Gene detail

Detailed information of evm.model.contig_35137.2 in Platygyra sinensis

Genomic Location: contig_35137:29649...30344
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009140 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01034 all species →	Syndecan	Syndecan domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027789 all species →	Domain	Syndecan/Neurexin domain	Interproscan
IPR001050 all species →	Family	Syndecan	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10915 all species →	SYNDECAN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16336	SDC2, CD362; syndecan 2	-	Proteoglycans	ko00535	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.