Gene detail

Detailed information of evm.model.contig_42642.2 in Platygyra sinensis

Genomic Location: contig_42642:38162...46999
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01868 all species →	RNase_P-MRP_p29	Ribonuclease P/MRP, subunit p29	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002730 all species →	Family	Ribonuclease P protein subunit Rpp29/RNP1	Interproscan
IPR036980 all species →	Homologous_superfamily	Ribonuclease P/MRP subunit Rpp29 superfamily	Interproscan
IPR016848 all species →	Family	Ribonuclease P/MRP subunit Rpp29	Interproscan
IPR023534 all species →	Homologous_superfamily	Rof/RNase P-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13348 all species →	RIBONUCLEASE P SUBUNIT P29	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001682 all species →	Biological Process	tRNA 5'-leader removal	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0030677 all species →	Cellular Component	ribonuclease P complex	Interproscan
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan
GO:0000172 all species →	Cellular Component	ribonuclease MRP complex	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0033204 all species →	Molecular Function	ribonuclease P RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03538	POP4, RPP29; ribonuclease P protein subunit POP4	EC:3.1.26.5	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.