Gene detail

Detailed information of evm.model.contig_40400.3 in Platygyra sinensis

Genomic Location: contig_40400:44150...52593
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_40400.3

ATGGGGCCCCGAGATACCTACGGGATGAGACTGCTTCAGACACTGATTCTTCTGAGTGTGCGTTTTCAGCTTTCATTTGGAGAGTTACCATTGGGGTCCCAAGATTCCTACGATAGGAAAATCTTCTTTGACAACGAGGGCTATGATTGTTTGAAGCGCGTTTATAATTATGGCGAGTTCCCCATTGTCACCTACGATAAGACTTTTACACCCAACCAAGAAAGAGAAGTTCTCTTCGACATTTACAAAGCAACAAATGGCAAGCAGTGGTACAACAAGGCCGCGTGGAATAGTTCAACAACTCACTGTGCTTGGTATGGCATCACCTGTCACAACAACACATACGTTAAAACTATCGTGTTGGCTTACAACAACTTGGATGGTTCTCTTCCTTCAAATTTGTGGAAGATCCGGAACTTGATGGCATTTTGCACTCCTGGTAATCCAAGACTGAGGGGACGTATTGGTGACTTTTTGTTTGGAAATATGAGCAAACTGCTCACCGTGGTGCTCAACGCAGCCTCTATCTCAGGAGACATTCCCCAAGATATCGCCAAGCTGACTTATCTACAGAATTTCCTGGGTTGTACCATGCGCGGTGATGGGTTCACTGGTCGTTTGCCAGACAACATAGGAAACATGACAGAGCTAAGATTACTTTGTCTTGGAGGCAATAGGCTAACCGGACAAATTCCAAGAGGCATTTCTAGATTAAACAAGCTCTATTATCTGGACCTACGAAACACACCTGGTATGATGCATGGCCATCTAAGTGACTTATTTTCGATTTCTTCGCTACAAATTTTGTCGGTGTCTGGGGTCAAATTAATTGGCGAAATGCCTCCAAAGCTGCCAGAAAATTTAGAAATTCTCGTTCTTCCTGGTAACAGTATTTCGGGCAAATTTCCTCAAACGATTCCGGAAAATAGCAGACTCACAGAGCTAAACGTGGCAAACAATGAACTGACAGGGGATATACCAGGTCAGTTGCTTCTTTTGCCACATATCAAAACGATCGATTTATCGCAAAATAAGTTTACTTCAATTAACAAAGGGAAGCCGTGGTCAAAAAATGTCAGCGCAGGAGCTAAATCGTACGTTTCTCTGGCGGGAAATAGAAACTTGAACATTGAATTAGCAAGCTTTATGGACATCTTCGGAGGAGGTCCATTAGTTTTAAATTTGAGCGATTGCGACATATTTAGTCCTTTGCCCGCAAGAGTGTTCTACTTTGAAATGACAACCTGCGATTTACATAAAAACAAGTTCTACGGGGAGATACCGGATATTTTTGGGGACACGTCCATCTTGACTTATTTTGACATCTCCTCGAATAACCTTTCAGGAAGTCTTCCACTAGGGATCCAAACTCTCATCTCCTTACAATTTTTGGATATTTCTGGAAATCCTTTTATGCGAGAAGCAACTAGGGCATCGTCGATCGTCTTTCGTCCTGACTTTACAAGAATGTTTACACCAACTGACGGAGATAACTTTACTTGTCCTGAAGGACGGCTTACAATAAATAATGGCCGCATTCGTCTGGATCCAACATTTTACGATTACAAACATTGCGTCTGCGATACAGGTTTCTACGGAGATAGCGCGTTGTGCAAGAAATGCATGGATGGTGGGACGTGCCCTCAGTTTGGCTTCACTGAATCTAATTATGTCCACCCAAACATCATGACATTACAAAGTGGCTACTGGCCATCGCCCACTCCTAACAGTGCCACCCATCTGGTCAAGTGCCCAGTGTCAACTACATGTAACCCATCAGCTTCCTGCACATGTCGACTCGAAACAACAACAAAATACACAAACTCCTCCCACCACAGACCTTCAGTATCATCACTGAACACAACATGTAATCACTCCTGCATCTGTCATCAAGGAAACACAGACAGGTTTTGCTCTCGTTGTCAAGACGGATTTTACAAACTTGGTGGACTGTGCTTTAAATGTGTAAAGGCCGACCAAATTTACTACTATTTGTTTATTCCTTCCTTTGCTATTTCATTCCTTGCTCTACTTTGGTCATATTTTTACTTTAAGCTGAAACCAATCAAATGGTTTGCAGTTACTGCAGCTCATTTCCTTTTAATGTTAACATTCATGTTGTTGGAATTACTGCCAGCCTGGGTTTTCAAATTAAATCTGGTGGTCTTTGTGCTGTGTATGACCAGTAGAGGAAAAAAAGCCCAATCTCTCATTAGCATCACAGTGTTTTATATCCAAACCATGGATTTTATGATATCCAGTGTCAATGTTTGGCCTAAAAAAGTCGTAGTGGCTCAGACGTACTTGAGTAGCTACTGGAACCTTTATTTCCCTTCGCTTTCCTGCGACCTGCCTTCCTTTTTCACTCCCGTTGGTAAGTTTGCTTTTCTGCTTCTTCTTCCAGTTGCCTGCATGGCAATGATAGGTTTGTATTTCATCATCTTGATGACTTACGACAGTTTCCGTCCACACCAGCGACGCATGCAAAACGTTCATTTCAAATGTCGTCAAAGTGCCTTCTTTTGCCTTAACTTCAGCTACTTTCCTATTGTAAAGCAAACTCTCTCCATTTTACGCCCATGTCACAATGACCGTGATGTTCTTTACATGCCAAACTTTCCCTGGATTGAATGCAGCTCTCACACTTATAAAACACTATCAGCCCTTGGTGGCGTCTCTGTTGTGTTTTATCTCATTGGGTTTCCCTTGCTTCTCATTTATCTCATGTTTGTTTTCTTTCGAAAGAGAGAATCCATGACCCCTGAAGATCGCCAGAAACTTGATGCTTGGCTTGGTCCTGTCTATTTACCCTACAAACCAAAGTACCAGCTCTTCTTTGAGATTTTCATGCTTCTTCGACGCTTGCTTCTCGCCGTAGCGTTGTCTATGATTTCTTCTTCCTCTTCTTTGCAAACGTTTGTTGTTTGGCTGATACTTATGGTTTCAGCCATTCTTTACTTACGTTTAGAGCCCTATAACAAACGACCCATTAACCGATGGGCCCAAGAGAATGTTTTCGAGCCCCTGGTGTTGTTCGTGTTGTCCATGTCTTTTATTCTGGTGAGGTTTTCGGCTTTGGACAGCTCCAACACAGTTGCATTCGTCTGGGTTGTGATGTTTGTCAATTCATGCGTCCTGGTCGTTCTAGTGGGTGTTATTTTGTATCTTCTTGTTGTCACTGGTAACAGTCGCGACAATGGCGATTTGGCTAGAACTGGAAATAATGGATGTGAGGAGAGTGCTAGAGAAGATGAAAGCAATAACGATGACGATAGAAGCTGCTTGCTGCCTGTTAACGAGCACCCGGGTAACGTGTCCATGGATGACGCTACCTGA

Transcript

evm.model.contig_40400.3

ATGGGGCCCCGAGATACCTACGGGATGAGACTGCTTCAGACACTGATTCTTCTGAGTGTGCGTTTTCAGCTTTCATTTGGAGAGTTACCATTGGGGTCCCAAGATTCCTACGATAGGAAAATCTTCTTTGACAACGAGGGCTATGATTGTTTGAAGCGCGTTTATAATTATGGCGAGTTCCCCATTGTCACCTACGATAAGACTTTTACACCCAACCAAGAAAGAGAAGTTCTCTTCGACATTTACAAAGCAACAAATGGCAAGCAGTGGTACAACAAGGCCGCGTGGAATAGTTCAACAACTCACTGTGCTTGGTATGGCATCACCTGTCACAACAACACATACGTTAAAACTATCGTGTTGGCTTACAACAACTTGGATGGTTCTCTTCCTTCAAATTTGTGGAAGATCCGGAACTTGATGGCATTTTGCACTCCTGGTAATCCAAGACTGAGGGGACGTATTGGTGACTTTTTGTTTGGAAATATGAGCAAACTGCTCACCGTGGTGCTCAACGCAGCCTCTATCTCAGGAGACATTCCCCAAGATATCGCCAAGCTGACTTATCTACAGAATTTCCTGGGTTGTACCATGCGCGGTGATGGGTTCACTGGTCGTTTGCCAGACAACATAGGAAACATGACAGAGCTAAGATTACTTTGTCTTGGAGGCAATAGGCTAACCGGACAAATTCCAAGAGGCATTTCTAGATTAAACAAGCTCTATTATCTGGACCTACGAAACACACCTGGTATGATGCATGGCCATCTAAGTGACTTATTTTCGATTTCTTCGCTACAAATTTTGTCGGTGTCTGGGGTCAAATTAATTGGCGAAATGCCTCCAAAGCTGCCAGAAAATTTAGAAATTCTCGTTCTTCCTGGTAACAGTATTTCGGGCAAATTTCCTCAAACGATTCCGGAAAATAGCAGACTCACAGAGCTAAACGTGGCAAACAATGAACTGACAGGGGATATACCAGGTCAGTTGCTTCTTTTGCCACATATCAAAACGAtcgatttatcgcaaaataagTTTACTTCAATTAACAAAGGGAAGCCGTGGTCAAAAAATGTCAGCGCAGGAGCTAAATCGTACGTTTCTCTGGCGGGAAATAGAAACTTGAACATTGAATTAGCAAGCTTTATGGACATCTTCGGAGGAGGTCCATTAGTTTTAAATTTGAGCGATTGCGACATATTTAGTCCTTTGCCCGCAAGAGTGTTCTACTTTGAAATGACAACCTGCGATTTACATAAAAACAAGTTCTACGGGGAGATACCGGATATTTTTGGGGACACGTCCATCTTGACTTATTTTGACATCTCCTCGAATAACCTTTCAGGAAGTCTTCCACTAGGGATCCAAACTCTCATCTCCTTACAATTTTTGGATATTTCTGGAAATCCTTTTATGCGAGAAGCAACTAGGGCATCGTCGATCGTCTTTCGTCCTGACTTTACAAGAATGTTTACACCAACTGACGGAGATAACTTTACTTGTCCTGAAGGACGGCTTACAATAAATAATGGCCGCATTCGTCTGGATCCAACATTTTACGATTACAAACATTGCGTCTGCGATACAGGTTTCTACGGAGATAGCGCGTTGTGCAAGAAATGCATGGATGGTGGGACGTGCCCTCAGTTTGGCTTCACTGAATCTAATTATGTCCACCCAAACATCATGACATTACAAAGTGGCTACTGGCCATCGCCCACTCCTAACAGTGCCACCCATCTGGTCAAGTGCCCAGTGTCAACTACATGTAACCCATCAGCTTCCTGCACATGTCGActcgaaacaacaacaaaatacacaAACTCCTCCCACCACAGACCTTCAGTATCATCACTGAACACAACATGTAATCACTCCTGCATCTGTCATCAAGGAAACACAGACAGGTTTTGCTCTCGTTGTCAAGACGGATTTTACAAACTTGGTGGACTGTGCTTTAAATGTGTAAAGGCCGACCAAATTTACTACTATTTGTTTATTCCTTCCTTTGCTATTTCATTCCTTGCTCTACTTTGGTCATATTTTTACTTTAAGCTGAAACCAATCAAATGGTTTGCAGTTACTGCAGCTCATTTCCTTTTAATGTTAACATTCATGTTGTTGGAATTACTGCCAGCCTGGGTTTTCAAATTAAATCTGGTGGTCTTTGTGCTGTGTATGACCAGTAGAGGAAAAAAAGCCCAATCTCTCATTAGCATCACAGTGTTTTATATCCAAACCATGGATTTTATGATATCCAGTGTCAATGTTTGGCCTAAAAAAGTCGTAGTGGCTCAGACGTACTTGAGTAGCTACTGGAACCTTTATTTCCCTTCGCTTTCCTGCGACCTGCCTTCCTTTTTCACTCCCGTTGGTAAGTTTGcttttctgcttcttcttcCAGTTGCCTGCATGGCAATGATAGGTTTGTATTTCATCATCTTGATGACTTACGACAGTTTCCGTCCACACCAGCGACGCATGCAAAACGTTCATTTCAAATGTCGTCAAAGTGCCTTCTTTTGCCTTAACTTCAGCTACTTTCCTATTGTAAAGCAAACTCTCTCCATTTTACGCCCATGTCACAATGACCGTGATGTTCTTTACATGCCAAACTTTCCCTGGATTGAATGCAGCTCTCACACTTATAAAACACTATCAGCCCTTGGTGGCGTCTCTGTTGTGTTTTATCTCATTGGGTTTCCCTTGCTTCTCATTTATCtcatgtttgttttctttcgaaaGAGAGAATCCATGACCCCTGAAGATCGCCAGAAACTTGATGCTTGGCTTGGTCCTGTCTATTTACCCTACAAACCAAAGTACCAGCTCTTCTTTGAGATTTTCATGCTTCTTCGACGCTTGCTTCTCGCCGTAGCGTTGTCTATgatttcttcttcctcttctttgcAAACGTTTGTTGTTTGGCTGATACTTATGGTTTCAGCCATTCTTTACTTACGTTTAGAGCCCTATAACAAACGACCCATTAACCGATGGGCCCAAGAGAATGTTTTCGAGCCCCTGGTGTTGTTCGTGTTGTCCATGTCTTTTATTCTGGTGAGGTTTTCGGCTTTGGACAGCTCCAACACAGTTGCATTCGTCTGGGTTGTGATGTTTGTCAATTCATGCGTCCTGGTCGTTCTAGTGGGTGTTATTTTGTATCTTCTTGTTGTCACTGGTAACAGTCGCGACAATGGCGATTTGGCTAGAACTGGAAATAATGGATGTGAGGAGAGTGCTAGAGAAGATGAAAGCAATAACGATGACGATAGAAGCTGCTTGCTGCCTGTTAACGAGCACCCGGGTAACGTGTCCATGGATGACGCTACCTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08263 all species →	LRRNT_2	Leucine rich repeat N-terminal domain	Family	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00560 all species →	LRR_1	Leucine Rich Repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052941 all species →	Family	Stomatal Development and Plant Interaction Regulator	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR013210 all species →	Domain	Leucine-rich repeat-containing N-terminal, plant-type	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR002049 all species →	Domain	Laminin-type EGF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48004 all species →	OS01G0149700 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_40400.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.