Gene detail

Detailed information of evm.model.contig_35222.1 in Platygyra sinensis

Genomic Location: contig_35222:511...19845
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_35222.1

ATGGCTTCTCAGAAGCGTGGTCTTGTAATCAGCGCCCGCTTCCAGTTTATAGCACATATGGAATTCTATTTGCCGGGAGAAAAGAACAGATGTTATTTACCAATCAGCACCTACACTACTTACAACCTTGTGAAGGAGGCGCACCCAAATCAGCAGTACTCTTGGACGCAGATTCCTAACTATGGCCACCTTGACTGCATATACGGCAGAGATGCAGTTCATGATGTCTATCCACACATTCTGAAGGCTTTGGATGCGCATGCGCATGATAGTCTGCATCTCAATGATTCTGCTTGCCGTCATGTATTTAAGGCTGTGAAGTCGTTAATGTGCAAGTCAGGGACAACGAACCAAACTGACGCTTTGAGAGATCATGAAACAGCATGCTTGCCTCTTCCATGCAAGCAAGAACTGACATTCCCAGATTTAGACGACACGCCAATGGACATGAATGATTTTCCTGATGACTTGGATGAAGATGATTCTGGCTCTCAAGAAGAGCTGTCCAGTGTCTGGGAAGAAATAAATAAACTAACGCCTTTGGGCTGTGTCGTCACATGGCCATCCAAGCCGAATAAGAAGGTTCCAGTAACAAGAGAACCAAGATATGATCAGTCACAAGACGGGCTTGAAGAAGTGATCACTGTTCGTGAAATGATCAATCCCAATGATCCAGTCAAGAATATGATCATTATCATCAGTGATCTTCATTTGAATAGTATCTGGTGTCAGAAGGAGGAGGAGCGATTTGTAAAATTTATCAATGATTTGACAAAAATGTCAAAGACTTGTCTCCACACATTTGTCCTCCTTGGAGATATTCTGGAGATGTGGCTGGAAAGAGTTGATGCAAACATTAAGACTATCAGTGAGCGAATCAAAGAATGGCAATCAAATGAAACATGCCGTGTGCTGTTCGACAGCATCCGTAAAATGACTGAAGAAGATGACGTCAAGGTGTTTTACCTCCGAGGAAATCATGACCATGAGATGGACCCAGAAACTGTGAAAATATTGATGGGAGAAAAGGTGGAGTTTATTGAAGGCTCTCTCATTTATGTCATCAAAAGCGATGATGGGCAGACGTATCGAATCCGCTTCGCACATGGACATGACTGGGATATTTTCAACACCTACTCCTTGGCTCATCCTCAGGACCCTCTTGGTGGCAGACCGTTTGGGTATTACGTCACACGTGCAGTGGCTACAGCAGATGCACATAAGAGTGAAACAGAAGTGAGCAAAGAAATTAGAAACAACAAGTACAACAAAGACACAACAGAACTTGAAAAATGGCAAAGTGAGATTTGGCCTGATCTGAATATTGAAGTTGGAAACGAAATGGAAGACTCAAGGCTGAATGCCATAAAGCAACTGTTTACGTTCGTAAAAGGTCGACTGAATTTTAGCTGCAAGAGTACAACAGCAGCTAATGTTGAGCTTACGGAACCTCTATTAGAAAACTGGCTCAAGAATGACCATATTACCGTTCTTATGCAAATTGTATCCGAGTTATTGAGCAAGCTCAAATCCCATTTATCATCATCTTTCATCATGGAAATACTGTCCAAGTCCTTTGTGCAGGAAAAGTTTTCCAGGTCCTTGATGGAAAGAGTACTGGGCAGAAGTATTTCTAAGGATGAGTACATCCTCTTGGACAAGGACAAGGGGATCAGGATGGCAAACGTGTTCAAATACCCTTTCTTCAAACGTGCCATCGATAAGTTCGGTGCGAGCTGGACTTTCAGCATGCTGAAAGGTTCATTGGGACGATTTGACGACTTCCTGTCACGATGTGAAGAAGACGTTGTTGTGTTAGCTCACACCCACACTTGGAAAACACACGAAATTGAGTGTACCAAAAATGGAGATATCTTCTACATCAACACAGGAACCTGGGTAGATCGTGCAAGTGTTTGCTTGGTAGAGAACATTCAGGGAAAGTTTCAAAAACTTCCTCGGCAACTTTTATTTCTGAGGAATAACCTTAAAGGTACCACTTTAAAACGGAATGGACTCGATTACCAGCTGCTGTTTATGAAAGGAGTCTGCGGTAGTAAACCTGACTCGAGAGAGACTGGTAGAAACGAAATAAGGTTCTCCTTTGCCCATATTGTTGCGCCGACGAAAGAAAAACCCGGCCAAGTTGAAATCAGACGATGCCAACTTAATCCAGAGTGA

Transcript

evm.model.contig_35222.1

atggcttctCAGAAGCGTGGTCTTGTAATCAGCGCCCGCTTCCAGTTTATAGCACATATGGAATTCTATTTGCCGGgaGAAAAGAACAGATGTTATTTACCAATCAGCACCTACACTACTTACAACCTTGTGAAGGAGGCGCACCCAAATCAGCAGTACTCTTGGACGCAGATTCCTAACTATGGCCACCTTGACTGCATATACGGCAGAGATGCAGTTCATGATGTCTATCCACACATTCTGAAGGCTTTGGATGCGCATGCGCATGATAGTCTGCATCTCAATGATTCTGCTTGCCGTCATGTATTTAAGGCTGTGAAGTCGTTAATGTGCAAGTCAGGGACAACGAACCAAACTGACGCTTTGAGAGATCATGAAACAGCATGCTTGCCTCTTCCATGCAAGCAAGAACTGACATTCCCAGATTTAGACGACACGCCAATGGACATGAATGATTTTCCTGATGACTTGGATGAAGATGATTCTGGCTCTCAAGAAGAGCTGTCCAGTGTCtgggaagaaataaataaactaacGCCTTTGGGCTGTGTCGTCACATGGCCATCCAAGCCGAATAAGAAGGTTCCAGTAACAAGAGAACCAAGATATGATCAGTCACAAGACGGGCTTGAAGAAGTGATCACTGTTCGTGAAATGATCAATCCCAATGATCCAGTCAAGAATATGATCATTATCATCAGTGATCTTCATTTGAATAGTATCTGGTGTCAGAAGGAGGAGGAGCGATTTGTAAAATTTATCAATGATTTGACAAAAATGTCAAAGACTTGTCTCCACACATTTGTCCTCCTTGGAGATATTCTGGAGATGTGGCTGGAAAGAGTTGATGCAAACATTAAGACTATCAGTGAGCGAATCAAAGAATGGCAATCAAATGAAACATGCCGTGTGCTGTTCGACAGCATCCGTAAAATGACTGAAGAAGATGACGTCAAGGTGTTTTACCTCCGAGGAAATCATGACCATGAGATGGACCCAGAAACTGTGAAAATATTGATGGGAGAAAAGGTGGAGTTTATTGAAGGCTCTCTCATTTATGTCATCAAAAGCGATGATGGGCAGACGTATCGAATCCGCTTCGCACATGGACATGACTGGGATATTTTCAACACCTACTCCTTGGCTCATCCTCAGGACCCTCTTGGTGGCAGACCGTTTGGGTATTACGTCACACGTGCAGTGGCTACAGCAGATGCACATAAGAGTGAAACAGAAGTGagcaaagaaattagAAACAACAAGTACAACAAAGacacaacagaacttgaaaaatggcaaagtgagatttggCCTGATCTGAATATTGAAGTTGGAAAcgaaatggaagactcaaggctgaatgccataaagcAACTGtttacgttcgtaaaaggtcgactgaattttagctgcaagagtacaacagcagctaatgttgagcTTACGGAACCTCTATTAGAAAACTGGCTCAAGAATgaccatattaccGTTCTTATGCAAATTGTATCCGAGTTATTGAGCAAGCTCAAATCCCATTTATCATCATCTTTCATCATGGAAATACTGTCCAAGTCCTTTGTGCAGGAAAAGTTTTCCAGGTCCTTGATGGAAAGAGTACTGGGCAGAAGTATTTCTAAGGATGAGTACATCCTCTTGGACAAGGACAAGGGGATCAGGATGGCAAACGTGTTCAAATACCCTTTCTTCAAACGTGCCATCGATAAGTTCGGTGCGAGCTGGACTTTCAGCATGCTGAAAGGTTCATTGGGACGATTTGACGACTTCCTGTCACGATGTGAAGAAGACGTTGTTGTGTTAGCTCACACCCACACTTGGAAAACACACGAAATTGAGTGTACCAAAAATGGAGATATCTTCTACATCAACACAGGAACCTGGGTAGATCGTGCAAGTGTTtgcttggtagagaacattcagggaaagtttcaaaaacttcctcggcaacttttatttctgaggaataaccttaaaggtACCACTTTAAAACGGAATGGACTcgattaccagctgctgtttatgaAAGGAGTCTGCGGTAGTAAACCTGACTCGAGAGAGACTGGTAGAAACGAAATAAGGTTCTCCTTTGCCCATATTGTTGCGCCGACGAAAGAAAAACCCGGCCAAGTTGAAATCAGACGATGCCAACTTAATCCAGAGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR043461 all species →	Family	UDP-2,3-diacylglucosamine hydrolase LpxH-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34990 all species →	UDP-2,3-DIACYLGLUCOSAMINE HYDROLASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0008758 all species →	Molecular Function	UDP-2,3-diacylglucosamine hydrolase activity	Interproscan
GO:0009245 all species →	Biological Process	lipid A biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_35222.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.