Gene detail

Detailed information of evm.model.contig_43183.5 in Platygyra sinensis

Genomic Location: contig_43183:46969...69198
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_43183.5

ATGGTTCATGCTATGGCTGAAACAAAATCGGGACCATTGTCACCAAAGAAGCCGGTGAAAGAGAAAATCGTGGGAATCTACGATGATTTTTTTAAGGGAGATGATCCATCGCGTGAAAGTCCAAATTTCTGGCATGAATTTTTTCTCTTGAGGGTCAATGCTGTTTACCTGGAAAAGTGTATTGATAAGCTCAGCGAAGAGGGACTTATGGACATAAAGGAGAACATAAACCTTCTGTTTGCTCAGTGCTGTATTGCATTGCGAGGAGATCACCAAATAAAACTTGTCAATGCCCTGCAGACGCTTTGTGCATTAGTCCGCGCTGTTTACCGAAAGAGATTGGGGGACCATGGGTTTGACGTCATTAATATTTTGATTGGTTTTGATGCTGCAGAAGCACAGATGCAGGGATTGTTAGAGAGTTTACACACATTTCTAGTAGGGGACTATCCAGTGAGCTTAAAGAACTTGTCACTTAAGCTGGCTCTGATACTTGTTACAGCAACAGACAATGTTAGTCAGAACACAATAGTGGAGTATATCATGATAAACAGCATTTTTGAAGCAGTTATCCAGGTCCTTGCTGATCCAGTAGCAAGACAGCAACATGGCTACGAGGCGATGCTGCTCTTGACAGTGCTTGTGAATTACAGGAAGTATGAAGCTTCAAATCCTTACATTGGAAAGCTGTCAATCTTGGATGATGAACTGGCTCTAAATGGTTTTGGATGTGTCATATCAGCTGCACTTACCGATTACAACAGGAGGCATGCAGCTATGTTGGAACAGGCCTCTGGAGGATTGATCAGTTCCATAACAAGCTTTGTTGGAAGCATGTTTGTTGCTGAGACGGAGAGATCTGAGTGTTTCAGTACCAATGAAGCTGTCCTTTTGGCATTGTATGAAGCAGTCCACCTTAACAGAAATTTTTTCACTGTCCTTAGTCATGTCACGACTGCTCCAGGGTCCAGTCCCCCTCCGTCACCTACTGCTGCTCCTCCTGTTGTTGAAAGGACTGCAACTGCTGCTGTTGTTGAAGATTTTCCTCCAGACTTGAGGCAACCCACCAATTTACTTGTCACTCTTTTGACATACTCTTCCATTGCTGTACAGAATACAAAAGACGACAAGGGTATAAGCAATGCCAAGCTGTGTCTGATCATTTTAACTTGCATTGTTGAGACGGAGAACGGCAACGAAATGTACAAAGATTTACGACGCACGTGCACAGACATTGTTATGCTCATTAAACCTTTTCTTTGGCGACGTCCCTTTGCCGTTGCCGTCGTGGTTTGCTTAAGTTCTCTAATAATGGCGACAACGGCGGCCTTCGGCGAAGACATTCCTTTGGCTTTTAGAGGAGATCAATACGCCAATGTTTTTCTTCATGATGCAAACATGACGTTCTCAGTCCCTTTACATAGAGTGCAAATGTATCACAGAGGCGCCGTTATTGAAAAGAATGCTCCTTCACGACCTCTTGCGTGCGCATTACTTGATCTTATGGTGGAGTTTATTGTGACTCACATGATGAAAACTCTGCCAACCGACTTATACAGTAAAACGTTTGGAATTCTCCACCGTATGCTTTGTTACCAGAAGAGATGTCGTGTGAGGCTGTCTTATTCTTGGAAGAACTTCTGGACTGCTCTAATGAACTTCCTTAAATTCCTTCTGTCTAATGAAAGTGCGCTCACAAAGACCTCTGATATCTTCTCTCTGGCCTCACAGGTGGTGAATATCTTCAATTTGTTTATCACGTATGGCGACACATTTCTGCCTTCTCCCACATCATATGATGAGCTTTACTACGAAATCATACGCGTTCATCAGATTTTTGACAACCTCTATTCAATGGCATTAAGACATTCAACGAATGGAGGCGACTGGAAAGATCCTGCATCCCGTCTTGCCAGCTCTTTAGTGAATGTCAGGGCAATCATAAACCATTTTACGCCGAAAATCGATTCATGGGCAGCTGTCAATCATCTGACGTCACTCTCTTCGGAACAGGTGCTAAGCGTGATTCGGAGTAATTATGACACATTAACCCTAAAACTACAAGAGAACTTAGATCATTATGAAAAATACTCAGAGAAGCCGAAGGAGGCGGCCTACTTTACTCAACTGGTCCGCTCGATAGTGATCGATGTTCGGAGGACGATCTCTGTTAGCAATCTAGAGCAGTTCAGCTTGCTTCAAGAATTTGCTTCAATCCACTGA

Transcript

evm.model.contig_43183.5

ATGGTTCATGCTATGGCTGAAACAAAATCGGGACCATTGTCACCAAAGAAGCCGGTGAAAGAGAAAATCGTGGGAATCTACGATGATTTTTTTAAGGGAGATGATCCATCGCGTGAAAGTCCAAATTTCTGGCATGAATTTTTTCTCTTGAGGGTCAATGCTGTTTACCTGGAAAAGTGTATTGATAAGCTCAGCGAAGAGGGACTTATGGACATAAAGGAGAACATAAACCTTCTGTTTGCTCAGTGCTGTATTGCATTGCGAGGAGATCACCAAATAAAACTTGTCAATGCCCTGCAGACGCTTTGTGCATTAGTCCGCGCTGTTTACCGAAAGAGATTGGGGGACCATGGGTTTGACGTCATTaatattttgattggttttgatGCTGCAGAAGCACAGATGCAGGGATTGTTAGAGAGTTTACACACATTTCTAGTAGGGGACTATCCAGTGAGCTTAAAGAACTTGTCACTTAAGCTGGCTCTGATACTTGTTACAGCAACAGACAATGTTAGTCAGAACACAATAGTGGAGTATATCATGATAAACAGCATTTTTGAAGCAGTTATCCAGGTCCTTGCTGATCCAGTAGCAAGACAGCAACATGGCTACGAGGCGATGCTGCTCTTGACAGTGCTTGTGAATTACAGGAAGTATGAAGCTTCAAATCCTTACATTGGAAAGCTGTCAATCTTGGATGATGAACTGGCTCTAAATGGTTTTGGATGTGTCATATCAGCTGCACTTACCGATTACAACAGGAGGCATGCAGCTATGTTGGAACAGGCCTCTGGAGGATTGATCAGTTCCATAACAAGCTTTGTTGGAAGCATGTTTGTTGCTGAGACGGAGAGATCTGAGTGTTTCAGTACCAATGAAGCTGTCCTTTTGGCATTGTATGAAGCAGTCCACCTTAACAGAAATTTTTTCACTGTCCTTAGTCATGTCACGACTGCTCCAGGGTCCAGTCCCCCTCCGTCACCTACTGCTGCTCCTCCTGTTGTTGAAAGGACTGCAACTGCTGCTGTTGTTGAAGATTTTCCTCCAGACTTGAGGCAACCCACCAATTTACTTGTCACTCTTTTGACATACTCTTCCATTGCTGTACAGAATACAAAAGacGACAAGGGTATAAGCAATGCCAAGCTGTGTCTGATCATTTTAACTTGCATTGTTGAGacggagaacggcaacgaaatgtacaaagatttacgACGCACGTGCACAGACATTGTtatgctcattaaaccttttctTTGGCGACGTCCctttgccgttgccgtcgtggtttgcttaagttctcTAATAATGGCGACAACGGCGGCCTTCGGCGAAGACATTCCTTTGGCTTTTAGAGGAGATCAATACGCCAATGTTTTTCTTCATGATGCAAACATGACGTTCTCAGTCCCTTTACATAGAGTGCAAATGTATCACAGAGGCGCCGTTATTGAAAAGAATGCTCCTTCACGACCTCTTGCGTGCGCATTACTTGaTCTTATGGTGGAGTTTATTGTGACTCACATGATGAAAACTCTGCCAACCGACTTATACAGTAAAACGTTTGGAATTCTCCACCGTATGCTTTGTTACCAGAAGAGATGTCGTGTGAGGCTGTCTTATTCTTGGAAGAACTTCTGGACTGCTCTAATGAACTTCCTTAAATTCCTTCTGTCTAATGAAAGTGCGCTCACAAAGACCTCTGATATCTTCTCTCTGGCCTCACAGgtGGTGAATATCTTCAATTTGTTTATCACGTATGGCGACACATTTCTGCCTTCTCCCACATCATATGATGAGCTTTACTACGAAATCATACGCGTTCATCAGATTTTTGACAACCTCTATTCAATGGCATTAAGACATTCAACGAATGGAGGCGACTGGAAAGATCCTGCATCCCGTCTTGCCAGCTCTTTAGTGAATGTCAGGGCAATCATAAACCATTTTACGCCGAAAATCGATTCATGGGCAGCTGTCAATCATCTGACGTCACTCTCTTCGGAACAGgTGCTAAGCGTGATTCGGAGTAATTATGACACATTAACCCTAAAACTACAAGAGAACTTAGATCATTATGAAAAATACTCAGAGAAGCCGAAGGAGGCGGCCTACTTTACTCAACTGGTCCGCTCGATAGTGATCGATGTTCGGAGGACGATCTCTGTTAGCAATCTAGAGCAGTTCAGCTTGCTTCAAGAATTTGCTTCAATCCACTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08427 all species →	ARMH3_C	Armadillo-like helical domain-containing protein 3, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039868 all species →	Family	Armadillo-like helical domain-containing protein 3-like	Interproscan
IPR013636 all species →	Domain	Armadillo-like helical domain-containing protein 3, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13608 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23951	DYM; dymeclin	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.