Gene detail

Detailed information of evm.model.contig_31157.2 in Platygyra sinensis

Genomic Location: contig_31157:9792...19974
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_31157.2

ATGGCAACAATAGGACAGCTACAGTCTGAGTACCAAAAGCTTCATATCAGGGTTCAAGCAAGTGTTGCCAGCACTTTGATCTTTCTCAATAAACTTCCCATGAAGCTGAACCCTGTTATCAGGCCAATTATGGATTCTATCAAGAAAGAAGAGCAAACTATTATGCAGACACGGTCAGCACAAGCATTGGCCAAGCTTCTGGAGCTGTGTATGCCGAGAGAACCATGCCCAAATGCTAAGATCATAAAAAATCTCTGTACTTTTGCATGTAGTGATCCTGCCGTCACCCCAGCTGTCAATCTTAGTTTGTCAGTAGCTTCTGATGATCTTCCTCCACTATCACCAACATCAGCAGGTCAATCAGAGTCTAACTGCACTTCATTTCCTGCTGGTGGGACAACTACAACATTGGAACGAGGAAACACTGTACAGTGTGATCATTACAATGGAATTCTTAGTCTTGTACAGCAGCAAAAGAATGCTAATATGGCAGCTCAAAAGAAATCAAGTGGCGGGGCAGGTCGAACTAAGGTCTTAGCAGCTGGAGTGGATGGTGTGGCCATACCCTGTACTGATGAGAATGGTGGAGAGGACTCTGAGACAGCCAGGGTTCTAAGTATCCAAAGAAGAGGTTCAGAATTTTCTCTTGTCAAGCTAGCTCAACATTTTGGGAGTTCATTGCCTTCTAAGTTACCTAAACTTTGGGAAGCAATTGTTGGACCATTACAGCAGATAAAGAATGGAAATTCATTTGATGCAGACAAACTTGTTGGCTTGGAGAGTGAAGCTCAAAATCTAGTAAATTGTTTGCAAATACTTGAAGTTTTAACACCTGCTGTACATGTGGAACTGTTGTCAAAGATCTTAGATCTCCTCCCCAATCTTGTGTTGTGCCTACAGCACCCTTATTGTGCAGTGAGACACTTGGCGGCGAGGTGTCTGGGTGTCCTCAGCAATGTGTCCATTATAGAGACCATGAGAGTTGTTGTCGAGGATGTACTCCCTCTGATGGGCACAGCTGATGTGGTCAGGAACCGTCAAGGAGCTATAGAAGCTATCTCTTGTGTTATTGAACGACTGGGCATGGCTGTCGTCCCATATGTCGTACTGCTGGTGGTACCAGTGCTGGGACGAATGAGTGATCAGTGTGAAGATGTTCGACTCATGGCCACCTACTGTTTTGCTACACTGATTAGGCTCATGCCTCTTGAGTCGGCCATATCTGACTCACCTGGGATGTCTAAAGCTCTGACGGAGCAAAAGCAAAAGGAACGTAAATTCCTTGAGCAGCTGTTGGATGGTAAAAAGGTTGAGAATTACACAATTCCAGTCCCTGTTAACGCTGAGCTGAGAAAATACCAACAGGACGGTGTAAACTGGCTGGCGTTTCTCAACAAGTACAAGCTGCATGGTATTCTTTGTGATGATATGGGCCTTGGTAAAACTCTTCAGTCTATATGTATTATTGCAGGTGATCACCACACAAAAGCTACCGTATACAAGGAGACAGGCAACAGTGATTGCAAGCCACTGCCTTCTCTGGTGATCTGCCCTCCAACACTGACTGGACACTGGGTGTATGAGGTGGAGAAGTTCCTCAGTAAAGATTTCCTTAAACCACTACACTATACAGGTCCACCTTCAGAGAGACAAAGGCTTCGGAACAAGGTCAAAAATCATAGTTTAGTGGTAGCATCGTATGATATTGTTAGAAACGACGGTGATTTCTTCAGATACTGTGTCCGCTGGCTAAACTTTGTGTTGCTCTATTTTCAGCTTGCCAAAGTTATTAAGCAGCTCCGGGCAAGCCATCGACTTATCCTGTCAGGAACTCCAATTCAGAACAACGTCCTTGAACTGTGGTCGCTGTTCGATTTCTTGATGCCTGGTTTCTTAGGAACTGAGAAGCAGTTTCAGGCCCGGTTTGGTAAACCCATCCTACAAAGCAGAGATGCGAAATCCTCCTCCAAAGAACAGGAAGCTGGTATGTCTGCATGGAATAGTCTTATGTTTGAGCTTATTCGTTCGGAATGA

Transcript

evm.model.contig_31157.2

ATGGCAACAATAGGACAGCTACAGTCTGAGTACCAAAAGCTTCATATCAGGGTTCAAGCAAGTGTTGCCAGCACTTTGATCTTTCTCAATAAACTTCCCATGAAGCTGAACCCTGTTATCAGGCCAATTATGGATTCTATCAAGAAAGAAGAGCAAACTATTATGCAGACACGGTCAGCACAAGCATTGGCCAAGCTTCTGGAGCTGTGTATGCCGAGAGAACCATGCCCAAATGCTAAGATCATAAAAAATCTCTGTACTTTTGCATGTAGTGATCCTGCCGTCACCCCAGCTGTCAATCTTAGTTTGTCAGTAGCTTCTGATGATCTTCCTCCACTATCACCAACATCAGCAGGTCAATCAGAGTCTAACTGCACTTCATTTCCTGCTGGTGGGACAACTACAACATTGGAACGAGGAAACACTGTACAGTGTGATCATTACAATGGAATTCTTAGTCTTGTACAGCAGCAAAAGAATGCTAATATGGCAGCTCAAAAGAAATCAAGTGGCGGGGCAGGTCGAACTAAGGTCTTAGCAGCTGGAGTGGATGGTGTGGCCATACCCTGTACTGATGAGAATGGTGGAGAGGACTCTGAGACAGCCAGGGTTCTAAGTATCCAAAGAAGAGGTTCAGAATTTTCTCTTGTCAAGCTAGCTCAACATTTTGGGAGTTCATTGCCTTCTAAGTTACCTAAACTTTGGGAAGCAATTGTTGGACCATTACAGCAGATAAAGAATGGAAATTCATTTGATGCAGACAAACTTGTTGGCTTGGAGAGTGAAGCTCAAAATCTAGTAAATTGTTTGCAAATACTTGAAGTTTTAACACCTGCTGTACATGTGGAACTGTTGTCAAAGatCTTAGATCTCCTCCCCAATCTTGTGTTGTGCCTACAGCACCCTTATTGTGCAGTGAGACACTTGGCGGCGAGGTGTCTGGGTGTCCTCAGCAATGTGTCCATTATAGAGACCATGAGAGTTGTTGTCGAGGATGTACTCCCTCTGATGGGCACAGCTGATGTGGTCAGGAACCGTCAAGGAGCTATAGAAGCTATCTCttGTGTTATTGAACGACTGGGCATGGCTGTCGTCCCATATGTCGTACTGCTGGTGGTACCAGTGCTGGGACGAATGAGTGATCAGTGTGAAGATGTTCGACTCATGGCCACCTACTGTTTTGCTACACTGATTAGGCTCATGCCTCTTGAGtcgGCCATATCTGACTCACCTGGGATGTCTAAAGCTCTGACGGAGCAAAAGCAAAAGGAACGTAAATTCCTTGAGCAGCTGTTGGATGGTAAAAAGGTTGAGAATTACACAATTCCAGTCCCTGTTAACGCTGAGCTGAGAAAATACCAACAGGACGGTGTAAACTGGCTGGCGTTTCTCAACAAGTACAAGCTGCATGGTATTCTTTGTGATGATATGGGCCTTGGTAAAACTCTTCAGTCTATATGTATTATTGCAGGTGATCACCACACAAAAGCTACCGTATACAAGGAGACAGGCAACAGTGATTGCAAGCCACTGCCTTCTCTGGTGATCTGCCCTCCAACACTGACTGGACACTGGGTGTATGAGGTGGAGAAGTTCCTCAGTAAAGATTTCCTTAAACCACTACACTATACAGGTCCACCTTCAGAGAGACAAAGGCTTCGGAACAAGGTCAAAAATCATAGTTTAGTGGTAGCATCGTATGATATTGTTAGAAACGACGGTGATTTCTTCAGATACTGTGTCCGCTGGCTAAACTTTGTGTTGCTCTATTTTCAGCTTGCCAAAGTTATTAAGCAGCTCCGGGCAAGCCATCGACTTATCCTGTCAGGAACTCCAATTCAGaacAACGTCCTTGAACTGTGGTCGCTGTTCGATTTCTTGATGCCTGGTTTCTTAGGAACTGAGAAGCAGTTTCAGGCCCGGTTTGGTAAACCCATCCTACAAAGCAGAGATGCGAAATCCTCCTCCAAAGAACAGGAAGCTGGTATGTCTGCATGGAATAGTCTTATGTTTGAGCTTATTCGTTCGGAATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF12054 all species →	DUF3535	Domain of unknown function (DUF3535)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR044078 all species →	Domain	Mot1, ATP-binding domain	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR022707 all species →	Domain	Mot1, central domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR044972 all species →	Family	TATA-binding protein-associated factor Mot1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36498 all species →	TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0017025 all species →	Molecular Function	TBP-class protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_31157.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.