Gene detail

Detailed information of evm.model.contig_43270.2 in Platygyra sinensis

Genomic Location: contig_43270:6758...24361
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_43270.2

ATGCCAGCCGCCCCAATTCCTCCGCAGAATTATAGTACAGTGTTAAGCGCTCCCTTTCAGTTAAATTCCAAGCCAAATTCATCTCCACAGCGCACGCTACAAAGCTCTTTATCGAAGAAAGCTAGCCATCTGGGCAGAGACACCATGCTGTCGGGTCCAACCATGGACACATGCGAAGCCCAAGTGGAGTGCCGGGCTAACAAATTGACCCTGACCAGGGGATGGGAGTGCACAGTTCAAGACAGGCCATGTTTTAGAATTCTAGATGAAGGTCAGCGAGAAGTGACTTTAGACAACTCATTGGCCAGTAGATTCAAGGTGAACTGGACTCCTAAGGTTGCTAAAGAAATCATCAAGCAAGGAATTCTTCCAGATGTCAAGGCTCCACTGTCTTGTGATGAACCAAAGTATTGTCAAGTAAGCATGACTGGTGGAGCTGGACTGGAGTTTTCTTTTACAGTAAAACCTCTGGCTGACGTACCTAACATCCTGAAGTGTTCTTGTGAAGAACCTCACATGAGATTAGGGGAACCTCTGGTATCTGATATTATCTTGTCAGTAACTGACAAACATGGCAACAAAACTGGGAAGTTACCAAGCAATGTGCTGCCGGAATTTCATGTTTCCTCAGAAGGATTGAAAGAGCATGAAGTTCAGTTGGGATTTACTGCAGAGGGAAATATAGTGATCAAGAACATTCAATTTGAAGATGGACCGCTTGGACACAGAGAGCTTACCATAAAATGGAAGGAAATGAAGTGCTATCAAAGATTAGAGGTCACTGCAGGTCCACCGGCAAAACTCAAGATTATTGACATTGATCATTCTGAGCCGCTGTCAGTGTATAATGACACCAGAATGCCAATTCCGCTGAATGTGCAACTATGTGACAAACTTGGAAACCCCTCACACGAGCAGAACGTCAAGGTGGTCCTAAACTGTGACAGAGGGATTAAGTTGACTCCAACACCTGCAGGTCAAAAGACAGACAACAAAGGCCAAGCCTCCTTTGGTCATCTCACCGTCAATGCAGTAAGAGGAATGTATGGAATAAGAATCAAAGCTCTCCTGGGAAGAACAGCGATAGATGCACCAACTATCAACGTGAGAGTGGAGCCAGATCCATCCAAAGCTGTAAAGCTGAGCGTGACGTTTGACTCGAAGGCTTCTTGTGTGGTAGGAGAGTTGTTACCAGCTGTGTCAGCTCATGTAGTTGGGGAGGATGAGGCAGTGATGAAGGCAGCAAGTGCTAAAGACTTGGTATTAAAGATATGGCACTCCAAGGATGGCCCAGTCTCTGACAAACCTCCAGCTCGGGCCACGACTTTGTATCCATCTAAAAGGAAAGTGTCAGACAAGGAAGGCGAATTCTACTTTAGGGATCTCAAGGTACCTGACGTATCAGGGCCGTACTGTATGGTGGTACAGTTTGGATCTGGAGGAGCCGTCACTCTCTCAAGTAAACCGATCACGTTCACTGCAAAGGCTGGACAACCAGTAAAGCTTGAACCAGAAACGATTCCTGCTACTCCAACTGTGTCCAACACACAGAGAAACAACAGTCGAGTACTCGTCAAGACACTCAAACTGCAGCTCAAGGACAAATTTGACAACTTAACTGGCGAGAACCTAAGAGGTAAAGTACTTATCAAGGTGACCACTCCATCAGAAGGCATAGATGAGATTCCCGCCCTGGCAGGGAATGTGTACTCCATGGAGGTACCCCTCTTCAGGGGTGTGGCCACTGTACAGAACCTGCTTATACAAGAGAACACTCCTGGCAAAGATGGACAGGAGTATCTTCTGAATTTCGAAACTCAGATCCCTGCTAATGCCTCGCCTCATCCTATTCCACCGTTCACATTGGCTTTCTTGTTTTACAATGATGTCAGGAAACAGCAGCAGATGGCTCAGCTGACAAAAGAGAGAGATCACTTGTTTGAGACGATACGCACGTACCGGCTTCTGTTTGAAACAACTCGGCAACTCATTAACGAGATGCAAGTTTCAGTGCACGAAGCCTCTTTACAAGAACAAAAGTTAAGAGGAGAACTTAGGAAGCAGAACATTCCAGCAAGTAGTTTAGCAACGCCTGCAGCAGTGACGTCACTAATAGAGGACTTGTCAAGAAAGAGAGATCAAATCGCCAGTACTCCCAGGAGACAGTGTCTCTTACATCCCGGACCCCGAGGGGACTCAGGAATTCTGGGAAAGGTAGCTCATTTAGCTCAAGTAGTGGATGATGATGTAGCGCGAGTATTGTCCTGGCACATGGCGTCTGATATGGACTGTGTTGTCACTCTTACAACTGAAAAGGCTAAACAAGTATATCGTGATTCTAATGGTCAGCAACAAGTTCTTCCTCTCGACTCCATATTCAGACGAAGTTTACCAGAATGGAACAGACCGCTGCCACATGTCCGCGGCTCAAGTAACTACAGTCCGACTGGGAACCCTGTGTACGCACGAGATATGCTACTATTCCCTGCAGAAGGAGACAATTGCAAGTTAGTGTTTGGTATGCTGCTCGGAGATACTTTGATTCTAGATGACCTTGACTGCGCAAATAGATACAGACAGGAGGTTGTGAAGTACACTCATTGTCCTACAATTCTGACACGGAGCGGAGACCGCATCAGGAGTAACGGTAAATTTGGTGGTCTTCAGAATAAAGCTCCTCCTTTGGAAAGAATGCGCGGTGCGGTTTTCGCTGCGCCACTTCCACTTGCATTCCATTCACTTACAACACAGATCGATCAACTGCAGGCATACAAGCAAGCCGTCTTGAAACACACGCAAGCCAAGGAGGAACTGTCGCTACAGCTACAGCACGGACAAACTGAGGAGATGAAAGTGAAACATCGCGAGTGTAGAGAAGCAGAAACCCAGTTACGCATGATTGAGGAGCGCCTGGGTATGACCCCAACACAATACAACATGCCCCCCTCTCCTGCCACCATGTTACTCACAGAACTCAGTACGCCTCCAGCAAGGACCGCTACCTCTCGTCGCGCAGGCGCACGAGCTGCAGCAGCCGCTTCCGCCTCTCCAAACTTATCGGCTCCAGTCGTAAATGGCACGAACAACACTTCGGGAACTACGAGCACTCCGCGAACGAGACGAGGACCTCCAGTCGCTGCTGAAGATGTACGTTCCAGTAAACGAACGCGGAGATGA

Transcript

evm.model.contig_43270.2

atgccagccgccccaattcctccgcagaattatagtacagtgttaagcgctccctttcagttaaattccaagccaaattcatctccacagcgcacgctacaaagctctttatcgaagaaagctagccatcTGGGCAGAGACACCATGCTGTCGGGTCCAACCATGGACACATGCGAAGCCCAAGTGGAGTGCCgggctaacaaattgaccctgaccaggggaTGGGAGTGCACAGTTCAAGACAGGCCATGTTTTAGAATTCTAGATGAAGGTCAGCGAGAAGTGACTTTAGACAACTCATTGGCCAGTAGATTCAAGGTGAACTGGACTCCTAAGGTTGCTAAAGAAATCATCAAGCAAGGAATTCTTCCAGATGTCAAGGCTCCACTGTCTTGTGATGAACCAAAGTATTGTCAAGTAAGCATGACTGGTGGAGCTGGACTGGAGTTTTCTTTTACAGTAAAACCTCTGGCTGACGTACCTAACATCCTGAAGTGTTCTTGTGAAGAACCTCACATGAGATTAGGGGAACCTCTGGTATCTGATATTATCTTGTCAGTAACTGACAAACATGGCAACAAAACTGGGAAGttaccAAGCAATGTGCTGCCGGAATTTCATGTTTCCTCAGAAGGATTGAAAGAGCATGAAGTTCAGTTGGGATTTACTGCAGAGGGAAATATAGTGATCAAGAACATTCAATTTGAAGATGGACCGCTTGGACACAGAGAGCTTACCATAAAATGGAAGGAAATGAAGTGCTATCAAAGATTAGAGGTCACTGCAGGTCCACCGGCAAAACTCAAGATTATTGACATTGATCATTCTGAGCCGCTGTCAGTGTATAATGACACCAGAATGCCAATTCCGCTGAATGTGCAACTATGTGACAAACTTGGAAACCCCTCACACGAGCAGAACGTCAAGGTGGTCCTAAACTGTGACAGAGGGATTAAGttgaCTCCAACACCTGCAGGTCAAAAGACAGACAACAAAGGCCAAGCCTCCTTTGGTCATCTCACCGTCAATGCAGTAAGAGGAATGTATGGAATAAGAATCAAAGCTCTCCTGGGAAGAACAGCGATAGATGCACCAACTATCAACGTGAGAGTGGAGCCAGATCCATCCAAAGCTGTAAAGCTGAGCGTGACGTTTGACTCGAAGGCTTCTTGTGTGGTAGGAGAGTTGTTACCAGctgTGTCAGCTCATGTAGTTGGGGAGGATGAGGCAGTGATGAAGGCAGCAAGTGCTAAAGACTTGGTATTAAAGATATGGCACTCCAAGGATGGCCCAGTCTCTGACAAACCTCCAGCTCGGGCCACGACTTTGTATCCATCTAAAAGGAAAGTGTCAGACAAGGAAGGCGAATTCTACTTTAGGGATCTCAAGGTACCTGACGTATCAGGGCCGTACTGTATGGTGGTACAGTTTGGATCTGGAGGAGCCGTCACTCTCTCAAGTAAACcgATCACGTTCACTGCAAAGGCTGGACAACCAGTAAAGCTTGAACCAGAAACGATTCCTGCTACTCCAACTGTGTCCAACACACAGAGAAACAACAGTCGAGTACTCGTCAAGACACTCAAACTGCAGCTCAAGGACAAATTTGACAACTTAACTGGCGAGAACCTAAGAGGTAAAGTACTTATCAAGGTGACCACTCCATCAGAAGGCATAGATGAGATTCCCGCCCTGGCAGGGAATGTGTACTCCATGGAGGTACCCCTCTTCAGGGGTGTGGCCACTGTACAGAACCTGCTTATACAAGAGAACACTCCTGGCAAAGATGGACAGGAGTATCTTCTGAATTTCGAAACTCAGATCCCTGCTAATGCCTCGCCTCATCCTATTCCACCGTTCACATTGGCTTTCTTGTTTTACAATGATGTCAGGAAACAGCAGCAGATGGCTCAGCTGACAAAAGAGAGAGATCACTTGTTTGAGACGATACGCACGTACCGGCTTCTGTTTGAAACAACTCGGCAACTCATTAACGAGATGCAAGTTTCAGTGCACGAAGCCTCTTTACAAGAACAAAAGTTAAGAGGAGAACTTAGGAAGCAGAACATTCCAGCAAGTAGTTTAGCAACGCCTGCAGCAGTGACGTCACTAATAGAGGACTTGTCAAGAAAGAGAGATCAAATCGCCAGTACTCCCAGGAGACAGTGTCTCTTACATCCCGGACCCCGAGGGGACTCAGGAATTCTGGGAAAGGTAGCTCATTTAGCTCAAGTAGTGGATGATGATGTAGCGCGAGTATTGTCCTGGCACATGGCGTCTGATATGGACTGTGTTGTCACTCTTACAACtgaaaagGCTAAACAAGTATATCGTGATTCTAATGGTCAGCAACAAGTTCTTCCTCTCGACTCCATATTCAGACGAAGTTTACCAGAATGGAACAGACCGCTGCCACATGTCCGCGGCTCAAGTAACTACAGTCCGACTGGGAACCCTGTGTACGCACGAGATATGCTACTATTCCCTGCAGAAGGAGACAATTGCAAGTTAGTGTTTGGTATGCTGCTCGGAGATACTTTGATTCTAGATGACCTTGACTGCGCAAATAGATACAGACAGGAGGTTGTGAAGTACACTCATTGTCCTACAATTCTGACACGGAGCGGAGACCGCATCAGGAGTAACGGTAAATTTGGTGGTCTTCAGAATAAAGCTCCTCCTTTGGAAAGAATGCGCGGTGCGGTTTTCGCTGCGCCACTTCCACTTGCATTCCATTCACTTACAACACAGATCGATCAACTGCAGGCATACAAGCAAGCCGTCTTGAAACACACGCAAGCCAAGGAGGAACTGTCGCTACAGCTACAGCACGGACAAACTGAGGAGATGAAAGTGAAACATCGCGAGTGTAGAGAAGCAGAAACCCAGTTACGCATGATTGAGGAGCGCCTGGGTATGACCCCAACACAATACAACATGCCCCCCTCTCCTGCCACCATGTTACTCACAGAACTCAGTACGCCTCCAGCAAGGACCGCTACCTCTCGTCGCGCAGGCGCACGAGCTGCAGCAGCCGCTTCCGCCTCTCCAAACTTATCGGCTCCAGTCGTAAATGGCACGAACAACACTTCGGGAACTACGAGCACTCCGCGAACGAGACGAGGACCTCCAGTCGCTGCTGAAGATGTACGTTCCAGTAAACGAACGCGGAGATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06470 all species →	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010935 all species →	Domain	SMCs flexible hinge	Interproscan
IPR036277 all species →	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan
IPR038892 all species →	Family	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22640 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0051276 all species →	Biological Process	chromosome organization	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23113	SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.