Gene detail

Detailed information of evm.model.contig_41419.2 in Platygyra sinensis

Genomic Location: contig_41419:31679...38637
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_41419.2

ATGGAAGAAACAGAAGGAAATCGAAAAGATGCTTCATCTGTCACTGACGCGAAGTGTCGAATACAGTCTTCCTGTTTCCCGTCAAGTTGTCGCCGCACAGATCCTATGAGAGTAGATCCAGACTCAAACATCACTCTTAACTGCTCCATCATCACAGCAGGACTGGAACTAGGCATGACCTGGAGACAAGCGAAGAAAAAAATACACAACAATACTGGTTCACCAGACTTGGTATTGCTGCAATTAAATTCAACAAAGTACAGCAACACTATGTCATGTGACTGTACCAACATACACTTCACACGTGCTCCAAAAGTTGTTTGGACCTCGGCGACTCCAAGTTTTATCATCAAAGGCAAAAAACCAGAGGATTTGGAATGCTTTTTCTCGGGATGGCCTCTCGATTTTGAAGTCTACTGGTACAAGGATGACAAAAAAATTATAAATGGAACTGAAGGCATTTATCATTCAGAGGACAGGAGACGGAAAAATGGAGAGGAAACTCTTCATAGCAGACTTAGCCTTCCTCCAGGACGTGAAGAGCTGGAAGGAATCTATACGTGCAGTGCGAAAAACAAGATTTCTGATCGACAGGCGTCTGACTCTTTGCAGTATATATTTATGTGTCCAAAGCCAAAAGGTCCAACCATTGTCTCTGATCCAGAGGTTCTTGCAAGGACTTTCTCTACTGTTAATCTGACATGCTTGTCCGATGTAAATATCAATTGTCCAGCACAACTGATTTGGCGCAATGACGCTGCGCCCTTGGAAAGTGGTACAAAGTTTAAAATAAAACAGAAGAAAATGCGCAGATGTAAAGTACAATCTATACTCTATATTGTTAACGTAACGGAAGATGACGAGGGAAAATACAGCTGCAACTGGAACTGTAACAGCCGCGTAGCTGCCGTTAACTTGAAAGTGTTTTCTCAATCACAAACGGGGTCTGTAATAAAGCTAACGGAGGAGGATATTCCAGGTGCATCCCTGGCAGGGAGGCTGCCGTCGCAGCTAAAAATTGACGAGCTAAAATTTTGGCTTCTATGTCGCGGTGATTCCTGCAAAGGACTCAAAACAAAGGCAGAATTCGTGAAAAGGTTGGAGGAATATATTTCAAGTGGCCGTGACAAGAACATCATCGACCCAGATCGGGATCAGATATATACGAAGAGAAAAGAAAGGCAAGAGAGTTATTTGCACTGCGGGGCTGCATCTTCAATTCAGCCAATAAAGTTTCCTACCGATGGCTGGTCTTCAAGCCTGTTACGTATGCCCATGTTTACCCGTGCTGAAATGAATATGCACATATCAAAATCTGGAAAACACGTCGATCCACATAGTAAGTCACACTCAGTGCCGACTAGCATGAGAAAGGCAAAAACATTTTTGGAAGATGAATATTTAAACGATTTATCGGTCGCAAGTGATCAAGTGCACTTCTTTTTCAAGTCTAAATGTCATCATAGTTTTAGGAAGAACGATCCACCGCACAATTTAAAAGTGGCGCTAGATTTGGTTTCTGGAGAAGTTAAAAACGCTTCATGTTCATGTGTTGCCGGACATATTGGATTTTGTAATCATACTCTGGCTTTGCTTATGAAAATATGCAAATTGAGTCTTTATGGCTGCAAAGATGTCAGTGAACTTGAAGAGGATGATGACATGCAACCTACGAAGGCCTGCACCTCAACTCTTCAGTTATGGCACAGAAAGGGAAGAGGTGATGCAGTTTATCCCCAGCCTGTTATGGAAATTTTAGTGAAAAAAACAAAGCTCGATGATAACTCACAGTCCTCCAAAGAGCCCGGATTAAATCGTCTTCTGTATGAAGCCTGGATTAAATTGTCTTCTGTATGTGCCATAACTGAAGAGTTGAGAAATAACTTGCGGACTCAGTATGTTGACGAGGCTAAATTCAAAGAGAAACTTCTCCAGATTAATCCTGCAATGCCACTGGCACAGATTCTGGCTCCAAGAACAAGTGACAAAGACAGAATTGAAACTAGATTTGGCAGATTTCAACCAGGATCTTATGGAAGCTACCAGCTATCTTTCACTGAAGCCAATTTTCAAGTATTTTGTGACATAAATTCAATGCCTAGAATTGGTCCAAGTGAAGAAACACCTATTTGCTCAGATTTTCCACAGCTTCCTATTGATGATGTATAA

Transcript

evm.model.contig_41419.2

ATGGAAGAAACAGAAGGAAATCGAAAAGATGCTTCATCTGTCACTGACGCGAAGTGTCGAATACAGTCTTCCTGTTTCCCGTCAAGTTGTCGCCGCACAGATCCTATGAGAGTAGATCCAGACTCAAACATCACTCTTAACTGCTCCATCATCACAGCAGGACTGGAACTAGGCATGACCTGGAGACAAGcgaagaaaaaaatacacaacAATACTGGTTCACCAGACTTGGTattgctgcaattaaattcaACAAAGTACAGCAACACTATGTCATGTGACTGTACCAACATACACTTCACACGTGCTCCAAAAGTTGTTTGGACCTCGGCGACTCCAAGTTTTATCATCAAAGGCAAAAAACCAGAGGATTTGGAATGCTTTTTCTCGGGATGGCCTCTCGATTTTGAAGTCTACTGGTACAAGgatgacaaaaaaattataaatggAACTGAAGGCATTTATCATTCAGAGGACAGGAGACGGAAAAATGGAGAGGAAACTCTTCATAGCAGACTTAGCCTTCCTCCAGGACGTGAAGAGCTGGAAGGAATCTATACGTGCAGTGCGAAAAACAAGATTTCTGATCGACAGGCGTCTGACTCTTTGCAGTATATATTTATGTGTCCAAAGCCAAAAGGTCCAACCATTGTCTCTGATCCAGAGGTTCTTGCAAGGACTTTCTCTACTGTTAATCTGACATGCTTGTCCGATGTAAATATCAATTGTCCAGCACAACTGATTTGGCGCAATGACGCTGCGCCCTTGGAAAGTGGtacaaagtttaaaataaaacagaagaAAATGCGCAGATGTAAAGTACAATCTATACTCTATATTGTTAACGTAACGGAAGATGACGAGGGAAAATACAGCTGCAACTGGAACTGTAACAGCCGCGTAGCTGCCGTTAACTTGAAAGTGTTTTCTCAATCACAAACGGGGTCTGTAATAAAGCTAACGGAGGAGGATATTCCAGGTGCATCCCTGGCAGGGAGGCTGCCGTCGCAGCTAAAAATTGACGAGCTAAAATTTTGGCTTCTATGTCGCGGTGATTCCTGCAAAGGACTCAAAACAAAGGCAGAATTCGTGAAAAGGTTGGAGGAATATATTTCAAGTGGCCGTGACAAGAACATCATCGACCCAGATCGGGATCAGATATATACGAAGAGAAAAGAAAGGCAAGAGAGTTATTTGCACTGCGGGGCTGCATCTTCAATTCAGCCAATAAAGTTTCCTACCGATGGCTGGTCTTCAAGCCTGTTACGTATGCCCATGTTTACCCGTGCTGAAATGAATATGCACATATCAAAATCTGGAAAACACGTCGATCCACATAGTAAGTCACACTCAGTGCCGACTAGCATGAGAaaggcaaaaacatttttggaagaTGAATATTTAAACGATTTATCGGTCGCAAGTGATCAAGTGCACTTCTTTTTCAAGTCTAAATGTCATCATAGTTTTAGGAAGAACGATCCACCGCACAATTTAAAAGTGGCGCTAGATTTGGTTTCTGGAGAAGTTAAAAACGCTTCATGTTCATGTGTTGCCGGACATATTGGATTTTGTAATCATACTCTGGCTTTGCTtatgaaaatatgcaaattgagTCTTTATGGCTGCAAAGATGTCAGTGAACTTGAAGAGGATGATGACATGCAACCTACGAAGGCCTGCACCTCAACTCTTCAGTTATGGCACAGAAAGGGAAGAGGTGATGCAGTTTATCCCCAGCCTGTTATGGaaattttagtgaaaaaaacaAAGCTCGATGATAACTCACAGTCCTCCAAAGAGCCCGGATTAAATCGTCTTCTGTATGAAGCCTGGATTAAATTGTCTTCTGTATGTGCCATAACTGAAGAGTTGAGaaaTAACTTGCGGACTCAGTATGTTGACGAGGCTAAATTCAAAGAGAAACTTCTCCAGATTAATCCTGCAATGCCACTGGCACAGATTCTGGCTCCAAGAACAAGTGACAAAGACAGAATTGAAACTAGATTTGGCAGATTTCAACCAGGATCTTATGGAAGCTACCAGCTATCTTTCACTGAAGCCAATTTTCAAGTATTTTGTGACATAAATTCAATGCCTAGAATTGGTCCAAGTGAAGAAACACCTATTTGCTCAGATTTTCCACAGCTTCCTATTGATGATGTATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00047 all species →	ig	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013151 all species →	Domain	Immunoglobulin	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR007527 all species →	Domain	Zinc finger, SWIM-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45889 all species →	IG-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_41419.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.