Gene detail

Detailed information of evm.model.contig_33540.8 in Platygyra sinensis

Genomic Location: contig_33540:75994...84739
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04427 all species →	Brix	Brix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026532 all species →	Family	Ribosome biogenesis protein BRX1	Interproscan
IPR007109 all species →	Domain	Brix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13634 all species →	RIBOSOME BIOGENESIS PROTEIN BRIX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14820	BRX1, BRIX1; ribosome biogenesis protein BRX1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.