Gene detail

Detailed information of evm.model.contig_34571.2 in Platygyra sinensis

Genomic Location: contig_34571:7143...17640
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_34571.2

ATGTCTTTGATCTTTTCGCTATTCCAGAATGAATTTCGTGAGTACCCCTCCCTGTTGCGTCATGCGGTGTCTCTAGGCCGTAGGATCCAGGATCCGCTGGCCGAGTTCGCTGCGCTGTGTGTTGAGGAAGATGAACTTCTGTGTTTAAGACTGCATCCGTTCCAGGACCACGTATCCAAAGAGCATCTTGTCAAAAGTCTTCATCAGGAATTCGTGACCGTAGTAAATGACGTAGGGGTTGACCCCAACCGGCTTTTGGAGCATCCCCATACTGTCGCACTGCTGCAGTTCGTGTGTGGACTGGGACCCAGAAAAGCGTCATCTTTATTGAAGAGTCTACGACAGCAGTGTACCAGACTGGAGAACCGCTCCCAGCTCGTGACCGTTTGTGGCCTGGGTCCTCAGGTGTTTTTAAACTGCGCAGGCTTCATTAAGATTGACACAGCAGCCATTAGTGACACGACAACGAACTACATCGAGGTTCTCGACGGTTCACGTGTTCATCCGGAGACCTACGAGTGGGCGAAGAAAATGGCCGTGGATGCGCTCGACTACGATGAGGCGACTATGGAATCGAACCCGTCGTCCGCTTTGGAAGAAATTCTGGAGGCTCCCGACAGGTTAAAAGACCTGGATCTAGACGCGTTTGCCGAAGAACTGGAACGTCAAGACTACGGGAATAAGCGGATTACGTTATACGACATCCGAGACGAGCTGTTTGGCCAATACAGGGAACGCCGCACTCCGTTCCGTGCTCTGACGGTAGAGGAACTCTTCAGACTGCTGACGGGTGAGACCAGCGAGTCTCTTTATGTGGGCAGGATGGTGATATGTACTGTGACTGGGTTTGCTAACAGAAAACCTCCTCGTGATATGATCGATCAGGCGCAACCTGTGAGAAATGACGAGACAGGCCAGTGGCAGTGTCCGTTCTGTTTACAGGATACCTTCCCTGATCTGAGCGAGGTGTGGACACATCTTGATAACGGAAGCTGTGCTGGTCAGGCGGTGGGTGTTCGTACCAGACTGGAAAACGGCCTGTCTGGGTTCATTCCGACAAAGATGATCAGCGACAAGCATATCAGCAGTCCTCACGAGAGAGTCAAGGTGGGAATGACCCTTCACTGTCGCGTGACACGAGTGAACATGGAGCGGTTTCAGTTGGATCTGACGTGTCGTTCATCGGATCTCGCTGATAAAGAAGGAAAGTTCAGTCTTCCCAAAGATTTGTATTTCGATGAAGATGCGGCGGACAGTGACAAGAAAGATGAGGAAGCGGCGAAGAAGAAAGCTAACAGACCAAAATACGTGAAGCGTGTGATAGTGCATCCTGCCTTCAAGAACATCTCATTCAAGGACGCTGAGAGGCTCTTAGCTGAAATGGACCAGGGAGAATGTATTGTCCGACCCAGCAGTAAGGGCGCAGATCACCTGACTGTCACGTGGAAGGTTGATGAAGGAGTTTACCAACACGTGGACGTGCGTGAAGAAGGAAAAGAAAACGCCTTCAGCCTTGGACGATCACTTTGGATTGACAGCGAGGAATTTGAAGATCTCGATGAAATCATTGCTCGGCACGTTCAACCCATGGCGTCATTTGCTCGGGAAATTCTTAACCACAAGAACTACAGAGCAGTGGACGGAGTCAAATCCAAGCTTGAAGAAGTTCTTCATGTAGAAAAAAAGAAAGCCCCACAGAGAATCCCATACCTCTTGAGCACATGCAAGGAGTTCCCGGGGAAGTTCTTCCTGGGGTATCTTCCCCGTGTCAAGCCCCGTGTAGAGTATATCAGTGTGACGCCGGACGGATTCCGGTATCGAGGAAGAGTGCATGCCACGTTAAACGGTCTGTTTAGATGGTTTAAGGAGCATTTCAGGGACCCCATACCTGGTACGCCTCGCCACAGAATGCCTCACGCCATGTCCGAGAGCAACACACCCTACACCCCAGGGGGTACCCCCTCCATTAACTCTGATGTTGATCCCGCTCGACTTGTACCTCAGCTTCAACAGCATTTCCCTCGGGGAATCACCGCCGACCCCAAGGTTTACTCAGCCCTGGCCGCAGTTGCTAGGCAACAACAACAGCAGGAGACGCAAAAGAAGGCAGCAAGTACTCAGCTCACGCCTGCGCAGTGGGGCGCCGCCGCAGCCCAACACATACAGCGTCAAAATAAACAGCGAGCTCAGCTTCAACAAACACCTACACAGCTAACCCCAACACAGCAGACACCAACGCAACAGGGATACCAACAATTTCCACAGTACGGTTACTATCAGCAGCACCAGGATCAAACTCCAACTCCGACAACCACTTATGGATACCAGCAGACATACAGTGGCAGCAAGGGGTCTGGAAAAGAGAGTAGCAAGAGTCGGTAG

Transcript

evm.model.contig_34571.2

ATGTCTTTGATCTTTTCGCTATTCCAGAATGAATTTCGTGAGTACCCCTCCCTGTTGCGTCATGCGGTGTCTCTAGGCCGTAGGATCCAGGATCCGCTGGCCGAGTTCGCTGCGCTGTGTGTTGAGGAAGATGAACTTCTGTGTTTAAGACTGCATCCGTTCCAGGACCACGTATCCAAAGAGCATCTTGTCAAAAGTCTTCATCAGGAATTCGTGACCGTAGTAAATGACGTAGGGGTTGACCCCAACCGGCTTTTGGAGCATCCCCATACTGTCGCACTGCTGCAGTTCGTGTGTGGACTGGGACCCAGAAAAGCGTCATCTTTATTGAAGAGTCTACGACAGCAGTGTACCAGACTGGAGAACCGCTCCCAGCTCGTGACCGTTTGTGGCCTGGGTCCTCAGGTGTTTTTAAACTGCGCAGGCTTCATTAAGATTGACACAGCAGCCATTAGTGACACGACAACGAACTACATCGAGGTTCTCGACGGTTCACGTGTTCATCCGGAGACCTACGAGTGGGCGAAGAAAATGGCCGTGGATGCGCTCGACTACGATGAGGCGACTATGGAATCGAACCCGTCGTCCGCTTTGGAAGAAATTCTGGAGGCTCCCGACAGGTTAAAAGACCTGGATCTAGACGCGTTTGCCGAAGAACTGGAACGTCAAGACTACGGGAATAAGCGGATTACGTTATACGACATCCGAGACGAGCTGTTTGGCCAATACAGGGAACGCCGCACTCCGTTCCGTGCTCTGACGGTAGAGGAACTCTTCAGACTGCTGACGGGTGAGACCAGCGAGTCTCTTTATGTGGGCAGGATGGTGATATGTACTGTGACTGGGTTTGCTAACAGAAAACCTCCTCGTGATATGATCGATCAGGCGCAACCTGTGAGAAATGACGAGACAGGCCAGTGGCAGTGTCCGTTCTGTTTACAGGATACCTTCCCTGATCTGAGCGAGGTGTGGACACATCTTGATAACGGAAGCTGTGCTGGTCAGGCGGTGGGTGTTCGTACCAGACTGGAAAACGGCCTGTCTGGGTTCATTCCGACAAAGATGATCAGCGACAAGCATATCAGCAGTCCTCACGAGAGAGTCAAGGTGGGAATGACCCTTCACTGTCGCGTGACACGAGTGAACATGGAGCGGTTTCAGTTGGATCTGACGTGTCGTTCATCGGATCTCGCTGATAAAGAAGGAAAGTTCAGTCTTCCCAAAGATTTGTATTTCGATGAAGATGCGGCGGACAGTGACAagaaagatgaggaagcggcgAAGAAGAAAGCTAACAGACCAAAATACGTGAAGCGTGTGATAGTGCATCCTGCCTTCAAGAACATCTCATTCAAGGACGCTGAGAGGCTCTTAGCTGAAATGGACCAGGGAGAATGTATTGTCCGACCCAGCAGTAAGGGCGCAGATCACCTGACTGTCACGTGGAAGGTTGATGAAGGAGTTTACCAACACGTGGACGTGCGtgaagaaggaaaagaaaacgccTTCAGCCTTGGACGATCACTTTGGATTGACAGCGAGGAATttgaagatctcgatgaaatcATTGCTCGGCACGTTCAACCCATGGCGTCATTTGCTCGGGAAATTCTTAACCACAAGAACTACAGAGCAGTGGACGGAGTCAAATCCAAGCTTGAAGAAGTTCTTCatgtagaaaaaaagaaagcccCACAGAGAATCCCATACCTCTTGAGCACATGCAAGGAGTTCCCGGGGAAGTTCTTCCTGGGGTATCTTCCCCGTGTCAAGCCCCGTGTAGAGTATATCAGTGTGACGCCGGACGGATTCCGGTATCGAGGAAGAGTGCATGCCACGTTAAACGGTCTGTTTAGATGGTTTAAGGAGCATTTCAGGGACCCCATACCTGGTACGCCTCGCCACAGAATGCCTCACGCCATGTCCGAGAGCAACACACCCTACACCCCAGGGGGTACCCCCTCCATTAACTCTGATGTTGATCCCGCTCGACTTGTACCTCAGCTTCAACAGCATTTCCCTCGGGGAATCACCGCCGACCCCAAGGTTTACTCAGCCCTGGCCGCAGTTGCtaggcaacaacaacagcaggagACGCAAAAGAAGGCAGCAAGTACTCAGCTCACGCCTGCGCAGTGGGGCGCCGCCGCAGCCCAACACATACAGCGTCAAAATAAACAGCGAGCTCAGCTTCAACAAACACCTACACAGCTAACCCCAACACAGCAGACACCAACGCAACAGGGATACCAACAATTTCCACAGTACGGTTACTATCAGCAGCACCAGGATCAAACTCCAACTCCGACAACCACTTATGGATACCAGCAGACATACAGTGGCAGCAAGGGGTCTGGAAAAGAGAGTAGCAAGAGTCGGTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14635 all species →	HHH_7	Helix-hairpin-helix motif	Domain	Interproscan
PF14633 all species →	SH2_2	SH2 domain	Domain	Interproscan
PF17674 all species →	HHH_9	HHH domain	Domain	Interproscan
PF00575 all species →	S1	S1 RNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042066 all species →	Homologous_superfamily	Spt6, Death-like domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR017072 all species →	Family	Transcription elongation factor Spt6	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR010994 all species →	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR032706 all species →	Domain	Transcription elongation factor Spt6, helix-hairpin-helix motif	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR035019 all species →	Domain	Spt6, SH2 domain, N terminus	Interproscan
IPR035018 all species →	Domain	Spt6, SH2 domain, C terminus	Interproscan
IPR035420 all species →	Domain	Spt6, SH2 domain	Interproscan
IPR041692 all species →	Domain	HHH domain 9	Interproscan
IPR037027 all species →	Homologous_superfamily	YqgF/RNase H-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10145 all species →	TRANSCRIPTION ELONGATION FACTOR SPT6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0008023 all species →	Cellular Component	transcription elongation factor complex	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan
GO:0034728 all species →	Biological Process	nucleosome organization	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0140673 all species →	Biological Process	transcription elongation-coupled chromatin remodeling	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_34571.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.