Gene detail

Detailed information of evm.model.contig_35815.2 in Platygyra sinensis

Genomic Location: contig_35815:8970...13936
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_35815.2

ATGCAAGAAGGCTTCATGACTTCAGAAGGTCTTCCAGCATTACTTGTTTATAAAAGTGGACAAATTATTGGAAATTTTGTCAAGTTAGAAGACACCTTTGGACAAGACTTCTTTGCTGTTGATGTAGAAAGCTTCTTAATTGAAGCCCCGTATGGAGCTGCCATGTTGGTGTCTCCATGGTACACCAACATGGCAGCCGGAAAATGGTTTACTACTGTCAATGCTCGGGATCAAGTCACAGAAAAAAAACATTTACATAAGCAGACATTGCACTTTGATGTGTGTGGAATAAACATTACTTGTCCTCGAACTACAATACCAAATAAGGGTTACACCGGTCCCCGTGCCCACAGAGTCAATCCTAACCTTAAGTCGGCTACACTCCATCCTCAAGCAGTCTCCGATGCACTAGCTAAAGAAGTATCTCGTGGTCACACTGCCGGTCCTTTTCAAGAGCCTCCAATTCAAAATCTACAATGCTCCCCCCTAGGGGTAGTACCAAAGAAAGACGGAACATGGCGCATCATCATGGATCTCTCCTCCCCTCATGGCTCCTCGGTGAATGACTTCATACCTAAGGAAACCTACACATTACACTATGCCACCTTCGATCAAGCTCTCGCTCTTGTTGCCCAGCACGGCCAGGACGCTCTGATGGCTAAACTTGATATCAAACACGCTTTTCGCCTCTGTCCTGTTCACCCGGCTGACTTGGAACTTCTTGGCATTCATTGGGAAGGCCAATACTACATCGACCTTCGTTTACCCTTTGGCTTGCGCTCCTCCCCATACCTCTTTAACCGTCTTGCCGATGCTTTTGAATGGATTCTTAAAAACAATTACATGATTACTGATCTCATGCACTACCTAGATGATTACTTCACTGTGGGGCCACCAAACTCCAAGACCTGTGCCGACAATGTCAAAATTATGATCCGCATGGCCTCACACCTCGGGATCCCTCTGGCTCCTGAGAAGCTGGAAGGTCCAACCACTTCCCTGGTCTTCCTTGGAATCTTAATTGACACCAATCGTATGGAAACTGCCCTACCAGAAGACAAACTCAAGGAGCTTCTTGCTGAACTTCAGTGTTGGTGTTCTCGTAGAAAGTGCCTTAAGCGCGAGTTGCTGTCCCTCATAGGCAAACTTAACTGGGCCTGTCGCGTCATCCCTGCGGGGCGTATATTCCTGCGTCGCCTTATTGACCTAAGTACAACTGCAAGGCTCCCCCACCACCACATTTCCATGAACCTTGAGGCTCGCCGCGATATTGCCTGGTGGCAAAGATTCCTTCCCACTTGGAATGGCCGAGCAATCATCCCTGATCCATACTGGTCAAGATCCCCAGATTTGGCCCTCTTTACAGATGCGTCTGGGACCCTTGGATATGGCATTTACTACTCTGGTCACTGGATTGCTGACACCTGGCCACCTCCCCTTCAAGGTCGCTCTATCCAATGGAAGGAGCTCTATCCTATTGCTCTCGCCTGCCTCCTGTGGGGTCATTCGTGGTCGGGAAAGAAAATTCTCTTTCACTGCGACAATCAGGCAGTCGTTGATATCTGGGCTTCTGGCACTTCGCGAGACCCCGACATCATGCACCTTGTCCGCTCCATATTTTTTAGTGATGGTGAGGTTCCATCAGCTCGCCCCAGCAGCGGACCCAACGCCAACACCTATCCCTCCATCAGCCAGGACCCTCTGGAACGTCGTTTAGAGTTCCTCCAGTCTCAAGCCATCGCTGACTCCACTCGTCGCACTTACTCGACTGGCGTGCGAAGGTACATCACCTTTTGCACCTCTCGGCAATGGCAGAGTTTCCCAGCTTCAGAATATACACTGCGTTATTTTGCTGCCTTCCTGGCGGACCAAGTTTCTTACAGGACTGTCAAGTTGTACATGGCCAGCATTCGTTTCTTCCATGTTGAGAACAGCCTCCCTGACCCATTCCGGGACGCCCCATTACTCCATCTACTCCTGCGGGGCATCAAGCGCAGTGTGGGCCTCTCCTCCAAGCGCCGCCTTCCCATCACCATGTCCCTTCTTCGGAAACTCAAGTCTGAATTGGCACAAGCACCTGACATCCTTCCGCGTGACAAACTCATGCTTTGGTCCGCCTTCACATTGGCCTTCTTCGCTTTCCTACGTTCAAGTGAGTTCACTTCACCTTCCACCTCTCAGTTCAATGCACAGTCACACCTCAGCGCCAGCGATATCTCCTTTAAATCGGATGGCTCCTTAAGTCTACACTTGAAGTGCTCCAAAACAGACCCTTATCGCCAAGGTTGCTCCCTCTTGATTGCCCCATCAGGCCGCTCCGTCTGTGCAGTTCGTGCGATTAAAAAATACATGGCCCATCACCCCTTGAATTCGGATGGCCCCTTCTACATTTTCCAGTCTGGCCTCTACCTCACCAGAGCCCAAGTCACCTCAATACTTCGTCTTCTTCTCAAACGCCTACACATTCCAACAGAGCTTTATGCCTCCCACAGCTTCCGAATCGGGGCAGCTACAACAGCAGCTGAGGCTGGCTTACCTCCGTGGCTCATTCAAACTCTTGGTAGATGGTCCAGCAATTGCTTTGCCCTCTACATCCGGACTCCCTCGTCTATTCTTCAGAAAGTACCAGGCCTGTTAGCTAATGCTGCTGCAGGAACACAGTCTGTCTGGAACCCTCAGGAAGGAAGTCGAACTTATTTGACATAA

Transcript

evm.model.contig_35815.2

ATGCAAGAAGGCTTCATGACTTCAGAAGGTCTTCCAGCATTACTTGTTTATAAAAGTGGACAAATTATTGgaaattttgtcaagttagaaGACACCTTTGGACAAGACTTCTTTGCTGTTGATGTAGAAAGCTTCTTAATTGAagccccgtatggagctgccatgttggtgtctccatggtacaccaacatggcagccggaaaatgGTTTACTACTGTCAATGCTCGGGATCaagtcacagaaaaaaaacatttacataagcagACATTGCACTTTGATGTGTGTGGAATAAACATTACTTGTCCTCGAACTACAATACCAAATAAGGGTTACACCGGTCCCCGTGCCCACAGAGTCAATCCTAACCTTAAGTCGGCTACACTCCATCCTCAAGCAGTCTCCGATGCACTAGCTAAAGAAGTATCTCGTGGTCACACTGCCGGTCCTTTTCAAGAGCCTCCAATTCAAAATCTACAATGCTCCCCCCTAGGGGTAGTACCAAAGAAAGACGGAACATGGCGCATCATCATGGATCTCTCCTCCCCTCATGGCTCCTCGGTGAATGACTTCATACCTAAGGAAACCTACACATTACACTATGCCACCTTCGATCAAGCTCTCGCTCTTGTTGCCCAGCACGGCCAGGACGCTCTGATGGCTAAACTTGATATCAAACACGCTTTTCGCCTCTGTCCTGTTCACCCGGCTGACTTGGAACTTCTTGGCATTCATTGGGAAGGCCAATACTACATCGACCTTCGTTTACCCTTTGGCTTGCGCTCCTCCCCATACCTCTTTAACCGTCTTGCCGATGCTTTTGAATGGATTCTTAAAAACAATTACATGATTACTGATCTCATGCACTACCTAGATGATTACTTCACTGTGGGGCCACCAAACTCCAAGACCTGTGCCGACAATGTCAAAATTATGATCCGCATGGCCTCACACCTCGGGATCCCTCTGGCTCCTGAGAAGCTGGAAGGTCCAACCACTTCCCTGGTCTTCCTTGGAATCTTAATTGACACCAATCGTATGGAAACTGCCCTACCAGAAGACAAACTCAAGGAGCTTCTTGCTGAACTTCAGTGTTGGTGTTCTCGTAGAAAGTGCCTTAAGCGCGAGTTGCTGTCCCTCATAGGCAAACTTAACTGGGCCTGTCGCGTCATCCCTGCGGGGCGTATATTCCTGCGTCGCCTTATTGACCTAAGTACAACTGCAAGGCTCCCCCACCACCACATTTCCATGAACCTTGAGGCTCGCCGCGATATTGCCTGGTGGCAAAGATTCCTTCCCACTTGGAATGGCCGAGCAATCATCCCTGATCCATACTGGTCAAGATCCCCAGATTTGGCCCTCTTTACAGATGCGTCTGGGACCCTTGGATATGGCATTTACTACTCTGGTCACTGGATTGCTGACACCTGGCCACCTCCCCTTCAAGGTCGCTCTATCCAATGGAAGGAGCTCTATCCTATTGCTCTCGCCTGCCTCCTGTGGGGTCATTCGTGGTCGGGAAAGAAAATTCTCTTTCACTGCGACAATCAGGCAGTCGTTGATATCTGGGCTTCTGGCACTTCGCGAGACCCCGACATCATGCACCTTGTCCGCTCCATATTTTTTAGTGATGGTGAGGTTCCATCAGCTCGCCCCAGCAGCGGACCCAACGCCAACACCTATCCCTCCATCAGCCAGGACCCTCTGGAACGTCGTTTAGAGTTCCTCCAGTCTCAAGCCATCGCTGACTCCACTCGTCGCACTTACTCGACTGGCGTGCGAAGGTACATCACCTTTTGCACCTCTCGGCAATGGCAGAGTTTCCCAGCTTCAGAATATACACTGCGTTATTTTGCTGCCTTCCTGGCGGACCAAGTTTCTTACAGGACTGTCAAGTTGTACATGGCCAGCATTCGTTTCTTCCATGTTGAGAACAGCCTCCCTGACCCATTCCGGGACGCCCCATTACTCCATCTACTCCTGCGGGGCATCAAGCGCAGTGTGGGCCTCTCCTCCAAGCGCCGCCTTCCCATCACCATGTCCCTTCTTCGGAAACTCAAGTCTGAATTGGCACAAGCACCTGACATCCTTCCGCGTGACAAACTCATGCTTTGGTCCGCCTTCACATTGGCCTTCTTCGCTTTCCTACGTTCAAGTGAGTTCACTTCACCTTCCACCTCTCAGTTCAATGCACAGTCACACCTCAGCGCCAGCGATATCTCCTTTAAATCGGATGGCTCCTTAAGTCTACACTTGAAGTGCTCCAAAACAGACCCTTATCGCCAAGGTTGCTCCCTCTTGATTGCCCCATCAGGCCGCTCCGTCTGTGCAGTTCGTGCGATTAAAAAATACATGGCCCATCACCCCTTGAATTCGGATGGCCCCTTCTACATTTTCCAGTCTGGCCTCTACCTCACCAGAGCCCAAGTCACCTCAATACTTCGTCTTCTTCTCAAACGCCTACACATTCCAACAGAGCTTTATGCCTCCCACAGCTTCCGAATCGGGGCAGCTACAACAGCAGCTGAGGCTGGCTTACCTCCGTGGCTCATTCAAACTCTTGGTAGATGGTCCAGCAATTGCTTTGCCCTCTACATCCGGACTCCCTCGTCTATTCTTCAGAAAGTACCAGGCCTGTTAGCTAATGCTGCTGCAGGAACACAGTCTGTCTGGAACCCTCAGGAAGGAAGTCGAACTTATTTGACATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13495 all species →	Phage_int_SAM_4	Phage integrase, N-terminal SAM-like domain	Domain	Interproscan
PF02114 all species →	Phosducin	Phosducin	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004107 all species →	Domain	Integrase, SAM-like, N-terminal	Interproscan
IPR002104 all species →	Domain	Integrase, catalytic domain	Interproscan
IPR052055 all species →	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan
IPR024253 all species →	Domain	Phosducin, thioredoxin-like domain	Interproscan
IPR010998 all species →	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR044068 all species →	Domain	Core-binding (CB) domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR001200 all species →	Family	Phosducin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0008277 all species →	Biological Process	regulation of G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_35815.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.