Gene detail

Detailed information of evm.model.contig_41963.1 in Platygyra sinensis

Genomic Location: contig_41963:173...5584
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_41963.1

ATGTTGCTATCATCACTGGATCACGAGGCTGCACCTCTTCGCATATTGACAATCCGTGCATTGGACAGTGATCCTGACGGTCATGCACGCTACAATGATTTCTACCTGCACGTGCATGTTGATGATGTGAACGACAATACTCCGGAGTTTGCTGACAGCTTAGTCACTGTACTCGTACCAGAGACACTGTCAAGGAAAGGCGCTGCAAAGATCCAGGCCTCTGATCGTGACTCGGGTGAAAACGGCCGTGTGACTTACTTCATCGTCTCTGGAAACTCGGACGGGTATTTCAGTCTGAACTCCAACACTGGTGAACTGACAACACTAAAGAGCCTCGATCTAGAGTCCGCTCAAGCCCCTTACCCAAACTTCACGGTTGTGGTTGTAGCAAAGGATCATGGAGATCCTCAGTTGTCTAGTAATGCAACATATGTGTTGATGATTAGCAGCGTGAATGAATTCACGCCACAATTCACAAGTCCCGGGCTCTCCTTACCGATACAGGAAGATACTGCTGTGGGAACCATGCTGTGTCACTTGACGGCCACAGATGCGGACTTTGGTCCCGATGGATTGGTCAAACGTTTTCGTATTGAGCCAACTTCCGGAAAGATATACATTCACGCGCCACTGGATAGAGAGACGAAATGGAGATACAGCCTGAAAGTAAAGGCCTTTGATCGGCCCTTTCGAGCAGCCAATCAGAGGTCATCTGTTATCTTTGTGAATGTGACACTGACGGATGTTAATGATAACAAACCAGTCTTCAATAAAGGGTCTTATTACGCCGCTGTCATGGAGACTGCAAGCATCGGTGATGACGTTATTACGGTGCAGGCAGCTGATGCTGATGCAGGAGTAAATGGCCAAGTTCAATACAAAATCAAGTCTGGAAACAGTCATGGGTTCTTTGACAGCGACCCTAGCACTGGAACAGTACGAGTTAAAAAGAGCCTCGATCTTGAATCACAGCAACACGTGGATGATTTACTGTACACCGTGACATTTGAAGCATCGGATCGAGGTCGAGTATCGCTTAGCAACTATGTGCTAGTTACCATAGAAATAAAGAGTGTCAACGAGTTCCCGCCAAAGCTGCAACATTCCGGAAGTATTTACGTGAAAATCCCAGAAGACACTGCCATTGGCGCTAGAGTCGCAGATATCAATGCTACTAATAAAGACTTTGGCCCAGATGGAATACTCACTTATTCCATAATTAATGGCAACGCAGACAATAATTTCGGTATCAACCCCAGTACCGGTATCATAACTGTTAAAAACGAGCTGGACTATGAAACTGTCGTGAGATACTCTCTTGTGATACGAGTAAGCGATAACGCTCCGCCTGCTCAGCGACTTTCTACTGTTACCAAGGTAACAGTTCGGTTGACGAACGTAAATGACAGCGGAGGTGTGGATGTGTTGATAGAGGATGTCCTCAGCAGAATAACGCCCCCAGGGGATCCTGCTGATGTCGCAGGGATACCAACGAGTAGCCCGATATCTGTGGTGTTGCTGTATGAAAATGGGAACATAGAAAAGCTGTCCTCTGATGACAGCAGACTGACATTTGACGACAAGTCCGAATCACGTGGACTTTTCACAGTTGTCCGAGCTGACGACAAGAAGATCATTAAAGCAAACGGCGCTGGATTAGTGGGTCAAGGTGTCCTTATTGTTCGTGTTCACAACGTTTACAATGTCCGCGTCACAGTAAATGTGGTGGGTTACTCTTCGCTACAGTTAACAGCTGTTCCATATCCAATCATCGAAGGATCGAATGCCACTCTGACATCATTGAAGCGCATAGGAAGTCAACATGGAAACGTCCAGTTGTCTGCTCTCAAGCTGTGCCTTGTATTGACGGATAAGTCCACTACCGATGTTTCCACGATGACGTCGACATCGTTTCGTGTCGTAAGCAGTGATGTAGGAGTTAAAGTTTCCGCGGGTCCCATTGCTAAGAACGTGCTGTTTGTAGATAGGACGAGCACAAGCGGGTACATAAGCTTTCGTGGACAGTTCTCCGGTAGAGAGTCAGGGGATGTTACTCTTGAAGTTTCAATAGAAGTACTAACAGTGAATAAAATCCTTGCCATGGAAATAATCGGTCTCCGGAATCAAACTCTTTTGGGTCCAGTGTTGTCCACGCAGGCCCAGGTTCAAGTAGACTTTGTTATGAATGATAGCTCTGTGCTTAGAGGTCTTGGAGTGACAAAGCATGTGCAATTGTATTGTAACACCGTCCCACCTGTGGGGGGTGTTGACATTGGACAGGTGTACGGCCCAGCAATACCAGCATTAACAGCTAATCAGAGAGTTACCCTCGCTGTGCGTGTGAATCCCGGGAAATCAAACCTTCTTGCCTTTGATTTGAAGATTTTGTACGATGATAGCCAAGTACGGTTTGTTAAACTGAAAAGAAGCAGTGCCTACTCCCACACTAAAGGACAATTGCATTTAGCTGATGTGACAAATCCCGATAATGGATGTCCGCAGGTTGCTGACTTGGTTTTCGAGTCATTAGTTGGTGGCGTGCTTAGCATCCAAGCCTCGGTGAACATGTTAATTGACGAAAGGCTAGGATTCATTGGAAACTTTGTACCAGTTGTAAAGTCGTGTAACGTGCTACCGTTGGGCGATACTAACGCGGATTGTGTGTTCGATATCCGGGACGCTGCTTTCACAATGGCATATAGTCTAGCACAAGAGAAGAATTTCGTCGGTGAATTTGAACAAACGATGTCAAAAAGCACGACTGATAAAATGCAACAAATTATGGACTTCAATCTCAATGGAGTTGTAGAACGAAATGACGCCTATCTGTTAGCTCGTGCCAATATGGACATGGTGCGATTCATTCGTTCCCTTCACGTGAACTTCCTCTATCACCAGAATAAATCAGCAAATTGCGCACTGGAAATAACAGCCAAGCTAAGTACAAGAGATGGAAAGATGGAAACAGATTCAAACACGAAAGTGTACCTCGAATTTGCCAGCCGGGAGAAGGTCTTAAGCTTGCAACTCATGGGCACCTCATTCGACACCGGAGAGCTGATCACAACTTACGATAACCAGAACGAATTATTTGAAGGCATCGTTAAGGCAGAGAGTCCAGGCGAAAGTTTTCATGTGGTGGCTAAAACTCCAAGATAG

Transcript

evm.model.contig_41963.1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028 all species →	Cadherin	Cadherin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR036439 all species →	Homologous_superfamily	Dockerin domain superfamily	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR020894 all species →	Conserved_site	Cadherin conserved site	Interproscan
IPR039808 all species →	Family	Cadherin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027 all species →	CADHERIN-23	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0000272 all species →	Biological Process	polysaccharide catabolic process	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0016342 all species →	Cellular Component	catenin complex	Interproscan
GO:0045296 all species →	Molecular Function	cadherin binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0098742 all species →	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_41963.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.