Gene detail

Detailed information of evm.model.contig_38944.4 in Platygyra sinensis

Genomic Location: contig_38944:29272...38497
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14560 all species →	Ubiquitin_2	Ubiquitin-like domain	Domain	Interproscan
PF01302 all species →	CAP_GLY	CAP-Gly domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045172 all species →	Domain	Tubulin-folding cofactor B, ubiquitin-like domain	Interproscan
IPR000938 all species →	Domain	CAP Gly-rich domain	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR036859 all species →	Homologous_superfamily	CAP Gly-rich domain superfamily	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18916 all species →	DYNACTIN 1-RELATED MICROTUBULE-BINDING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007021 all species →	Biological Process	tubulin complex assembly	Interproscan
GO:0007023 all species →	Biological Process	post-chaperonin tubulin folding pathway	Interproscan
GO:0043014 all species →	Molecular Function	alpha-tubulin binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0035371 all species →	Cellular Component	microtubule plus-end	Interproscan
GO:0051010 all species →	Molecular Function	microtubule plus-end binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17262	TBCB, CKAP1, ALF1; tubulin-specific chaperone B	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.