Gene detail

Detailed information of evm.model.contig_39648.5 in Platygyra sinensis

Genomic Location: contig_39648:28922...48805
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_39648.5

ATGGATGGGGTAAAGAAAGTTTATAACGAAGTTCCAAAGTCACCCCGTGATGATCGGCTCTATCGTGGTTTAGAACTGAACAACAATATGAGTGTTCTTGTGATCAGTGATCCCTTGACTGATAAATCCGCCGCGGCTTTGGATGTACACATCGGTAGCATGAGTGATCCAGCTGAACTACCAGGTCTTGCTCATTTTTGTGAACACATGCTGTTTCTAGGCACAGAAAAGTATCCATCAGAGAATTCATTCACTCAGTTTTTAAGTGAGAATGGTGGATCATCTAATGCTTTCACTGGTGGAGAACACACAAACTTTTACTTTGATGTCAAACATGAGTGTTTACACGAAGCATTGGATAGATACAGTAATGCGTATGCAAAAAACCCTGTATTTGTTGTCACGTCAGCACATGACTGCAAAGACGGAGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGTCTTGGCTTGTCTTGCCGAACGTGATCAAAATGCATGCCAGGAAGGTTCTGTTACACCTTGTGCGTGGGTAAACATGGAGGATGATGGAAGAAAAATTTTGTTTGCACAGTTCTTCCTTTGCCCATTGTTTAATTCAGATGCAACAGACAGAGAGGTTAATGCTGTTGAATCAGAACACCATAAGAATATCTTGTCTGATTCTTGGAGGCTGAATCAGTTGGACAAATCTTCAGTCAATCCATCTCATCCTTACAGTAAATTTGGATCAGGTAACAAGCTTACTCTTGAAACCAGACCAAAGGAAAAAGGCCTCAGTGTTCGTGATGAACTACTCAAATTTCACAGTTCATCCTACTCTGCCAATATCATGGCATTGGCTGTCCTGGGCAGAGAATCACTTGATGACTTGACAAACATGGTAATAAAGCTGTTTTCAGATGCTCAGGATAAAACTGTCACCATTCCTGAGTTTCCTGATCACCCTTATAGTGATGAACATTTGCAGGTAGAATTTAAAGTAGTGCCAATCAAAGAAATAAAACACCTAAATGTTTCATTCCCCATCCCTGATGTTAACCCACACTATGATAGTAAGCCTTGTCATTATATATCTCACCTTCTTGGCCATGAGGGTAAAGGAAGTTTACTTTCAGAACTCAAAACAAGAGGCTGGGTGAATGAACTTGTTGCAGGAGGAGCTAGTGGAGCAAAAGGGTTTATGTTCTTCATCTGTAACATGGAACTAACTACTGACGGTCTAGACCATGTGTATGAAATAGTGACTTGTGTGTTTCAATACTTGGAAATGCTAAGAAGGCAAGAACCCCAGGAGTGGATATTTAAAGAGTGTCAGGCTCTTAGTGAAGTCAGGTTTCAATTTAAGGACAAGGAAAATCCCAGATCCTATGTCTGTTCAACAGCTCGCTGTTTGCATGAGTTTGGAGTGGAAGATGTTATTCAAGGTCAATTTATAATGAGGCATTTTAAGTCTGATTTGATTAAAATGATTCTTTCATATCTGGTACCATCAAAAGTCAGAATAACATTGATTGCAAAATGTTTTGAAGGCAAAACTGATCTTGTAGAAGAGTGGTATGGAACAGAATATTCTGTGAACAAAATCCCTCAAAACTACATTGAGGAATGGGAGAATGTGCCATTGAATCCCTCCTTGCATCTTCCTGAGGAAAACGAGTTCATTCCTACAGATTTTACAATACGAGAAAGACCTCATGAATCTTTATCGATTCCTACTCTTATAAAGGATAACTCACTGTTGAAAGTCTGGTTTAAACAAGATGACACGTTCTTCTTGCCCAAGGCTTGTCTTCTCTTTGAAATTACAAGTCCATTGGCGTACGTGGATCCAGTTCACTGTAATATGGCTCACTTGTTTGTGGAACTTCTCAAGGATTCCCTTAACGAGTACGCTTATGCAGCCGAAATAGCTGGAGTGAACTACAAACTGGAGAATACTATGTATGGCATTTATATGAGCATCAAGGGGTATAACCACAAGCAGCCGGTTTTATTGAAGAAGATCTTTGAGAGAATGGCAAACTTTCAAGTGGATCCAAAGAGATTTCCACTTATCAAAGAAAGGTGCGGCATCGCCTTGAAGAACTTTGTTGCCGAGCCTCCTCATCAGCATGCTTTGTACTACACGTCATTTCTGTTAGAGGAACTGGCCTGGCACAAGGACGAACTTTTGGAAGCATTAGAAGAGGTAACCCTGGAGAAGCTAGTGGCTTTCATCCCTGATTTATTAGGAAGACTTCATATTGAGTGTTTGTTTCATGGAAACTTGACCAAAGAGGTGAGTGGAACATATTATGATCTTAAATAG

Transcript

evm.model.contig_39648.5

ATGGATGGGGTAAAGAAAGTTTATAACGAAGTTCCAAAGTCACCCCGTGATGATCGGCTCTATCGTGGTTTAGAACTGAACAACAATATGAGTGTTCTTGTGATCAGTGATCCCTTGACTGATAAATCCGCCGCGGCTTTGGATGTACACATCGGTAGCATGAGTGATCCAGCTGAACTACCAGGTCTTGCTCATTTTTGTGAACACATGCTGTTTCTAGGCACAGAAAAGTATCCATCAGAGAATTCATTCACTCAGtttttAAGTGAGAATGGTGGATCATCTAATGCTTTCACTGGTGGAGAACACACAAACTTTTACTTTGATGTCAAACATGAGTGTTTACACGAAGCATTGGATAGatacaGTAAtgcgtatgcaaaaaaccctgtatttgttgtcacgtcagcacatgactgcaaagacggagtcttgtcttgtcttgtcttgtcttgtcttgtcttggcttgtcttgccgaacgtgatcaaAATGCATGCcaggaaggttctgttacaccttgtgcgtgggtaaacatggaggatgatggaagaaaaattttGTTTGCACAGTTCTTCCTTTGCCCATTGTTTAATTCAGATGCAACAGACAGAGAGGTTAATGCTGTTGAATCAGAACACCATAAGAATATCTTGTCTGATTCTTGGAGGCTGAATCAGTTGGACAAATCTTCAGTCAATCCATCTCATCCTTACAGTAAATTTGGATCAGGTAACAAGCTTACTCTTGAAACCAGACCAAAGGAAAAAGGCCTCAGTGTTCGTGATGAACTACTCAAATTTCACAGTTCATCCTACTCTGCCAATATCATGGCATTGGCTGTCCTGGGCAGAGaatcaCTTGATGACTTGACAAACATGGTAATAAAGCTGTTTTCAGATGCTCAGGATAAAACTGTCACCATTCCTGAGTTTCCTGATCACCCTTATAGTGATGAACATTTGCAGGTAGAATTTAAAGTAGTGCCaatcaaagaaataaaacaccTAAATGTTTCATTCCCCATCCCTGATGTTAACCCACACTATGATAGTAAGCCTTGTCATTATATATCTCACCTTCTTGGCCATGAGGGTAAAGGAAGTTTACTTTCAGAACTCAAAACAAGAGGCTGGGTGAATGAACTTGTTGCAGGAGGAGCTAGTGGAGCAAAAGGGTTTATGTTCTTCATCTGTAACATGGAACTAACTACTGACGGTCTAgaccATGTGTATGAAATAGTGACTTGTGTGTTTCAATACTTGGAAATGCTAAGAAGGCAAGAACCCCAGGAGTGGATATTTAAAGAGTGTCAGGCTCTTAGTGAAGTCAGGTTTCAATTTAAGGACAAGGAAAATCCCAGATCCTATGTCTGTTCAACAGCTCGCTGTTTGCATGAGTTTGGAGTGGAAGATGTTATTCAAGGTCAATTTATAATGAGGCATTTTAAGTCTGATTTGATTAAAATGATTCTTTCATATCTGGTACCATCAAAAGTCAGAATAACATTGattgcaaaatgttttgaaggCAAAACTGATCTTGTAGAAGAGTGGTATGGAACAGAATATTCTGTGAACAAAATCCCTCAAAACTACATTGAGGAATGGGAGAATGTGCCATTGAATCCCTCCTTGCATCTTCCTGAGGAAAACGAGTTCATtcctacagattttacaatacgaGAAAGACCTCATGAATCTTTATCGATTCCTACTCTTATAAAGGATAACTCACTGTTGAAAGTCTGGTTTAAACAAGATGACACGTTCTTCTTGCCCAAGGCTTGTCTTCTCTTTGAAATTACAAGTCCATTGGCGTACGTGGATCCAGTTCACTGTAATATGGCTCACTTGTTTGTGGAACTTCTCAAGGATTCCCTTAACGAGTACGCTTATGCAGCCGAAATAGCTGGAGTGAACTACAAACTGGAGAATACTATGTATGGCATTTATATGAGCATCAAGGGGTATAACCACAAGCAGCCGGTTTTATTGAAGAAGATCTTTGAGAGAATGGCAAACTTTCAAGTGGATCCAAAGAGATTTCCACTTATCAAAGAAAGGTGCGGCATCGCCTTGAAGAACTTTGTTGCCGAGCCTCCTCATCAGCATGCTTTGTACTACACGTCATTTCTGTTAGAGGAACTGGCCTGGCACAAGGACGAACTTTTGGAAGCATTAGAAGAGGTAACCCTGGAGAAGCTAGTGGCTTTCATCCCTGATTTATTAGGAAGACTTCATATTGAGTGTTTGTTTCATGGAAACTTGACCAAAGAGGTGAGTGGAACATATTATGATcttaaatag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05193 all species →	Peptidase_M16_C	Peptidase M16 inactive domain	Domain	Interproscan
PF16187 all species →	Peptidase_M16_M	Middle or third domain of peptidase_M16	Family	Interproscan
PF00675 all species →	Peptidase_M16	Insulinase (Peptidase family M16)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011249 all species →	Homologous_superfamily	Metalloenzyme, LuxS/M16 peptidase-like	Interproscan
IPR050626 all species →	Family	Peptidase M16	Interproscan
IPR007863 all species →	Domain	Peptidase M16, C-terminal	Interproscan
IPR032632 all species →	Domain	Peptidase M16, middle/third domain	Interproscan
IPR001431 all species →	Binding_site	Peptidase M16, zinc-binding site	Interproscan
IPR011765 all species →	Domain	Peptidase M16, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43690 all species →	NARDILYSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0043171 all species →	Biological Process	peptide catabolic process	Interproscan
GO:0051603 all species →	Biological Process	proteolysis involved in protein catabolic process	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_39648.5.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.