Gene detail

Detailed information of evm.model.contig_42474.1 in Platygyra sinensis

Genomic Location: contig_42474:9496...22916
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_42474.1

ATGGGGATGCAAAAGTTACTATCGATTGTCCATGTGGTTTTATGCGGTGCGGCGGCAATCGCTTTAGAAATAGACTTGTTGTCTCCAATCACCGAATCTCCCCTAAACTTCTACGTCAGACGTGTTTTGACGCCGAGCAGATCGAAAGCATACCTCTTTGGTCGATCAGTGAAGCTCATCCAGGCAGAAGAGGGTCTCCTTCAGAGAGTTATACTGAACATTGAATCGAACGAAGAATTCGTAATCAAATCAAAAATTCGTATCATTTCACCGCGACCCGGGACTTTGTTTTCTATTGCACATACTCAGAGGAAGCTGTTTCTTCTCGATTTGTCAAGCAAAGGAACAGGTGACAAGACGAGGCTGATTCTGAGATACAGATCAACTAATGACACTATGGAGACCATTGCGTTCAAAGATGTTGCACCTCTTGGTGACACTAAGAACTATCACTCCGTGGTTATTCGCATTACGGATGTGTTCGAAAAAGGAAAGAAGATTTCCGCCTTGACCTTGTTCGTGGATTGCAAATTTTTTGGTCGAGTTGACTCTTTATCGCCAATTTCGTCGATCTTCTCTTACAGAGGCACTTTGCTGTCGTTGCTGGATTTCAGAATAGGACAGAGAGCATATGGAAAGAAAGTTAATACCCCGTGGATGGGGGCCATAGAGAGTCTGTCACTGGTCTTCAAAAGACCCATAGAGGAAATTCTTGCGGAAGATGAGTGTACCTTGGCGGAACCAGCGAACAAAGCTCCCCAGCCTCCAGTTGAATCAACCCTACTTAGACAAGAAGATGTGGAGACCTTGGTTGGCCTCATACGGGATATTCGATACGACTTGTCTATGCAGGTTGCTGAGATCAAGTATTTGAGAAGACTAGTGGAAAACTGCCAGATGTGTCGAGTTCAAGATTTCTGTCGCTTCAAGCCATGCTTTCCTGGAGTGCCTTGTTTTAATGATCCCGCCACAGAACAGGGATTCGAGTGTGGGGAATGTCCGCTTGGAATGCTGGGAGATGGCATTAACTGCACCGACGTTGATGAGTGTAATGAAACTGACCCTTGTGCCACAGATGTTGGTGTTCTGTGTCACAATCGAAGTCCCGGATATTGGTGTCCACCTTGCCCAGATGGCTACGCGGGCAAAGAGATTCATGGGATTGGGTTGTACTTTGCAAGTAAAAACAAACAGATCTGCACAGATATTGATGAATGCTCAGAAGACCCTCCCAAATGTGCGACAGAATCTAAATGCATTAACACTATGGGAGGATACAAGTGCGCTGCTTGTCCTTCAGGATTTACAGGGGATCCCTACCACACCTGTTATCATTTGAGTTACTGCGATCCAAGCGATGCCAGAAGTAATCCATGCAGTCAACATGCTAGGTGCATTCGACTTCAAAGCGGGCGAGATTACAAGTGTGAGTGTCGAACCGGTTTCTCTGGAAATGGCCATCTGTGTGCCGAGGACTTAGATTTGGATGGCTTTCCTGACGTTGAGCTCAACTGCACAGAAAAGGAATGTCGCAAGGATAACTGCCTGAGAATACCAAATCCCGATCAAAAAGATCTGGACGATGACGGACTGGGCGACATTTGTGATGACGACTTGGATGGTGACAACATAAAGAATGACATGGATAACTGTCCCCGCCATTTCAACCCAGCTCAATACAACAACGATGGTGATCCATATGGTAACGATTGTGACAACTGCCCTTACGTCACCAACAAGTTTCAGAGTGATAATGATAAAGACGGTATTGGTGACGCATGTGATAAGGACGTTGATGGAGACGGTGTACTGAACTCCATAGACAACTGTCCTAAGATATCAAACCCGCTCCAGCTCGACTCTGATGGCGATACAGTGGGTGATGAGTGCGATAACTGTCCTTCGACAATGAATATCAGACAGTCCGATAGAGACGGAGATGGACTGGGTGATAACTGCGACACCGGGAGAGATGACGATAATGACGGTGTTGATGACATGATCGATAACTGCAGAGGAATTCCTAATCCTGATCAGATTGATAACGACAAAGATGAAAAAGGCGATGCTTGTGATAATGATGATGACGATGACGGTGTTCTGGATAGGGACGACAACTGCCAGTTAGTTCCCAATCCTACTCAACGAGATTTGAACGGCAATGGCTTAGGGGACCCTTGTGATGGCGATTTTGATGGAGACAAAGTCACAGATTACGAGGATGCCTGTTCGATTAACCATCACGTGACCCGTACAGACTTCAGCAGGTTGCAGAAAGTCGATTTGAGTCCATTTGAATCCTCGTCTGCAATCAAGCCGCCTATATGGGCTGTTGACTCAACGGGAACACAAGTCACAGAAGAAGAAAACAGCGATCCTGGAATTGCTGTTGGAGATGTTACATTCAACGGTGTGGATTTTAATGGAACACTTCGAGTAGGAACACAACACGATGATGACTTCGTAGGACTTGTGTTCAGTTACCAAAACAACAAACGGTTCTACCTTATATCTTGGAAACAGAGTGACCAGGTTTACTGGGAAATGAAACCGTTCAGAGCTTCAGCAGTTCGAGGAATTCAAATAAAGCTGGTTGATTCCGACACTGGACCAGGATTTGAGCTTAGGAATGCACTGTGGCATTCTGGTGACGTAAAAGGACAGGTGAAAGAAATTTGGCGAGACACCAAGCTCCAAGGATGGAAAGACGAAACAGATTACCACTTTAAGTTGATGCACAGACCTAACGTCGGACTAATAAGATTGGTGGTTTTTTCCGAGGCTGAGATAGTAGTGGATACTGGATACATAGTTGACAAGACTCTGAGAGGAGGAAGGCTTGGGTTGTACGTGTTTTCACAGGGTAAAGTCATCTGGGATAAGTTGTCCTACCGATGTAGTGAGCAAGTCCCGGATGACTTCCAAGCTCTGTAA

Transcript

evm.model.contig_42474.1

ATGGGGATGCAAAAGTTACTATCGATTGTCCATGTGGTTTTATGCGGTGCGGCGGCAATCGCTTTAGAAATAGACTTGTTGTCTCCAATCACCGAATCTCCCCTAAACTTCTACGTCAGACGTGTTTTGACGCCGAGCAGATCGAAAGCATACCTCTTTGGTCGATCAGTGAAGCTCATCCAGGCAGAAGAGGGTCTCCTTCAGAGAGTTATACTGAACATTGAATCGAACGAAGAATTCGTAATCAAATCAAAAATTCGTATCATTTCACCGCGACCCGGGACTTTGTTTTCTATTGCACATACTCAGAGGAAGCTGTTTCTTCTCGATTTGTCAAGCAAAGGAACAGGTGACAAGACGAGGCTGATTCTGAGATACAGATCAACTAATGACACTATGGAGACCATTGCGTTCAAAGATGTTGCACCTCTTGGTGACACTAAGAACTATCACTCCGTGGTTATTCGCATTACGGATGTGTTCGAAAAAGGAAAGAAGATTTCCGCCTTGACCTTGTTCGTGGATTGCAAATTTTTTGGTCGAGTTGACTCTTTATCGCCAATTTCGTCGATCTTCTCTTACAGAGGCACTTTGCTGTCGTTGCTGGATTTCAGAATAGGACAGAGAGCATATGGAAAGAAAGTTAATACCCCGTGGATGGGGGCCATAGAGAGTCTGTCACTGGTCTTCAAAAGACCCATAGAGGAAATTCTTGCGGAAGATGAGTGTACCTTGGCGGAACCAGCGAACAAAGCTCCCCAGCCTCCAGTTGAATCAACCCTACTTAGACAAGAAGATGTGGAGACCTTGGTTGGCCTCATACGGGATATTCGATACGACTTGTCTATGCAGGTTGCTGAGATCAAGTATTTGAGAAGACTAGTGGAAAACTGCCAGATGTGTCGAGttcaagaTTTCTGTCGCTTCAAGCCATGCTTTCCTGGAGTGCCTTGTTTTAATGATCCCGCCACAGAACAGGGATTCGAGTGTGGGGAATGTCCGCTTGGAATGCTGGGAGATGGCATTAACTGCACCGACGTTGATGAGTGTAATGAAACTGACCCTTGTGCCACAGATGTTGGTGTTCTGTGTCACAATCGAAGTCCCGGATATTGGTGTCCACCTTGCCCAGATGGCTACGCGGGCAAAGAGATTCATGGGATTGGGTTGTACTTTGCAAGTAAAAACAAACAGatcTGCACAGATATTGATGAATGCTCAGAAGACCCTCCCAAATGTGCGACAGAATCTAAATGCATTAACACTATGGGAGGATACAAGTGCGCTGCTTGTCCTTCAGGATTTACAGGGGATCCCTACCACACCTGTTATCATTTGAGTTACTGCGATCCAAGCGATGCCAGAAGTAATCCATGCAGTCAACATGCTAGGTGCATTCGACTTCAAAGCGGGCGAGATTACAAGTGTGAGTGTCGAACCGGTTTCTCTGGAAATGGCCATCTGTGTGCCGAGGACTTAGATTTGGATGGCTTTCCTGACGTTGAGCTCAACTGCACAGAAAAGGAATGTCGCAAGGATAACTGCCTGAGAATACCAAATCCCGATCAAAAAGATCTGGACGATGACGGACTGGGCGACATTTGTGATGACGACTTGGATGGTGACAACATAAAGAATGACATGGATAACTGTCCCCGCCATTTCAACCCAGCTCAATACAACAACGATGGTGATCCATATGGTAACGATTGTGACAACTGCCCTTACGTCACCAACAAGTTTCAGAGTGATAATGATAAAGACGGTATTGGTGACGCATGTGATAAGGACGTTGATGGAGACGGTGTACTGAACTCCATAGACAACTGTCCTAAGATATCAAACCCGCTCCAGCTCGACTCTGATGGCGATACAGTGGGTGATGAGTGCGATAACTGTCCTTCGACAATGAATATCAGACAgTCCGATAGAGACGGAGATGGACTGGGTGATAACTGCGACACCGGGAGAGATGACGATAATGACGGTGTTGATGACATGATCGATAACTGCAGAGGAATTCCTAATCCTGATCAGATTGATAACGACAAAGATGAAAAAGGCGATGCttgtgataatgatgatgacgatgacggtGTTCTGGATAGGGACGACAACTGCCAGTTAGTTCCCAATCCTACTCAACGAGATTTGAACGGCAATGGCTTAGGGGACCCTTGTGATGGCGATTTTGATGGAGACAAAGTCACAGATTACGAGGATGCCTGTTCGATTAACCATCACGTGACCCGTACAGACTTCAGCAGGTTGCAGAAAGTCGATTTGAGTCCATTTGAATCCTCGTCTGCAATCAAGCCGCCTATATGGGCTGTTGACTCAACGGGAACACAAGTCACAGAAGAAGAAAACAGCGATCCTGGAATTGCTGTTGGAGATGTTACATTCAACGGTGTGGATTTTAATGGAACACTTCGAGTAGGAACACAACACGATGATGACTTCGTAGGACTtgtgttcagttaccaaaacaACAAACGGTTCTACCTTATATCTTGGAAACAGAGTGACCAGGTTTACTGGGAAATGAAACCGTTCAGAGCTTCAGCAGTTCGAGGAATTCAAATAAAGCTGGTTGATTCCGACACTGGACCAGGATTTGAGCTTAGGAATGCACTGTGGCATTCTGGTGACGTAAAAGGACAGGTGAAAGAAATTTGGCGAGACACCAAGCTCCAAGGATGGAAAGACGAAACAGATTACCACTTTAAGTTGATGCACAGACCTAACGTCGGACTAATAAGATTGGTGGTTTTTTCCGAGGCTGAGATAGTAGTGGATACTGGATACATAGTTGACAAGACTCTGAGAGGAGGAAGGCTTGGGTTGTACGTGTTTTCACAGGGTAAAGTCATCTGGGATAAGTTGTCCTACCGATGTAGTGAGCAAGTCCCGGATGACTTCCAAGCTCTGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11598 all species →	COMP	Cartilage oligomeric matrix protein	Family	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF02412 all species →	TSP_3	Thrombospondin type 3 repeat	Domain	Interproscan
PF05735 all species →	TSP_C	Thrombospondin C-terminal region	Family	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR028974 all species →	Homologous_superfamily	TSP type-3 repeat	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR024665 all species →	Domain	Thrombospondin/cartilage oligomeric matrix protein, coiled-coil domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR017897 all species →	Repeat	Thrombospondin, type 3 repeat	Interproscan
IPR003367 all species →	Repeat	Thrombospondin, type 3-like repeat	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR008859 all species →	Domain	Thrombospondin, C-terminal	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR048287 all species →	Domain	Thrombospondin-like, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10199 all species →	THROMBOSPONDIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04659	THBS2S; thrombospondin 2/3/4/5	-	Glycosaminoglycan binding proteins	ko00536	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.