Gene detail

Detailed information of evm.model.contig_37610.3 in Platygyra sinensis

Genomic Location: contig_37610:26040...42470
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_37610.3

ATGGCGAAGAAAAACTCTGCGAAACAAGGAAAAGATTTCTTTGACACCCGAAACGGCCAAGTTCTTGCAGACTTGAATTTCGCTCAGCGAAGTAGTTCGGCAAATCCGAAGACAGAGATTGGATTCATTCGAGAAGCCTTCCCGCTTCGTAGCAAAGATGACATAACCTTAGTCCTGCAATCGTGCGATTACAATGTGGAAGCAGCTATTGCTTGCTTCACCAGTGGAGAAGCAGATAATATCTTGAAAGAGTGGAGTACCCAGGGAAGGAAGTCAAAGAATGCAAAAAAGAAGAGAAACAAGAAGAAGCAGGCAAAACATGATGAACCAGAGATAGCAGAAGTTGCTGCAATACCACAGAACGATGATGGTGTTTCACAGCTAAATCCATACAGCAATAAAGATGAAACGGTAACAACTGAAGAAGACTCCAAAAAGCCACACTTAACAGTGACAACAAGTCTGGAATGCCCATCCCCATCTCCTACTCTGCAGCTGCCTCATCCACCATCACCATCAAGCTCAGACGTCTCCCTTCCATCCTCAAGCTCTGACCAGCAAGCTGATGCCTCTCAGGACTCTGAACTTCCATCCAAGCATTCACACGGTAGTCCTACTAATAGCAGTCATACTCCTGCAAAGCTTGAAAGGATGACTTCAACTGGTCCTGATGCTCTTAAAAAGACAGTGAAAGATCTGCAGCGCTCCAGTGTTTCACTTCCAAGGTTTCAACTTCTCTTGGAAGAGGAGTGTGACAAGTCATTCAAATCAATTGCTGAGACATTCCAAGAATTAAGACAATGTTTGAATGAGAGGGAGGCTCATCTTCATGCTCAAATGGAAGAATTTAAGAGCCAGGCAGTTGAATTGTTGGAACAAAGGCAAGAAAATGCAGCTGCATTGAAGCTGAAATCAGACAGAGTTGGGGGAATGCAGGAGGCTGAGGTGACGCAGCTAAGGAGTGAAATAAAGAATTTTGTTACTGAACGAAAAATTGATGAGGAGCTAGCCAGAACGACCCGCTTTGTTGGAGATAGGGATAAGTTGAAGTCAATGATTGCAAATTTTGGAGAAGTTGTGCCTATCAAGAGCTGCTACAGTCCAGTAACGTTAAATCCCCCTCCTCTGCCTACAAAGAAAGCGGAAGGGAGCAACGCTGATAAAAAAGTGGCAAAAACTGTCTCGTCAGGCAAAGCGGGCTCATTGTCAGTTCCTGCTAATGTTGATGTTCCTGTTATCACTGTAGCTAATGATGAGAATTCTGCATCTAACCACAAGGCCCTTCAAGACGTGGTGGAACTACATGCAAAGCTTCAAGCAGCTCTTCAGCAACAAGGCTTGTCTTCTTCAACTGGAAAACACCCAGAAGGACAAAATCAAGTAAAACCTGACCACAAGAAGAACAGACCAAATTCAGCCTCTCAAGCACCACATCAACGGCAAGCATCAGGAAGATCTCAAACAGCACATCCACCAAGTCCACAACATAAAAAGGAAGGCAATCAGCAGGGAGAGAGGAGAAGGCCCTACCGATCAGCTGAACCAAGAGATTCTCGACAGGACAGGCAAAATAATAACCAATCAAACAGAAATCCCAAGAGATCAAATCAACGCAGGCCACCTCAAAGAAATTCTCAATCTGAAACTTCAAACCAAAAGGGTGAAGGAGCAAAAGATGAAGCTATTCATTCAACTGAAGCGCAAGAACATGCTAAGCTTGATAATGACAAACGACCTGAAAGCAGTGCTGAGAAAGTTACTTCAGAAAAATCTGTGACTGTTGAGGAGCAAGCAAAATCAGAAAACAGAACTCAGCGGTTGCAAGAACCGAGGGATGGTGGGGATGATAGGCGTGGCAATAGGAATAGAAGAAGAGGGGGTCGAAGGGAAGCCCCTGAGGGCCATAATATGGTCAGTGAGAGGGCCCAGAGAGAAAAGCATGTCAAGGGCCCAGCAGAAAAGCAAGGGAATGGCCCTGATGAAAAAGATCATCTTGAAAAAGAAGTAAAAACAGAAGTTAAAGGAGAAGGTAATGATGATGAGAAGCAGAACACTAACAAGGGAGACAGTCTAATGGAGAAAAATGGACAGAAAGACATTGCACCAGAACCTCCAGCTGTGAATGAACAGAAGACTAACAAAGACAACAATTCTGCAGCTTGTTTAAATGGTGAGAAAAACCAAGTTCCAGAGAAAGAGGAGGGAGAGAACAAGGATGCATTGCCTCAAAGAGCTAGCAGGCCACCCAGAAGGAGGGGCCCTCAGAGAGATAGGAAGGATGGGCCAAGGTCTGGGCCAGCACCAGAGAGGCACCTAAATGGAACCAAGTCAGTAGAAAATGGGATAGAAGAATATCATGGCAAGGAAAGCAGCAAGGCTGAAATCAAAATCTCAAAGCCAGTCGAAAATGTACAAAATCAGTTGGAATCCAAGAAAGAAAATCATTCTGAGCAAGAACTTGAAAAACACTTAGACAAAACAGTCCCTCCAAGAGTCAATGGGTATATTCCCATGAAAGAAATTAATGAGGTTAGTATAGGTAGATGA

Transcript

evm.model.contig_37610.3

ATGGCGAAGAAAAACTCTGCGAAACAAGGAAAAGATTTCTTTGACACCCGAAACGGCCAAGTTCTTGCAGACTTGAATTTCGCTCAGCGAAGTAGTTCGGCAAATCCGAAGACAGAGATTGGATTCATTCGAGAAGCCTTCCCGCTTCGTAGCAAAGATGACATAACCTTAGTCCTGCAATCGTGCGATTACAATGTGGAAGCAGCTATTGCTTGCTTCACCAGTGGAGAAGCAGATAATATCTTGAAAGAGTGGAGTACCCAGGGAAGGAAGTCAAAGAAtgcaaaaaagaagagaaacaagAAGAAGCAGGCAAAACATGATGAACCAGAGATAGCAGAAGTTGCTGCAATACCACAGAACGATGATGGTGTTTCACAGCTAAATCCATACAGCAATAAAGATGAAACGGTAACAACTGAAGAAGACTCCAAAAAGCCACACTTAACAGTGACAACAAGTCTGGAATGCCCATCCCCATCTCCTACTCTGCAGCTGCCTCATCCACCATCACCATCAAGCTCAGACGTCTCCCTTCCATCCTCAAGCTCTGACCAGCAAGCTGATGCCTCTCAGGACTCTGAACTTCCATCCAAGCATTCACACGGTAGTCCTACTAATAGCAGTCATACTCCTGCAAAGCTTGAAAGGATGACTTCAACTGGTCCTGATGCTCTTAAAAAGACAGTGAAAGATCTGCAGCGCTCCAGTGTTTCACTTCCAAGGTTTCAACTTCTCTTGGAAGAGGAGTGTGACAAGTCATTCAAATCAATTGCTGAGACATTCCAAGAATTAAGACAATGTTTGAATGAGAGGGAGGCTCATCTTCATGCTCAAATGGAAGAATTTAAGAGCCAGGCAGTTGAATTGTTGGAACAAAGGCAAGAAAATGCAGCTGCATTGAAGCTGAAATCAGACAGAGTTGGGGGAATGCAGGAGGCTGAGGTGACGCAGCTAAGGAGTGAAATAAAGAATTTTGTTACTGAACGAAAAATTGATGAGGAGCTAGCCAGAACGACCCGCTTTGTTGGAGATAGGGATAAGTTGAAGTCAATGATTGCAAATTTTGGAGAAGTTGTGCCTATCAAGAGCTGCTACAGTCCAGTAACGTTAAATCCCCCTCCTCTGCCTACAAAGAAAGCGGAAGGGAGCAACGCTGATAAAAAAGTGGCAAAAACTGTCTCGTCAGGCAAAGCGGGCTCATTGTCAGTTCCTGCTAATGTTGATGTTCCTGTTATCACTGTAGCTAATGATGAGAATTCTGCATCTAACCACAAGGCCCTTCAAGACGTGGTGGAACTACATGCAAAGCTTCAAGCAGCTCTTCAGCAACAAGGCTTGTCTTCTTCAACTGGAAAACACCCAGAagGACAAAATCAAGTAAAACCTGACCACAAGAAGAACAGACCAAATTCAGCCTCTCAAGCACCACATCAACGGCAAGCATCAGGAAGATCTCAAACAGCACATCCACCAAGTCCACAACATAAAAAGGAAGGCAATCAGCAGGGAGAGAGGAGAAGGCCCTACCGATCAGCTGAACCAAGAGATTCTCGACAGGACAGGCAAAATAATAACCAATCAAACAGAAATCCCAAGAGATCAAATCAACGCAGGCCACCTCAAAGAAATTCTCAATCTGAAACTTCAAACCAAAAGGGTGAAGGAGCAAAAGATGAAGCTATTCATTCAACTGAAGCGCAAGAACATGCTAAGCTTGATAATGACAAACGACCTGAAAGCAGTGCTGAGAAAGTTACTTCAGAAAAATCTGTGACTGTTGAGGAGCAAGCAAAATCAGAAAACAGAACTCAGCGGTTGCAAGAACCGAGGGATGGTGGGGATGATAGGCGTGGCAATAGGAATAGAAGAAGAGGGGGTCGAAGGGAAGCCCCTGAGGGCCATAATATGGTCAGTGAGAGGGCCCAGAGAGAAAAGCATGTCAAGGGCCCAGCAGAAAAGCAAGGGAATGGCCCTGATGAAAAAGATCATCttgaaaaagaagtaaaaacagAAGTTAAAGGAGAAGGTAATGATGATGAGAAGCAGAACACTAACAAGGGAGACAGTCTAATGGAGAAAAATGGACAGAAAGACATTGCACCAGAACCTCCAGCTGTGAATGAACAGAAGACTAACAAAGACAACAATTCTGCAGCTTGTTTAAATGGTGAGAAAAACCAAGTTCCAGAGAAAGAGGAGGGAGAGAACAAGGATGCATTGCCTCAAAGAGCTAGCAGGCCACCCAGAAGGAGGGGCCCTCAGAGAGATAGGAAGGATGGGCCAAGGTCTGGGCCAGCACCAGAGAGGCACCTAAATGGAACCAAGTCAGTAGAAAATGGGATAGAAGAATATCATGGCAAGGAAAGCAGCAAggctgaaatcaaaatctcaaagccAGTCGAAAATGTACAAAATCAGTTGGAATCCAAGAAAGAAAATCATTCTGAgcaagaacttgaaaaacactTAGACAAAACAGTCCCTCCAAGAGTCAATGGGTATATTCCCATGAAAGAAATTAATGAGGTTAGTATAGGTAGATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07139 all species →	SPATS2-like	Spermatogenesis-associated serine-rich protein 2-like	Family	Interproscan
PF02845 all species →	CUE	CUE domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009816 all species →	Family	SPATS2-like	Interproscan
IPR003892 all species →	Domain	Ubiquitin system component CUE	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15623 all species →	SPERMATOGENESIS-ASSOCIATED SERINE-RICH PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_37610.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.