Gene detail

Detailed information of evm.model.contig_42333.2 in Platygyra sinensis

Genomic Location: contig_42333:19841...46034
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_42333.2

ATGGAAGGCCGCATGTTCTCTCTGATCGTTCTGTTTCATATCGCGCATGGATCAAGCTTTGGCAAAGGAAGGTCCCCAGGGTTTCTCATTGGAAAAGAAAACTCCACTGCTGGCCATGTGGCAGTAAACCCTCTGTTTACAGAAGAGCCAGATGACAAATTTGTCTTGCCAAATACTCCAGCGTCTTTGATCTGCGAGGCTAAATTTGTGTCAAAGCTCAAGTTCAACTGTTCTGGGAAACTGGTACCCAGAGAAGTATTAAATTATGAATTCATTGATGATAATGTGACATTTCTTCTTGCTGAGATCTCTCAAAGTCAAATCAAGAACAGAACTTCTGTTTTCCTCTGCAATTGTGTCGCCACAGGCTACAATGGACAAGTTATAAGAAGCCGTGCTGCATCTGTTCAGAGAGCTTATCTGGATGAGGACTTTGTCATTTCTCCATCGACCAACACCAGAGTTCAGAAAAATTCTTTGCTTACGTTAAGATGCAAGCCTCCAGTTGGAAACCCAAGCCCAGCTGTGTCTTGGTGGAAAGATGGTCACCCTGTGGATACACACAATAATAAAAGATTGTTGGTGAAAAGTGATACCAATTCCTCTCTTGTCATTATCAGGAAGGCAAAATTATCAGATGGTGGTGGCTACTCTTGTGTGGCGTCAAACCTTGTAGGAAGACGTGAGAGTGCCATTGTCAAGTTAAACGTTTATGTTGATGGTGGCTGGTCTGAGTGGGCAGAATTTGGACCCTGTGATGCTCCTAAATGTGGGAATGGAACAAAGACGTTCAAACGCGTCTGTTCGAATCCTGAGCCAGAGAACGGAGGGCAGTTCTGCACTGGAATCAGCGTTAAATATGAAAAATGCCAAGATGTTTGCCCAGATTTGGAAATAACATGCCCAAATGACATTGTTGTGTACATCAACCGGTCAGTTGCAGAATCTAAAAATGTCTCGTGGGATAAACCTCTTGTCCGCAACAAGAAAAATGACACAAAGTTTTCCGTTGAAGTTTTTCCACAATGGGCAGAACCACCTGTGATATTCCCAAAGGAAAGACCCATGTATGTTATAAAGTATATGGTGAAGAACGAGTTTGGCCAGACAGCAAGTTGCTTCTTCAACATAACTGTCTATAATGACTCTTCCAGAGCATGTGGAACAAGCGACTGCAATGTGCTGGTAACAAGCAAACCACAGGGTGAAACTCCAACCACAATTAAATCAGGTGTCCTTGTACTCTATTTGTCTGTGGGACTTGCCTTTGGGATACCGCTGTTGGCATTACTCTTTATGGCAAATTATATGTACCGTCGTAGGAAATTGAGCCAGAAGAGTGCAGCCACAAAACATTATGAAGGTGTAAAAGCTGAATCGGAACTTCAATTGAATGTTGTCACTCGGTCTGCATCTTATGCTGAGTCTGCAGTAGAATCTAGAAAGCTGAAGGTTGAATCTCCTATTGATTCTGAAGTGTTTGATTTCCCAGTCCAAGTATCATATTGGAAAGAACCTCCAAAGACACTGCATGTGGAAGTCGAAATCACAGATCAACAAAAGACGGAAAAGCCTCGTGACTATAAGAGGACAAATTCTTCCATCAGCAACAAGTCAACAGTGTCAGAAATCTCTCAAATGATGTGGAATTTATCCAACCTCCCAGAAAATGCTGATTCAAAAATGGTCGCATGGGGACTTGTGGATCACAATGGAGGGAAGTTTACTATAGGTAACACAGGTGTGAGCCTCACAGTACCTCCACTGGCTATTGCAGAAGGTCACACTGAAGGTATATATATAGCTATAGTGGACCAAGAAAAAGAACATCCTCAGATCACTTCCAAGGAGTCGTTGTTGAGCCCAGTAGTAAAATGTGGTCCAACAGGACTTAAGTTTCAGCGCCCTGTGATACTGAGCATGCCGCACTGTGCTCTTCTTGAAGAAGGAGCTTGGAATCTTAAAGTCCAGTATAATGAAAGCGAGCCCAGCACAGCTGCAGACTGGAAGCAGTTGATTGATGTCAATAGGCAGGATGGCTCTGAGCCTTCCCATGTTGTCGTGGAATCCAACATGGTTCATTTGATGGTGGATCACTTCACGTATTTTGCCCTGACTGGAGAATCGGCGGCTGATAAACAAGCCCCAAAAGATGTGCAAGTTCTGGCTTATGTCACGCCTCCTGAGGTCAATGGTGACTGTGTTGTAAGGGTGTATTGTGTTGGAGGCACGCCAGCAGCAGTAGAGGATGTACACAATCAAGAAACAAAGAAGTACAGAGGAGAATCGATCGACGCAGCTAAACAACTTCGCTTTAAGGATGGAGGAGGAGATCTGATAGTGCAACTCAAATCACTTCGCCCAGGCTGGACCAGCGAAGATGACGTCAATAAAATTCATTTCCGAGACATCTGGGAAGGTATTCAGCGCATGCCCAACTGCACTTTCGTGTTCTCTTTGTCCGACTCGAGTGTGGCGCACTTTCGTGCAAAATTTAAAGTAAGGCAGGATTGTGAAGATGGCGAGGAACGAGATGTCAATGTAGTAACGTCGGTCAAGCAAAGGCCTCGCGAAACTCAGACTCAAGTAGGGAGGCAACAGACCATTCTAACTCTAACCTCTCTTGTGCGTGTGAGCACTCGACAAGCTTGCCTAAGGCTCGCATGCTACAAAGCTCTGAATCGAAGAAAGCTAGCCATCCAGGTTGAGAGATCATGCTGTGGGGACCAGCCATGGACACATTGGAAGCCCAAGTGGAATGCTCAGGCTAACAAATTGACCCTGACCAGGGGAAGGGAGTGCACAGTTCAAGACAAGCTATGTACTTTTCTCCATGGTCCCATAGGGAGATTTTTGTACATGTCGCTGATGGAGCATTGTTATGACAAGACAATCAAGGCATCAACAAGATGTGTTTGCAAATGCGAGACTCTTCTAAATCCCAGCTTTCCTTTCATAAAGAGCGGACAAGGCAAAACACCTCAGTCAGGACAGCCTGCCATACAAAGTCAAAAAATCCCAGGCTACAATGAACACATGGCCACAAACCCAAAGCAGAGTTCAAGGGCAAAGGTCATGTTGGCAAACCAACCTGAGGGGACCCCGGGTGTTACAAGAAGTTTGGTTGACAAATTGCAGTCTAGTAACCCCGCAAGTCTTGATTTGCCAGCTTCACAAGATTTCCAAGCTGATTTCAACAGTTATTGTGTCAAGGATGAATGA

Transcript

evm.model.contig_42333.2

ATGGAAGGCCGCATGTTCTCTCTGATCGTTCTGTTTCATATCGCGCATGGATCAAGCTTTGGCAAAGGAAGGTCCCCAGGGTTTCTCATTGGAAAAGAAAACTCCAcTGCTGGCCATGTGGCAGTAAACCCTCTGTTTACAGAAGAGCCAGATGACAAATTTGTCTTGCCAAATACTCCAGCGTCTTTGATCTGCGAGGCTAAATTTGTGTCAAAGCTCAAGTTCAACTGTTCTGGGAAACTGGTACCCAGAGAAGTATTAAATTATGAATTCATTGATGATAATGTGACATTTCTTCTTGCTGAGATCTCTCAAAGTCAAATCAAGAACAGAACTTCTGTTTTCCTCTGCAATTGTGTCGCCACAGGCTACAATGGACAAGTTATAAGAAGCCGTGCTGCATCTGTTCAGAGAGCTTATCTGGATGAGGACTTTGTCATTTCTCCATCGACCAACACCAGAGTTCAGAAAAATTCTTTGCTTACGTTAAGATGCAAGCCTCCAGTTGGAAACCCAAGCCCAGCTGTGTCTTGGTGGAAAGATGGTCACCCTGTGGATACACACAATAATAAAAGATTGTTGGTGAAAAGTGATACCAATTCCTCTCTTGTCATTATCAGGAAGGCAAAATTATCAGATGGTGGTGGCTACTCTTGTGTGGCGTCAAACCTTGTAGGAAGACGTGAGAGTGCCATTGTCAAGTTAAACGTTTATGTTGATGGTGGCTGGTCTGAGTGGGCAGAATTTGGACCCTGTGATGCTCCTAAATGTGGGAATGGAACAAAGACGTTCAAACGCGTCTGTTCGAATCCTGAGCCAGAGAACGGAGGGCAGTTCTGCACTGGAATCAGCGTTAAATATGAAAAATGCCAAGATGTTTGCCCAGatttggaaataacatgcccaaATGACATTGTTGTGTACATCAACCGGTCAGTTGCAGAATCTAAAAATGTCTCGTGGGATAAACCTCTTGTCCGCAACAAGAAAAATGACACAAAGTTTTCCGTTGAAGTTTTTCCACAATGGGCAGAACCACCTGTGATATTCCCAAAGGAAAGACCCATGTATGTTATAAAGTATATGGTGAAGAACGAGTTTGGCCAGACAGCAAGTTGCTTCTTCAACATAACTGTCTATAATGACTCTTCCAGAGCATGTGGAACAAGCGACTGCAATGTGCTGGTAACAAGCAAACCACAGGGTGAAACTCCAACCACAATTAAATCAGGTGTCCTTGTACTCTATTTGTCTGTGGGACTTGCCTTTGGGATACCGCTGTTGGCATTACTCTTTATGGCAAATTATATGTACCGTCGTAGGAAATTGAGCCAGAAGAGTGCAGCCACAAAACATTATGAAGGTGTAAAAGCTGAATCGGAACTTCAATTGAATGTTGTCACTCGGTCTGCATCTTATGCTGAGTCTGCAGTAGAATCTAGAAAGCTGAAGGTTGAATCTCCTATTGATTCTGAAGTGTTTGATTTCCCAGTCCAAGTATCATATTGGAAAGAACCTCCAAAGACACTGCATGTGGAAGTCGAAATCACAGATCAACAAAAGACGGAAAAGCCTCGTGACTATAAGAGGACAAATTCTTCCATCAGCAACAAGTCAACAGTGTCAGAAATCTCTCAAATGATGTGGAATTTATCCAACCTCCCAGAAAATGCTGATTCAAAAATGGTCGCATGGGGACTTGTGGATCACAATGGAGGGAAGTTTACTATAGGTAACACAGGTGTGAGCCTCACAGTACCTCCACTGGCTATTGCAGAAGGTCACACTGAAGGTATATATATAGCTATAGTGGACCAAGAAAAAGAACATCCTCAGATCACTTCCAAGGAGTCGTTGTTGAGCCCAGTAGTAAAATGTGGTCCAACAGGACTTAAGTTTCAGCGCCCTGTGATACTGAGCATGCCGCACTGTGCTCTTCTTGAAGAAGGAGCTTGGAATCTTAAAGTCCAGTATAATGAAAGCGAGCCCAGCACAGCTGCAGACTGGAAGCAGTTGATTGATGTCAATAGGCAGGATGGCTCTGAGCCTTCCCATGTTGTCGTGGAATCCAACATGGTTCATTTGATGGTGGATCACTTCACGTATTTTGCCCTGACTGGAGAATCGGCGGCTGATAAACAAGCCCCAAAAGATGTGCAAGTTCTGGCTTATGTCACGCCTCCTGAGGTCAATGGTGACTGTGTTGTAAGGGTGTATTGTGTTGGAGGCACGCCAGCAGCAGTAGAGGATGTACACAATCAAGAAACAAAGAAGTACAGAGGAGAATCGATCGACGCAGCTAAACAACTTCGCTTTAAGGATGGAGGAGGAGATCTGATAGTGCAACTCAAATCACTTCGCCCAGGCTGGACCAGCGAAGATGACGTCAATAAAATTCATTTCCGAGACATCTGGGAAGGTATTCAGCGCATGCCCAACTGCACTTTCGTGTTCTCTTTGTCCGACTCGAGTGTGGCGCACTTTCGTGCAAAATTTAAAGTAAGGCAGGATTGTGAAGATGGCGAGGAACGAGATGTCAATGTAGTAACGTCGGTCAAGCAAAGGCCTCGCGAAACTCAGACTCAAGTAGGGAGGCAACAGACCATTCTAACTCTAACCTCTCTTGTGCGTGTGAGCACTCGACAAGCTTGCCTAAGGCTCGCATGCTACAAAGCTCTGAatcgaagaaagctagccatccAGGTTGAGAGATCATGCTGTGGGGACCAGCCATGGACACATTGGAAGCCCAAGTGGAATGCTCAggctaacaaattgaccctgaccaggggaAGGGAGTGCACAGTTCAAGACAAGCTATGTACTTTTCTCCATGGTCCCATAGGGAGATTTTTGTACATGTCGCTGATGGAGCATTGTTATGACAAGACAATCAAGGCATCAACAAGATGTGTTTGCAAATGCGAGACTCTTCTAAATCCCAGCTTTCCTTTCATAAAGAGCGGACAAGGCAAAACACCTCAGTCAGGACAGCCTGCCATACAAAGTCAAAAAATCCCAGGCTACAATGAACACATGGCCACAAACCCAAAGCAGAGTTCAAGGGCAAAGGTCATGTTGGCAAACCAACCTGAGGGGACCCCGGGTGTTACAAGAAGTTTGGTTGACAAATTGCAGTCTAGTAACCCCGCAAGTCTTGATTTGCCAGCTTCACAAGATTTCCAAGCTGATTTCAACAGTTATTGTGTCAAGGATGAATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00791 all species →	ZU5	ZU5 domain	Family	Interproscan
PF17217 all species →	UPA	UPA domain	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037936 all species →	Family	Netrin receptor UNC5	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR000906 all species →	Domain	ZU5 domain	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR033772 all species →	Domain	UPA domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR003410 all species →	Domain	HYR domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12582 all species →	NETRIN RECEPTOR UNC5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005042 all species →	Molecular Function	netrin receptor activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038007 all species →	Biological Process	netrin-activated signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_42333.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.