Gene detail

Detailed information of evm.model.contig_33806.1 in Platygyra sinensis

Genomic Location: contig_33806:100...18724
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_33806.1

ATGAAGGATGGAGACATGGTTACCAGAGCCGAAGAAACCACAGAACTTGGCACTGAAGAAGACCCCGTGGAAGAAGTCACCAAAGAATCCAACATGGTGACCGCACTGTTGGGAACTGACTCCAAGAGGAATGGAATCTGTACATATGCCATGCTACAATACACGAGCATGTGGAATTCCAACACATGCGCACTTGTGTTGACAACTTTGACTACTACAGAAACGCAAGCGCTCTTTGTGGTTAACTCTGTAAAACTGCATTTAACTGCATTTAAATTGTCAATAAGTAATATTCTAATGGAGGTTTTCAAGAGTGATGATCCCCTGGATGGCAAAGATTTTAACCCAGTGGACTATATTAATTCACTCTTTCCCACTGAACAGTCTCTAGCAAATATAGATGATGTTGTTAACAAGATGAGACTAAGAATCAGGGGTCTTGATGAAGAAATAAGGACTGTTGTTAGAGGACAGACTAACATTGGTCATGAAGGAAGACAAGCTCTTGATGAAGCCAAGCAATCAATTCAACAGCTGTTTGCAAAAATCATTGACATTAAAGAAAAGGCAGACAAATCAGAACAAATGGTAAAGGAAATAACAAGAGATATCAAGCAACTAGACCATGCTAAGCGACATTTAACAAGTTCCATCACGACTCTAAATCACCTCCATATGCTGGTAGGTGGAGTGGACACCCTCATGAATTTAACGAGAAAGCGGCATTATGGAGAGGTGGCTAATCTGTTACAAGGGGTTGTCAATGTGCTGGAACACTTCAAAAAGTACTTTGGAATTACTCAAATTCGACAGTTAGCTGACAACAATAGCAGTAGCAGTAGCAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTAGCAGTAGCAGTAGCAGTAGCAGTAGCAGTAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTAGCAGTAGCAGTAGCAGTAGCAGTAGCAGTAGCAGCAGTAGCAGTAGCAGTAGCAGTAACAGTAGCAGTAGCAGTAGCAAAAGCAATATTGTCTGTGACAGCAACTACTCATATGTGCTCATGTTTTTTTTTACTATCAGGGTTAAACAAATCCAGAATGAACTGGGCACTCAAATATTGGCAGATTTTGAAGAAGCCCTGTCTGTCAAAGGAGTGAAGCCTCCTGCAGGACCAAACTCACAGTTAGCTGAAGCATGTCAAGTGGTGAATGTCCTGGATCCAAAAGTCAAAAATGAACTGATGACATGGTTTGTCAAGCTCCAGTTAGCAGAATATCAGCAACTGTTTAATGAATCATTTGAAGTTGCATGGCTTGATAAAATTGACCGCCGTTACTCCTGGTTAAAAAGAGCTCTGGTCAAATTTGATGAAGACTTTCAAGGAACGTTTCCTTCAGAATGGCATGTGGAGGAAAGAATCAGTGAAGAATTCTGTAGAATAACCAAGAAAGATTTATCAAAAATCATGACAGCGAGAGTACAAGAAATTGATGTCAAACTACTGTTATTTGCCATTCAAAGAACAACAACCTTTGAAAGTTTATTGGCACAGAGGTTTGTTCATCATGGTTACGAGGACATTGAAGAACCAAAGGAGGTTGCAGGCAAGCCAAAACAGTCAAAGTTCTTGGGGATCATTTCAAGATGTTTTGAGCCACATCTTCATATCTATATAGAATCGCAAGACAAAAATCTGTCAGAACTGATGGACAGGTTTGTCCAAGATTTCAAGTCCCTTGGGATTCCCATGGTGGAAGGAGATGGCAGCAATGTAGTGTTTCCAAGTGCTGGTGAACTGTTTGTATTCTATAAAAAATGCATGGTGCAGTGTTCACAGCTCAGCACAGGGCCTCCTCTGCTTTCACTCACTGCAGCATTCCAGAAGTTTCTTAGAGAGTATGCCACAAGAGTACTGAACAATCATCTCCCTGTAAAAACCACAGGTGGTCTTGCAAGCATCTTGAAGGATTCAAGTGAAGTGAAATTCAGCAAAGAAGAACAAAGTCTGACGTGTTGTATTCTCTGTACAGCTGATTACTGTCTGGAAACCACTCAACAGTTGGAGGAGAAATTGAAAGAGAAAGTTGACCCAGAATTGGCAGAGAAAATCGATCTCAATGGTGAACAAGATGTATTCCACAGACCTGATCTCGAAATCAACGTACTTGTCGTGAACAATAGCATGACTCGAGAGATATTCTCGTTATTGGATTACTGGTTATTGGATTTGAGAAGAATCCTAGCTGTATTTCAGAGTTTGATAAGAAACTAG

Transcript

evm.model.contig_33806.1

ATGAAGGATGGAGACATGGTTACCAGAGCCGAAGAAACCACAGAACTTGGCACTGAAGAAGACCCCGTGGAAGAAGTCACCAAAGAATCCAACATGGTGACCGCACTGTTGGGAACTGACTCCAAgaggaatggaatctgtacatATGCCATGCTACAATACACGAGCATGTGGAATTCCAACACATGCGCACTTGTGTTGACAACTTTGACTACTACAGAAACGCAAGCGCTCTTTGTGGTTAACTCTGTAAAActgcatttaactgcatttaaaTTGTCAATAAGTAATATTCTAATGGAGGTTTTCAAGAGTGATGATCCCCTGGATGGCAAAGATTTTAACCCAGTGGACTATATTAATTCACTCTTTCCCACTGAACAGTCTCTAGCAAATATAGATGATGTTGTTAACAAGATGAGACTAAGAATCAGGGGTCTTGATGAAGAAATAAGGACTGTTGTTAGAGGACAGACTAACATTGGTCATGAAGGAAGACAAGCTCTTGATGAAGCCAAGCAATCAATTCAACAGCTGTTTGCAAAAATCATTGACATTAAAGAAAAGGCAGACAAATCAGAACAAATGGTAAAGGAAATAACAAGAGATATCAAGCAACTAGACCATGCTAAGCGACATTTAACAAGTTCCATCACGACTCTAAATCACCTCCATATGCTGGTAGGTGGAGTGGACACCCTCATGAATTTAACGAGAAAGCGGCATTATGGAGAGGTGGCTAATCTGTTACAAGGGGTTGTCAATGTGCTGGAACACTTCAAAAAGTACTTTGGAATTACTCAAATTCGACAGTTAGCTGACAAcaatagcagtagcagtagcagcagcagtagcagcagcagcagcagcagcagtagcagtagcagtagcagtagcagtagcagtagcagtagcagcagcagcagcagcagcagtagcagtagcagtagcagtagcagtagcagtagcagtagcagcagtagcagtagcagtagcagtaacagtagcagtagcagtagcaaaAGCAATATTGTCTGTGACAGCAACTACTCATATGtgctcatgtttttttttactatcaGGGTTAAACAAATCCAGAATGAACTGGGCACTCAAATATTGGCAGATTTTGAAGAAGCCCTGTCTGTCAAAGGAGTGAAGCCTCCTGCAGGACCAAACTCACAGTTAGCTGAAGCATGTCAAGTGGTGAATGTCCTGGATCCAAAAGTCAAAAATGAActgatgacatggtttgtcaAGCTCCAGTTAGCAGAATATCAGCAACTGTTTAATGAATCATTTGAAGTTGCATGGCTTGATAAAATTGACCGCCGTTACTCCTGGTTAAAAAGAGCTCTGGTCAAATTTGATGAAGACTTTCAAGGAACGTTTCCTTCAGAATGGCATGTGGAGGAAAGAATCAGTGAAGAATTCTGTAGAATAACCAAGAAAGATTTATCAAAAATCATGACAGCGAGAGTACAAGAAATTGATGTCAAACTACTGTTATTTGCCATTCAAAGAACAACAACCTTTGAAAGTTTATTGGCACAGAGGTTTGTTCATCATGGTTACGAGgACATTGAAGAACCAAAGGAGGTTGCAGGCAAGCCAAAACAGTCAAAGTTCTTGGGGATCATTTCAAGATGTTTTGAGCCACATCTTCATATCTATATAGAATCGCAAGACAAAAATCTGTCAGAACTGATGGACAGGTTTGTCCAAGATTTCAAGTCCCTTGGGATTCCCATGGTGGAAGGAGATGGCAGCAATGTAGTGTTTCCAAGTGCTGGTGAACTGTTTGTATTCTATAAAAAATGCATGGTGCAGTGTTCACAGCTCAGCACAGGGCCTCCTCTGCTTTCACTCACTGCAGCATTCCAGAAGTTTCTTAGAGAGTATGCCACAAGAGTACTGAACAATCATCTCCCTGTAAAAACCACAGGTGGTCTTGCAAGCATCTTGAAGGATTCAAGTGAAGTGAAATTCAGCAAAGAAGAACAAAGTCTGACGTGTTGTATTCTCTGTACAGCTGATTACTGTCTGGAAACCACTCAACAGTTGGAGGAGAAATTGAAAGAGAAAGTTGACCCAGAATTGGCAGAGAAAATCGATCTCAATGGTGAACAAGATGTATTCCACAGaCCTGATCTCGAAATCAACGTACTTGTCGTGAACAATAGCATGACTCGAGAGATATTCTCGTTATTGGATTACTGGTTATTGGATTTGAGAAGAATCCTAGCTGTATTTCAGAGTTTGATAAGAAACTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10351 all species →	FMP27-BLTP2_C	BLTP2/FMP27/Hobbit, C-terminal	Repeat	Interproscan
PF04100 all species →	Vps53_N	Vps53, N-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019443 all species →	Domain	BLTP2/FMP27/Hobbit, C-terminal	Interproscan
IPR007234 all species →	Domain	Vps53, N-terminal	Interproscan
IPR039766 all species →	Family	Vacuolar protein sorting-associated protein 53	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12820 all species →	VACUOLAR SORTING PROTEIN 53	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000938 all species →	Cellular Component	GARP complex	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_33806.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.