Gene detail

Detailed information of evm.model.contig_32877.3 in Platygyra sinensis

Genomic Location: contig_32877:17357...46068
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_32877.3

ATGGAGACTTTGCAGGTCTCTGATATATTCCGTAGTTGTCAGTTTGTGGTCGATTTTGCTGCTTCCTCGCTGCTGTCATTCAAGAGGAAGAAAGAAATCCGACGAGATATTGTTGGCAATGGAGGCATATTGTCATACATTTTGACCAAACAGACAAGCTTCCTGGTCACTGGTAATGCTGAAAAGACTTTGTCCTCCTATAACGGAAGAACTGCTGTTGAGAATGGAATTCCTGTGGTCTCGTTCGATTTCATTGCTGAGTGCATCAAGTCTTGCAAGCTTCTTGATCCACAAACTTTTCTTTTGGCTGAAACACTTGAGTCACAGAGCTTTGGTTCTGGAAAAATAGTTGATAAGAGGCAAAGTTGTAAAAAGGCAACCAAAGTAATAAAGAAACTGCAGCTGCCTAATCTCAATAAAACAAGGGTTTGGCTTTACAAGGCCTCAGATGGTCCAGAATTTGATGAACAAAGATGTGAAATTAGTAAAGACGTTCTTTTACATGGTTTCGATTCTACTGTCAATACAATCTTGTTTTATGCACTGGAGTTACATGTTATTCCTCCAAATGTTCCCTGTACTGGCTCAAGATATCGGGTATTTACACATCATGGGGACCTTGGTGGACTCTCGCATAGTAATGAAGGAACCAAGGAATGCAGATACTTCGAAACTGCCACAGAGGCACTAGGAGCTTATGTCGCTCTGTATGATCGGCAGACCCAGCCACCATATGGCATGACAAGGGCAGAGACTACTCTGTCACATAAGATTGGTTCTGATAAGATGAAGCAGGATGTAGAGAAAGCTGAAGCAATATTGCTTTTACTGAGGAAATCATTAGATGCTAAAGAAGGTGCCAGTGCAATTCAGGAACTCTCTGACGAATTCTTTTCAGTCATTCCTCACAAAAACAAAGGAACAGTAATAACTTCGAGGAAACTTATTGCGCAAAAACAAGACTTGTGTCAGCTCATGAAGGACATGGTTAGTGTTGGTGAGTCTACAAACTGGCTAACAAGGAAGAGTGTGTATGCCAAGTACAGGGCACTCAAGTCTCACATTGAATGTTTGGCACATGACAGCAATGAGTTTGAAAAGATCCAAGAACTTGTGAATGCAAGTGAAACAGGTGATTCTAAGATCAGTGTACTCAATGTTTTCTCCATCCATCGGCCAGTGGAGGGAAGTGCTTTTTCCCATGATATTGGTAATAAAAGACTCCTTTTCCACTCGTCAAAGGTGACAAACTTTGTGGGTATACTTTCAAGAGGACTTCTCATGCCTAAAATTGTTGTTGACGATTTTGGTGGCCAACGATCTGATGCAGGAATGCTAGGAAGTGGAATATACTTTGCAAGTTCTGCAAGCACAAGTGCCAAATATTCTGCTCCTGGAAGCAAGGGAACAAGGCTGATGCTTGTAAATGAGGTTGCGTTAGGGAAAGTCAAGGAGTTCAGGAAGTTTTCCTTGGATTTGACATCACCTCCACCTGGTTATAACAGTTGTCATGGATTGATGAGCACAGACGATGAGCCCTCGGATTTCAAGGAGGATGAATTTGCCGTCTACAACGGTACCCAACAGAAAATAAGATATCTGGTTGAGTTTGTTTTAACTGGCGACAGAGTTCTTCCTAGAGATGACATTTCTCTTGATAGTGGTTTCTCGGATGATGAAAGGGAAGTTGTTTCAGAAGGTGCCATGTATTCTTTCCCAGGCACCAGTGTGGACCTAACAGATGTGATGTCAGTCGTGGACCCTTTGAAAAAAGTCGAGGCAGGACTTAAGGGGACTGGAGACAAGGCTATCCCGCTGCAGTCAGTCCACATCAAGGCTAGGTTGTTAGATCTTGCCGCTCAGGTGATAGTTTTCCAAGAGTACAAAAACAACAGTACTACACCCATAGAAGCCAAGTACGTTTTTCCTTTGGACGATATGGCTGCAGTTTGTGGTTTTGAAGCATTCATCAATGGTAAACATATCGTGGGTGAAGTGAAAGAGAAAGAACAGGCCCACAAAGAGTATCGGGAAGCCATCAGCCAGGGGCATGGGGCTTACCTCATGGACGAAGAAACTCCGGATGTGTTCACTGTCAGCGTAGGAAACCTCCCTCCCGGTGCACTGGTGTTAATCAAGATAACATACGTCACTGAGCTCACGGTGGACAGAGAACACATTTGCTTCTCTCTCCCAGGCTCCGTGGCACCGTGGACACGTGACAAGGCCTTGGAGGAAGTTACTCAGACTGATGTCGAGACAGTAAAGATACAGGACGAAAGCCAGAGCGATCTGCATGAACTATTCGTGAAAATGTCTGTGGAGATGCCGTTTGAGATTCGTACACTCGAGTCTCCTACTCATGTTATCACAACCAAGCGGACAGCCACCAAAGCAGTGGTGCTAATGGAGCGAGGTCAAACTCTAGGTGATGGTTTCCAACTTCTGATTGGTCTAGCTGAGATTCACGTACCCCGGATGTGGGTTGAGCGCCACATCAGCAAGCCAGACAGTCAGGCATGTATGCTGACATTCTACCCTGAATTCGAAGCAGAGAGTCCCCCAGAAGTCGAGGTCGTATTTTTGCTTGATTTGTCCTGTTCAATGAAGGGTACTCCCATAGAAGAAGCCAAGAAAATTTTGTTGATGTGCCTCAGCCACATGAAGAAAGACTGGACATTTAACATACTTGTATTCGGAAGCATACATGAACGACATCGTCATGATATGGACACATTCTGTGGACGACCTTCATGTCTTACCCCCAAAGACACTTCCACTACTAATCAGCCGCAACGGGTAACCCTCATTTAA

Transcript

evm.model.contig_32877.3

ATGGAGACTTTGCAGGTCTCTGATATATTCCGTAGTTGTCAGTTTGTGGTCGATTTTGCTGCTTCCTCGCTGCTGTCATTCAAGAGGAAGAAAGAAATCCGACGAGATATTGTTGGCAATGGAGGCATATTGTCATACATTTTGACCAAACAGACAAGCTTCCTGGTCACTGGTAATGCTGAAAAGACTTTGTCCTCCTATAACGGAAGAACTGCTGTTGAGAATGGAATTCCTGTGGTCTCGTTCGATTTCATTGCTGAGTGCATCAAGTCTTGCAAGCTTCTTGATCCACAAACTTTTCTTTTGGCTGAAACACTTGAGTCACAGAGCTTTGGTTCTGGAAAAATAGTTGATAAGAGGCAAAGTTGTAAAAAGGCAACCAAAGTAATAAAGAAACTGCAGCTGCCTAATCTCAATAAAACAAGGGTTTGGCTTTACAAGGCCTCAGATGGTCCAGAATTTGATGAACAAAGATGTGAAATTAGTAAAGACgttcttttacatGGTTTCGATTCTACTGTCAATACAATCTTGTTTTATGCACTGGAGTTACATGTTATTCCTCCAAATGTTCCCTGTACTGGCTCAAGATATCGGGTATTTACACATCATGGGGACCTTGGTGGACTCTCGCATAGTAATGAAGGAACCAAGGAATGCAGATACTTCGAAACTGCCACAGAGGCACTAGGAGCTTATGTCGCTCTGTATGATCGGCAGACCCAGCCACCATATGGCATGACAAGGGCAGAGACTACTCTGTCACATAAGATTGGTTCTGATAAGATGAAGCAGGATGTAGAGAAAGCTGAAGCAATATTGCTTTTACTGAGGAAATCATTAGATGCTAAAGAAGGTGCCAGTGCAATTCAGGAACTCTCTGACGAATTCTTTTCAGTCATTCCTCACAAAAACAAAGGAACAGTAATAACTTCGAGGAAACTTATTGCGCAAAAACAAGACTTGTGTCAGCTCATGAAGGACATGGTTAGTGTTGGTGAGTCTACAAACTGGCTAACAAGGAAGAGTGTGTATGCCAAGTACAGGGCACTCAAGTCTCACATTGAATGTTTGGCACATGACAGCAATGAGTTTGAAAAGATCCAAGAACTTGTGAATGCAAGTGAAACAGGTGATTCTAAGATCAGTGTACTCAATGTTTTCTCCATCCATCGGCCAGTGGAGGGAAGTGCTTTTTCCCATGATATTGGTAATAAAAGACTCCTTTTCCACTCGTCAAAGGTGACAAACTTTGTGGGTATACTTTCAAGAGGACTTCTCATGCCTAAAATTGTTGTTGACGATTTTGGTGGCCAACGATCTGATGCAGGAATGCTAGGAAGTGGAATATACTTTGCAAGTTCTGCAAGCACAAGTGCCAAATATTCTGCTCCTGGAAGCAAGGGAACAAGGCTGATGCTTGTAAATGAGGTTGCGTTAGGGAAAGTCAAGgagtTCAGGAAGTTTTCCTTGGATTTGACATCACCTCCACCTGGTTATAACAGTTGTCATGGATTGATGAGCACAGACGATGAGCCCTCGGATTTCAAGGAGGATGAATTTGCCGTCTACAACGGTACCCAACAGAAAATAAGATATCTGGTTGAGTTTGTTTTAACTGGCGACAGAGTTCTTCCTAGAGATGACATTTCTCTTGATAGTGGTTTCTCGGATGATGAAAGGGAAGTTGTTTCAGAAGGTGCCATGTATTCTTTCCCAGGCACCAGTGTGGACCTAACAGATGTGATGTCAGTCGTGGACCCTTTGAAAAAAGTCGAGGCAGGACTTAAGGGGACTGGAGACAAGGCTATCCCGCTGCAGTCAGTCCACATCAAGGCTAGGTTGTTAGATCTTGCCGCTCAGGTGATAGTTTTCCAAGAGTACAAAAACAACAGTACTACACCCATAGAAGCCAAGTACGTTTTTCCTTTGGACGATATGGCTGCAGTTTGTGGTTTTGAAGCATTCATCAATGGTAAACATATCGTGGGTGAAGTGAAAGAGAAAGAACAGGCCCACAAAGAGTATCGGGAAGCCATCAGCCAGGGGCATGGGGCTTACCTCATGGACGAAGAAACTCCGGATGTGTTCACTGTCAGCGTAGGAAACCTCCCTCCCGGTGCACTGGTGTTAATCAAGATAACATACGTCACTGAGCTCACGGTGGACAGAGAACACATTTGCttctctctcccaggctccgTGGCACCGTGGACACGTGACAAGGCCTTGGAGGAAGTTACTCAGactgaTGTCGAGACAGTAAAGATACAGGACGAAAGCCAGAGCGATCTGCATGAACTATTCGTGAAAATGTCTGTGGAGATGCCGTTTGAGATTCGTACACTCGAGTCTCCTACTCATGTTATCACAACCAAGCGGACAGCCACCAAAGCAGTGGTGCTAATGGAGCGAGGTCAAACTCTAGGTGATGGTTTCCAACTTCTGATTGGTCTAGCTGAGATTCACGTACCCCGGATGTGGGTTGAGCGCCACATCAGCAAGCCAGACAGTCAGGCATGTATGCTGACATTCTACCCTGAATTCGAAGCAGAGAGTCCCCCAGAAGTCGAGGTCGTATTTTTGCTTGATTTGTCCTGTTCAATGAAGGGTACTCCCATAGAAGAAGCCAAGAAAATTTTGTTGATGTGCCTCAGCCACATGAAGAAAGACTGGACATTTAACATACTTGTATTCGGAAGCATACATGAACGACATCGTCATGATATGGACACATTCTGTGGACGACCTTCATGTCTTACCCCCAAAGACACTTCCACTACTAATCAGCCGCAACGGGTAACCCTCATTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02877 all species →	PARP_reg	Poly(ADP-ribose) polymerase, regulatory domain	Domain	Interproscan
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF08487 all species →	VIT	Vault protein inter-alpha-trypsin domain	Family	Interproscan
PF00644 all species →	PARP	Poly(ADP-ribose) polymerase catalytic domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013694 all species →	Domain	VIT domain	Interproscan
IPR012317 all species →	Domain	Poly(ADP-ribose) polymerase, catalytic domain	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR036616 all species →	Homologous_superfamily	Poly(ADP-ribose) polymerase, regulatory domain superfamily	Interproscan
IPR004102 all species →	Domain	Poly(ADP-ribose) polymerase, regulatory domain	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR031273 all species →	Family	Protein mono-ADP-ribosyltransferase PARP4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46530 all species →	PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003950 all species →	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0140289 all species →	Biological Process	obsolete protein mono-ADP-ribosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_32877.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.