGTCCAGAGGAATTTGAAATCCCTAACAAATTACAGTCATTTAGAACATGAGTTTGGTCTTTACGAAGATGAGAATGGAGTGGTGAGATGCAAGGGGGCTGTTCACCTGGAGTTAGCCACAGATTTGTCAGCGGACGTGTTTATTCACTGTCTACGGAGATTTACAGCTAGAATGGGGCTACCAGAAATCATTGTGTCAGACAACGCAAAGATGTTCAAGGCTGCAGCGAAGGTTCTAAGAAAGAAGAATGCCACACAAAGCACAGTTATGAGAGTGAATAACAAAAAGAAATACGCGCATCAAATGCGCGCAAACGCGTGTTTTCGCACGCGTTTTTTCACACGCGTTTGCGCAAAAATTGTGCGTGCGTTTTGCGTGTGCGTAGGCCGCTTATCTCTGACCTGTACTGTATCCTCAGATGATGTTGAGGAGCCACTAACCCCTTTTCATTTGATCTACGGGAGAGGAATTCTATCTTTACCCGAAGTTACGCCAGTCAGAGAGGCTTCATTGAACCAAGCAGCGTCGTGCAATGATGGCCCCACAAGAAGGAAATATCTGCGGTTGTTGCTAGATCACTTCTGGAAGCGTTGGAGTAAAGAGTACGTTACAGAGTTGCGGAACCTGCATCGTCAGAGACGCAGACCAGAAGGCAGTATTTCTCTCTCAGTTGGAGACATCGTCACTTTGTTCGAAGACAACCTACCCCGTAGTCAGTGGAGACTTGGAAGGGTTGAACAATTGATCCCCAGTACAGATGATAATGTCAGAGCAGAAGTAGTCAAGGTCATCAGTAAGACCAGGAGAGCCATGACAGTAAAGAGGCCAGTTCAAAGGCTGTTCCCCTTGGAAGTACAAGAGGACGTGACTAATGATGAGCAGGCGTCCGAGGAACGGAGGCAGAACGGAGTCAGACGGACTAGACGAGAAGCAGCTTTGGACGCTGACTACAGTGTCCTGGAGGTGGGCTGTGGCTTGGTTGCCACGCTGTTTACTGTTGTACGGAATGTCAAACAAGTTCATGAATGCTTGGAGTCTGGAGAAGACCAGCAGTTTTTTGATGATGTGGAGTACCTTCTAGATGGTCTCAAACAATCCTGTTCAATAGCGACCCGGTGCTTAAGTGCACTGGACTTTGCATCCCATTGCTCTCAGCCCTCATTCAGAGTGAGCCTCAGGGCCCATGGCATTGCACCAAAAATCTTTTCAGCCCTTCAAGATGCACCCTCTGATAAGTGTCTTGCTCTTTGTACATCAGCAATAACCTTGATGCTATCTCAAGACCGACAGAATGCCGATTTAGACAGATCTGTTCTTGAGCTGATGATGAAGCTATTGGCTGTAGATAGCAACAACCAGCAATCAAAGTCTTTAAAGGATTATAATAAATATGTCGCAAAAGTCAGATCATTACTAGAAAAACAAGATGGATCAGATGGTGAACTCCTTGCTGCAGGAGATGAAGACATAAATCCTGCCTCTCTAGTGTGCGAGTCAATGCTGTCTTTGACGTCCCAGAGGACTGGGGAGTGGTTTAAAGAAGAGATTCGAGTATTGCGTGGACTGGATCACATCATGGACATAGCGATTCAGACTATTGACAACCTTCTAACAAGGTATGCTGATGGCAGATTACACAAGGGTGTATCAATAGCTAAGGTGAAAAAGATGACAAGATGCATGAGGCTTCTTGAGAATGTGACAGTCCAGCATTCTGCTAACCAGGAGTATATGATTCATTATGAGAAGGGATCTTTTGTGACTTCTTTGGTCAGGTTGTTGCAACTGTGTCTGAACACACTCAACCATGGTGTTTCTCCAAAGCAACCCAAGAAAAAACCGGACAAGGCATTTGAGCACTGTTTCTTCAGCATTCTTAAAGTTTTCTTGAATCTGACTCACAACTTTGAGGCAGGCAGCTCTTGTATTGGTCAACAGGATGACTTTCTTTCATTGCTTCTGTTGACTGTTCTACAGTTGCCGCAGTTTGTTACAGAGAACAAGAGGTTTGATTTACTCGTCCTGAGCTTGGAACTCTTAATTAACTTAGTGGAGGAGAGTAAACCGAACATTGCCTCTCTGGTTCAGCTGCGTACCTCCCCCTGCCATGAGAGTCAAGACAGTAGTCAAGAACAAGAAGATCAGGGAGGAGAACTCAGTTCAATTGAGGCCCTTGTACAACTGTTCCTTATAAGAGAACAAGCTGCTAGGAACACAGATGAGATGACATCAGGTTTATCAACTGAAGACCTCGCTGCTTTTATTGTCCAAAATCAAGTTCTTATGCTAACTAGTTGGCATTTACATGTGAAAAGCAGAGAGGTCTGTATCAAAAGCAAGGTCACCTCCAGCCTCTTTCTTGCATTCATGGCGAGAGAAAGTAGTCAAGAGTCTTTTAAACCAACAAAGGATGGCATGGGATGGATTTGCGGTGAAGATATTGATGTTACTGTTGATGAAGGAAATGAGAAAGTTGCAGATGTGCAGGAGGAAGATGAAGTTCCCCTGGAGGTGCAACTTGGGAAAGCTTTACAGAAGGCTGGAAAACACATGGAAGATAGTGTTGTAGCTGCCTATGTTGCTCTGCTTCTTGGCTGCATATTACAGGAGAATGAGGCAAACCAGTGCTTTGTTCGTGGCCTTTTACCTGAAGGAGATTTTTCTCTTCTTGTCAATGTTTTAAGGAAATTTCTACGTTTCTTAAAACTCACAAGTGGTACAAGTGGACATGCCATTGAAAAGATAGTTAAAGTGCTGGAAAGTTGCCAGACAAATTGA

Transcript

evm.model.contig_31022.1

GCTACAAGCAATAGCCCAAGTTTAAATGACTGCCTGTGTTCAGGTCCAGCCTTAATCCTGACCATTTTCAAGATTTCACTCCGgttcagagaaaggaagatTGCTTTAGTTGCAGACATTGAGAAGGCCTTCTTGAACATTGGAGTTCATGAAGAGGATCGTGATGCATTACGATTCTTATGGGTTGACAGCTTAGAGAAGGAGGATCCAGGATTGGTGTTGTACCGGTTTTGCCTTGTTGTGTTTGGTGTGAATTCAAGTCCATTCCTGTTAAATGCCACCCTGCAGCACCACATCAGTCAGTACAGTTCAGATCCAGAGTTTGTGGTGAACTTATTGAATTCATTCTATGTGGATGATTTAGTGTCTGGAGAAGGGGATCTTGAGAAGTGTCTGTCCATGTATCAGAAGTCAAAGAAGTGCTTATCAGAAGGCGGTTTCAACCTACGAAAATGGATCTCCAATTCACTCCAGCTCCTTGACTTGATTCGTGAAGACCGCACTAAGGCCGAGGGGGGCTCTTCTGAACAAAGGTCAGTAGTAGAGGACACTGAGACCTATGCAACAACCACAGTGGGTCATTTGGACGAGCTAGATATGAAGAATGAACACAAGGTTCTGGGACTGAATTGGAACTGTGGTTCAGATGAGTTCATCTTTAAGTTTGAAGCATTATTGAAGCTAGCAGAAGGCCTGGAACCGACCAGAAGAAATCTACTGAAGGTCACTTCTAGTTTCTTTGACCCCCTAGGAATACTAAGCCCAGTATTAGTACAGATTAAGTTGTTGTTTCAAGTTCTGTGCCAAGAGAAGGTTGCCTGGGATGCACCACTCCCAGAGCCAGTCAGACGGAAGTGGATTGCTTGGCTTCAGGATCTGAGAGACGTTCAGCAAATCATAGTGCCACGGTGTCTGTATGATGGTGTTGAGGAGGCAGTTATCTCCTACACCCTTCATGGATTTGGAGATGCCTCAGAAAGGGCCTATTGTGCAGTTGTGTACCTGGTGTTAGAGACAAGCAGTGGTAACTACCCAGTGCTGTTGACGTCCAAAACTAGAGTGGCACCGCTGACAAAACAGTCTATCCCAAGACTGGAACTATTATCCGGAGTGATCCTTGCAAGACTCGTATCTTCGGTGATGGAAGCATTGCAGTCGCAAGTTCAAATCAGTGGAACGTACCTGTGGTTGGATAGCAAAACAGCAGTCTGCTGGATCAAGGGATCAAGGGATCGAGGGAATGGAAGCAGAATTGAAAATCCTGCGGATATGGGATCTCGGGGAGTATTTGTCTCCAAGTTGAGAAACAGTAAATTGTGGTGGAGGGGACCTTCGTGGCTTTCTGAACCTGTTTCCAGTTGGCCAAAATCTGAAGTCTGCCACCAATCTCTGACTGAAGAATGCATCACAGAGGAAAAGAAGAGTCTGGCTGGCAAGGTTGTTAGTGAAACTGTTTTGCTAGTTGCAAACCAACTTGACCTTGATGCCTGTATTCTAATCTCTAACTTCAGTTGCTGCGACAAGCTGTTCCGTGTTAGTGCTTTAGTGCATCGCTTTGTGAGAAATTTGAAGATTAAGGCCAAGATACTGAAGGAAGGAACTGTCTGTCATGAAGAAGTCACTGAAGCAGAAATTGCCCACGCCGAAGTGCTATGGTTAAGAAGTgtccagaggaatttgaaatccCTAACAAATTACAGTCATTTAGAACATGAGTTTGGTCTTTACGAAGATGAGAATGGAGTGGTGAGATGCAAGGGGGCTGTTCACCTGGAGTTAGCCACAGATTTGTCAGCGGACGTGTTTATTCACTGTCTACGGAGATTTACAGCTAGAATGGGGCTACCAGAAATCATTGTGTCAGACAACGCAAAGATGTTCAAGGCTGCAGCGAAGGTTCTAAGAAAGAAGAATGCCACACAAAGCACAGTTATGAGAGTgaataacaaaaagaaatacGCGCATCAAATGCGCGCAAACGCGTGTTTTCGCACGCGTTTTTTCACACGCGTTTGCGCAAAAATTGTGCGTGCGTTTTGCGTGTGCGTAGGCCGCTTATCTCTGACCTGTACTGTATCCTCAGATGATGTTGAGGAGCCACTAACCCCTTTTCATTTGATCTACGGGAGAGGAATTCTATCTTTACCCGAAGTTACGCCAGTCAGAGAGGCTTCATTGAACCAAGCAGCGTCGTGCAATGATGGCCCCACAAGAAGGAAATATCTGCGGTTGTTGCTAGATCACTTCTGGAAGCGTTGGAGTAAAGAGTACGTTACAGAGTTGCGGAACCTGCATCGTCAGAGACGCAGACCAGAAGGCAGTATTTCTCTCTCAGTTGGAGACATCGTCACTTTGTTCGAAGACAACCTACCCCGTAGTCAGTGGAGACTTGGAAGGGTTGAACAATTGATCCCCAGTACAGATGATAATGTCAGAGCAGAAGTAGTCAAGGTCATCAGTAAGACCAGGAGAGCCATGACAGTAAAGAGGCCAGTTCAAAGGCTGTTCCCCTTGGAAGTACAAGAGGACGTGACTAATGATGAGCAGGCGTCCGAGGAACGGAGGCAGAACGGAGTCAGACGGACTAGACGAGAAGCAGCTTTGGACGCTGACTACAGTGTCCTGGAGGTGGGCTGTGGCTTGGTTGCCACGCTGTTTACTGTTGTACGGAATGTCAAACAAGTTCATGAATGCTTGGAGTCTGGAGAAGACCAGCAGTTTTTTGATGATGTGGAGTACCTTCTAGATGGTCTCAAACAATCCTGTTCAATAGCGACCCGGTGCTTAAGTGCACTGGACTTTGCATCCCATTGCTCTCAGCCCTCATTCAGAGTGAGCCTCAGGGCCCATGGCATTGCACCAAAAATCTTTTCAGCCCTTCAAGATGCACCCTCTGATAAGTGTCTTGCTCTTTGTACATCAGCAATAACCTTGATGCTATCTCAAGACCGACAGAATGCCGATTTAGACAGATCTGTTCTTGAGCTGATGATGAAGCTATTGGCTGTAGATAGCAACAACCAGCAATCAAAGTCTTTAAAGGATTATAATAAATATGTCGCAAAAGTCAGATCATTACTAGAAAAACAAGATGGATCAGATGGTGAACTCCTTGCTGCAGGAGATGAAGACATAAATCCTGCCTCTCTAGTGTGCGAGTCAATGCTGTCTTTGACGTCCCAGAGGACTGGGGAGTGGTTTAAAGAAGAGATTCGAGTATTGCGTGGACTGGATCACATCATGGACATAGCGATTCAGACtattgacaaccttctaacaaGGTATGCTGATGGCAGATTACACAAGGGTGTATCAATAGCTAAGGTGAAAAAGATGACAAGATGCATGAGGCTTCTTGAGAATGTGACAGTCCAGCATTCTGCTAACCAGGAGTATATGATTCATTATGAGAAGGGATCTTTTGTGACTTCTTTGGTCAGGTTGTTGCAACTGTGTCTGAACACACTCAACCATGGTGTTTCTCCAAAGCAACCCAAGAAAAAACCGGACAAGGCATTTGAGCACTGTTTCTTCAGCATTCTTAAAGTTTTCTTGAATCTGACTCACAACTTTGaGGCAGGCAGCTCTTGTATTGGTCAACAGGATGACTTTCTTTCATTGCTTCTGTTGACTGTTCTACAGTTGCCGCAGTTTGTTACAGAGAACAAGAGGTTTGATTTACTCGTCCTGAGCTTGGAACTCTTAATTAACTTAGTGGAGGAGAGTAAACCGAACATTGCCTCTCTGGTTCAGCTGCGTACCTCCCCCTGCCATGAGAGTCAAGACAGTAGTCAAGAACAAGAAGATCAGGGAGGAGAACTCAGTTCAATTGAGGCCCTTGTACAACTGTTCCTTATAAGAGAACAAGCTGCTAGGAACACAGATGAGATGACATCAGGTTTATCAACTGAAGACCTCGCTGCTTTTATTGTCCAAAATCaagttcttatgctaactagttggcatttacatgtgaaaagcagagaggtctgtatcaaaagcaaggtcacctccagcctcttTCTTGCATTCATGGcgagAGAAAGTAGTCAAGAGTCTTTTAAACCAACAAAGGATGGCATGGGATGGATTTGCGGTGAAGATATTGATGTTACTGTTGATGAAGGAAATGAGAAAGTTGCAGATGTGCAGGAGGAAGATGAAGTTCCCCTGGAGGTGCAACTTGGGAAAGCTTTACAGAAGGCTGGAAAACACATGGAAGATAGTGTTGTAGCTGCCTATGTTGCTCTGCTTCTTGGCTGCATATTACAGGAGAATGAGGCAAACCAGTGCTTTGTTCGTGGCCTTTTACCTGAAGGAGATTTTTCTCTTCTTGTCAATGTTTTAAGGAAATTTCTACGTTTCTTAAAACTCACAAGTGGTACAAGTGGACATGCCATTGAAAAGATAGTTAAAGTGCTGGAAAGTTGCCAGACAAATTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07814 all species →	WAPL	Wings apart-like protein regulation of heterochromatin	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF18701 all species →	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan
PF05380 all species →	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR022771 all species →	Domain	Wings apart-like protein, C-terminal	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR039874 all species →	Family	Wings apart-like protein	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR012502 all species →	Domain	WAPL domain	Interproscan
IPR040676 all species →	Domain	Domain of unknown function DUF5641	Interproscan
IPR008042 all species →	Family	Retrotransposon, Pao	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22100 all species →	WINGS APART-LIKE PROTEIN HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0071922 all species →	Biological Process	obsolete regulation of cohesin loading	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11492	NCAPG2, LUZP5; condensin-2 complex subunit G2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.