Gene detail

Detailed information of evm.model.contig_39544.8 in Platygyra sinensis

Genomic Location: contig_39544:48247...55563
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02141 all species →	DENN	DENN (AEX-3) domain	Family	Interproscan
PF03456 all species →	uDENN	uDENN domain	Domain	Interproscan
PF10240 all species →	DUF2464	Multivesicular body subunit 12	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005113 all species →	Domain	uDENN domain	Interproscan
IPR051696 all species →	Family	DENN Domain-Containing GEFs	Interproscan
IPR023341 all species →	Domain	MABP domain	Interproscan
IPR001194 all species →	Domain	cDENN domain	Interproscan
IPR018798 all species →	Family	Multivesicular body subunit 12	Interproscan
IPR037516 all species →	Domain	Tripartite DENN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12296 all species →	DENN DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0032483 all species →	Biological Process	regulation of Rab protein signal transduction	Interproscan
GO:0000813 all species →	Cellular Component	ESCRT I complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_39544.8.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.