Gene detail

Detailed information of evm.model.contig_35804.5 in Platygyra sinensis

Genomic Location: contig_35804:13116...17014
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_35804.5

ATGACTGAAACAGAGTCTGATAAGTTTCAAGAAGCCCGTGCAACTTGTGCCAAGATCAATGGCTATGATTATTTGGAATGCTCTGCTAAAACAAAGAAGGATATAAGAGTATCAAAATATCTGCGTAGCGACGAATTTACTGTTAAAGGCGGTAGCAATGGCGTCAAAGGTCGCTTGAAGTCCTCGCTTAATTTCTGGGTTGAAACTTTAGCTGCTTCAGATTTTGTGCTTGACATGATTAGACGGGTTATAGGTTACCATTTGCTGATCAACCAGATAAATGTTCCGCCACAGCAGCAAGCTTTATTCAGCGCAAAGAGCTTTCTTCTTCTGGTCTTCTTTGTAACGAGGAAAAGTCGCACTGCCGGAACCCCAATGCAAATTGGCGAGTGGCTCGGTTTCGTGATCGATTCTATTTCAATGTCATTTCGGATTCCTGAGAAGAAAGTCTCCAAACTTAAGGGATTGTTAGATTCTGCGATTAAGGCGGGGTACTCTTCATTTCGTGAGTTAGCGAGAATCGCTGGTTCTATCATTTCAGTTGCTTTGGCAGTCGGCCCGATCTCTCGTCTTTTAACCAGGCAGATGTACTTCGCCATTGAAACCAGGTCAGCATGGGACAACACAATTTATTTTTCTCCCAGTCTTCTACTCGAGCTCAGATTTTGGTTTTGCAACATCGATTGCTTCAACGGTTATTCTATAAGGCCACCATTAGCGACCCATACCGTTGTGTTTTCCGATGCTAGTGATGTGGCTTTCGGAGGTTTCTCAACTTCTCTAGACGGCACCGTTGTTAGCGGCATGTGGGAACCCGAGGATATTGGCCAAAGTTCTACGTACCGCGAGCTGAAAGCTCTTTATTTCGTGTTGCTCTCCTACGTTGCTCAATTAAAACACAAGAGAGTTAAGATTTTTACTGACAATCAGGGCGCCGCCAGAATTGTTTCTATTGGAAGCTCCAAAACTAATCTCCAGGCTCTAGCTATGGACATTTTTAATCTCTGTCTTGTTAACAACATCGTTCTGGAAGCGCAATGGATCCCAAGGTCACTTAATGAAAGAGCAGATCTTCTCAGCAGATTTGTTGACAAAGATGACTGGTCCATCAATCCTGCTGTATTTCGAGTTATTGACGCCAAATGGGGCCCTCACACAATTGATCGATTTGCGTCACATTACAACGCCCAGGTTCCAAGGTTCAACTCTAAGTTTGCCTCCCCCGGCTGCAGTGGTGTTGACGCCTTGTCCCAGGATTGGCGGGATGAGAACAATTGGGTCTGCCCTCCTGTGAGTGCCATCGTGCCTTCTGTTAGAGCTCTCTCGTCGTGCTCTGGTTACGGCACTTTGATCGTCCCTCAGTGGCCTTCGGCCTATTTTTGGCCCTTTTTGCATGACAGCTCTTCCCAGTTTAAGTCTTTCGTTAAAGGAGTGTTTGAGCTTCCTTGTATAGAAGACCTCTTGTTAGAAGACGTTCTACAATCGGGAATTTGGCGCGAAGCAAACTCTCTGGTTGATCCATCTTTGCGTAGGCTTGTTCCAAACCTTCTCCATTTACAGTTGGAATCCAAGGCTCCTTCCACCGTCCAGAAATACAGATCTGGCTGGCTGAAGTGGCGTCAGTGGGCGGCTTCTAAGATTGGCGTTCAAGTTATCCCAGCAAAGCCTCTGCATGTTGCGCTCTTCATTAGTGAGCTTACTGTAATTTCAGTTAACAACAATACGGGGATATCTAATATAGAGTCAGTTCTTTACGGCATTAAATGGGGTCATAGTCTGGCCGGGATTGTAGATTGCCCTACTAGTCACCCCCTTGTTAAGTCATCATTAGAGGGAGCTAGAAGGAAGCTTGCACGTCCTGTTCAGCCCAAAGAGCCTTTATCCGTTGACACAGTTTGTAGGATCGCTGATCATTATATTTCTAGTAGTTCTCTGGCTGTTATTCGTTTTCTTTTCATTCTCTTGGTTGGCTTCGCTGGGTTTTTCCGTATGGACGAAATTCGTAATTTGTCTGTTAAAGATGTCTCTATTTGCAGTGAATACATGTCAGTTTTCATTCCGAAACGCAAGAATGATCAGTACAGGGAGGGGCACACATCCCTCCTGGCAAGGTCTCATAAGGCTACTTGCCCAGTTTCTATTACCGAGAGGTTAATCAAGCTTCTTCCTTTATCTAGTGAGTCATCTTCTCCCCTCGTTAGACGAATTGTTAAATCCAAGTCTAAGGAGTATTTTCATGTTTCTAAAGGCATTTCTTACACGACACTAAGAGAGGAATTTAGGAAATACGTTACACCATTTGTAGATGACATTGCGAGGTACGGCACGCACAGCATCAAGTCAGGCGCCGCATCAAATCCTTCGTGTAGGAATGTATCCGCTGATCTGCTGGACATGCATGCCGGCTGGAAATGTGCCAATTCAAAGAACAGATACATTAAGCACACTGTTAATGATCGCTTAAAAGTTGCCCGATCTATTGCTCTTTAG

Transcript

evm.model.contig_35804.5

ATGACTGAAACAGAGTCTGATAAGTTTCAAGAAGCCCGTGCAACTTGTGCCAAGATCAATGGCTATGATTATTTGGAATGCTCTGCTAAAACAAAGAAGGATATAAGAGTATCAAAATATCTGCGTAGCGACGAATTTACTGTTAAAGGCGGTAGCAATGGCGTCAAAGGTCGCTTGAAGTCCTCGCTTAATTTCTGGGTTGAAACTTTAGCTGCTTCAGATTTTGTGCTTGACATGATTAGACGGGTTATAGGTTACCATTTGCTGATCAACCAGATAAATGTTCCGCCACAGCAGCAAGCTTTATTCAGCGCAAAGAGCTTTCTTCTTCTGGTCTTCTTTGTAACGAGGAAAAGTCGCACTGCCGGAACCCCAATGCAAATTGGCGAGTGGCTCGGTTTCGTGATCGATTCTATTTCAATGTCATTTCGGATTCCTGAGAAGAAAGTCTCCAAACTTAAGGGATTGTTAGATTCTGCGATTAAGGCGGGGTACTCTTCATTTCGTGAGTTAGCGAGAATCGCTGGTTCTATCATTTCAGTTGCTTTGGCAGTCGGCCCGATCTCTCGTCTTTTAACCAGGCAGATGTACTTCGCCATTGAAACCAGGTCAGCATGGGACAACACAATTTATTTTTCTCCCAGTCTTCTACTCGAGCTCAGATTTTGGTTTTGCAACATCGATTGCTTCAACGGTTATTCTATAAGGCCACCATTAGCGACCCATACCGTTGTGTTTTCCGATGCTAGTGATGTGGCTTTCGGAGGTTTCTCAACTTCTCTAGACGGCACCGTTGTTAGCGGCATGTGGGAACCCGAGGATATTGGCCAAAGTTCTACGTACCGCGAGCTGAAAGCTCTTTATTTCGTGTTGCTCTCCTACGTTGCTCAATTAAAACACAAGAGAGTTAAGATTTTTACTGACAATCAGGGCGCCGCCAGAATTGTTTCTATTGGAAGCTCCAAAACTAATCTCCAGGCTCTAGCTATGGACATTTTTAATCTCTGTCTTGTTAACAACATCGTTCTGGAAGCGCAATGGATCCCAAGGTCACTTAATGAAAGAGCAGATCTTCTCAGCAGATTTGTTGACAAAGATGACTGGTCCATCAATCCTGCTGTATTTCGAGTTATTGACGCCAAATGGGGCCCTCACACAATTGATCGATTTGCGTCACATTACAACGCCCAGGTTCCAAGGTTCAACTCTAAGTTTGCCTCCCCCGGCTGCAGTGGTGTTGACGCCTTGTCCCAGGATTGGCGGGATGAGAACAATTGGGTCTGCCCTCCTGTGAGTGCCATCGTGCCTTCTGTTAGAGCTCTCTCGTCGTGCTCTGGTTACGGCACTTTGATCGTCCCTCAGTGGCCTTCGGCCTATTTTTGGCCCTTTTTGCATGACAGCTCTTCCCAGTTTAAGTCTTTCGTTAAAGGAGTGTTTGAGCTTCCTTGTATAGAAGACCTCTTGTTAGAAGacGTTCTACAATCGGGAATTTGGCGCGAAGCAAACTCTCTGGTTGATCCATCTTTGCGTAGGCTTGTTCCAAACCTTCTCCATTTACAGTTGGAATCCAAGGCTCCTTCCACCGTCCAGAAATACAGATCTGGCTGGCTGAAGTGGCGTCAGTGGGCGGCTTCTAAGATTGGCGTTCAAGTTATCCCAGCAAAGCCTCTGCATGTTGCGCTCTTCATTAGTGAGCTTACTGTAATTTCAGTTAACAACAATACGGGGATATCTAATATAGAGTCAGTTCTTTACGGCATTAAATGGGGTCATAGTCTGGCCGGGATTGTAGATTGCCCTACTAGTCACCCCCTTGTTAAGTCATCATTAGAGGGAGCTAGAAGGAAGCTTGCACGTCCTGTTCAGCCCAAAGAGCCTTTATCCGTTGACACAGTTTGTAGGATCGCTGATCATTATATTTCTAGTAGTTCTCTGGCTGTTATTCGTTTTCTTTTCATTCTCTTGGTTGGCTTCGCTGGGTTTTTCCGTATGGACGAAATTCGTAATTTGTCTGTTAAAGATGTCTCTATTTGCAGTGAATACATGTCAGTTTTCATTCCGAAACGCAAGAATGATCAGTACAGGGAGGGGCACACATCCCTCCTGGCAAGGTCTCATAAGGCTACTTGCCCAGTTTCTATTACCGAGAGGTTAATCAAGCTTCTTCCTTTATCTAGTGAGTCATCTTCTCCCCTCGTTAGACGAATTGTTAAATCCAAGTCTAAGGAGTATTTTCATGTTTCTAAAGGCATTTCTTACACGACACTAAGAGAGGAATTTAGGAAATACGTTACACCATTTGTAGATGACATTGCGAGGTACGGCACGCACAGCATCAAGTCAGGCGCCGCATCAAATCCTTCGTGTAGGAATGTATCCGCTGATCTGCTGGACATGCATGCCGGCTGGAAATGTGCCAATTCAAAGAACAGATACATTAAGCACACTGTTAATGATCGCTTAAAAGTTGCCCGATCTATTGCTCTTTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05869 all species →	Dam	DNA N-6-adenine-methyltransferase (Dam)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052055 all species →	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan
IPR010998 all species →	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR008593 all species →	Family	DNA N-6-adenine-methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0009007 all species →	Molecular Function	site-specific DNA-methyltransferase (adenine-specific) activity	Interproscan
GO:0009307 all species →	Biological Process	DNA restriction-modification system	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_35804.5.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.