Gene detail

Detailed information of evm.model.contig_44411.1 in Platygyra sinensis

Genomic Location: contig_44411:4859...33435
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_44411.1

ATGCAAGCTGATGTCAATCTTTTGGATGGCAATAACAGAATGACACAGGCCAAGCTGTCTCTCCGCTTGGAATACATTCCTCCTAAACCAGGCAAGAGTGTTGAAGGGGAAATAACAGTCACGGACGAAACTGATTTGGGTACAGAACTAGATGATGAATTTGGGCTGCAAGAAGAAGAAGGCATGGATGAGTTGGAGGGAGGAGGTGCTGCAGGTGTGAGTGAGACAGCAAGAAAAAAGCGAAAGAGAAGGAGAACAGCGAGGCACAAGTTGTCAAATAAACCCCAGGATTTTCAGGTTCGTGTACGAATCATAGAAGGTCGGCAGCTCTCTGGTTCTAACATAAGTCCAGTTGTCAGATGTACAGTGGCTAACCACACTCGCCAGACTAAAGTCAAGCACTCAACAAACAAACCCTTCTTTGATGAGACTTTCTTCTTTAATTTTCAAATGTCACCATTAGAGTTGTTTGATGAAATTATCAGCTTTGAGGTGTTCAATTCAAGGAAACTGAGGGCTAATGCCATGATTGGCTATTTCAAGAGTGATATTGGCTTTTTCTATGATGAGCCAGCCCATGCTGTTGTACGGAAATGGGTTTTACTCACTGATCCTGATGACAAGATGGCTGGGGTTAAGGATGAGGACGAAGATGATGAGAAGCCTGACACAGGGAAGTCACGAGGAGCATCTGGCAGAAAAATTGGTGGAATTCCAGCAGGTTATGTCAAAGTCACTGTTATGGTCCTTGGTCCTGGAGATGAAGCCCCATCTACCTCTAAAAGTGTAACTGAGGATGACACTGATGACATTGAGTCAAATTTGCTGCAGCCTTCTGGAGTGATGCTACGCCCAGCTGTCTTCTCACTAAAAGTATACAGAGCTGAAGATATCCCTCAAATGGACTCTGGCTTCTTCGAAGGAGTCAAAAAAGTTTTTCATGTTAAAGAGGACCAAAAGGAACTTGTAGATCCCTATCTTGTCTTTAATTTTGCTGGACGAAAGGCAAAGACAAGAGTACATTACAATTCAGATCACCCTGAATTTAACACAGAACTCAATGTACTATTCAAGTTCCCATCCATGTGTGAAAGACTCAAACTACAAATATTTGACTGGGATCGATTGACAGCTGATGACTGTATTGGCACGGCTTACATGCCAATATCTGCCATCTCAGGACAGGGTGATGATGGGTTCCTACCCTTGTTTGGTCCTTGTTACATCAACTTTTATGGCTCAACAAGAGAATACTCTGATCTACCTGATGAGTATGATGACTTGAATATGGGAATTGGTGAGGGCGTTGCTTACAGAGGGAGAGTGTTGGTAGAGCTGGAAACTAAACTGGGACCATCTTCAAAGGAACCTGCCGAGGATCTTCAGAGTCACGAAATTATTCGTGTGCAGGTAAGTGTAGCTAAGGCCATCCAGAATTTAGTTTTACAAACTAAACTTCGCCATACTTACGCAGGCGTAAGTTCAAGCTCTTTGCGTGCTTTCTTGGAAGCGTCCATGATATCATCAACAGATGGACCAGTGGAATTCGAAGTTAGCATAGGAAATTATGGTAACAAGCTCGATCAGTCAGTGCCTCCTTCCTCCTCGACCACTCCACCCACAAACGCTGTGTATGATGGCTGTTACTATTACTACCTTCCATGGGGAGACACTAAGCCTTGCGTGTGTGTGGACAGTCACTGGGAAGACATTTCCTTCAGATTGGACAACTTGAATATCTTAACCAGACTATGTGAACGATTGGTAAGAAAACAACATCGAAAAAGTTCACTGAGTTTAGAAGCTAATGCACCGACTGCTGAAACCGCTTCACTTCTCATATCCTTGCTAGATCAACTGATTAGTGATTGCAGGAAACCTTTACCAAAGATTGACAGTTCTACCCCTGGTGTCAATGAGCTGGACTTGAAGATTCAGGAGACGAGGATGATGGAAAAGTTGGCCATCATGGAAGAGGCAAGCAAGCTTCGTGAAAGTGCGACTGATGTTGCAGAGGCTATGTCAGAAATTGAGGGTTACATGCAGAGGTTAAAAGACATGGCTATTGAGCCCCAGAACAGCATGCCTGATGTGGTCATCTGGTTGATCAGTGGCACCAAACGAATTGCATCTTTCCGTATTCCAGCTTATGAGGTTCTGTTCTCACCACAATCCGATGCTTGTGGTCAGTACTGTGGCAAGGTCTTCAACATGTTCATGAAGTACCCAGGTAAGAAACAAATGAACCTGGAAGACTTTCCAGAAGTACCTGCTCATGTTCGAATGATAATCTGGCTGGGTCTTGAGAAGCATCAAGAGGATTGGACCAACAGGGAGCAAACAGAGGGCGACTTCTGTGTTTATGCTGAAACGGTTAAATTGTATCAAGAGTATTTCGTCCCTCCTCCTGGCTGGCATTTTGAGGGAGATTGGTTTGTGAACCCCGAGCTCAGCATGACGTATGATCGAGACAGTGGTCACAAAAGCTTCCTTGAGGATGTGTTTGAAAATGAGTCTCGTCTTCCAGGAGGAAGCTGGGGACCTTCTTCTGTGCCCTGGACAGATGTGCGTGGTGATGCTGTGACAGCTAGGGATGAGATCGTATGTCCAGAAGACTGGGAGTGGACCACAGACTGGGCAGTGGACTTGAACAGAGCCGTGGATGAAGATGGTTATATCTTGTTTTTGTTTATTCTCTTATTCTCTTTAATTATTTTCAGTCGTTATGGCTCGTCTCTTTCTTCCTCCTTGCCGTTTATTAAATGA

Transcript

evm.model.contig_44411.1

ATGCAAGCTGATGTCAATCTTTTGGATGGCAATAACAGAATGACACAGGCCAAGCTGTCTCTCCGCTTGGAATACATTCCTCCTAAACCAGGCAAGAGTGTTGAAGGGGAAATAACAGTCACGGACGAAACTGATTTGGGTACAGAACTAGATGATGAATTTGGGCTGCAAGAAGAAGAAGGCATGGATGAGTTGGAGGGAGGAGGTGCTGCAGGTGTGAGTGAGACAGCAAGAAAAAAGCGAAAGAGAAGGAGAACAGCGAGGCACAAGTTGTCAAATAAACCCCAGGATTTTCAGGTTCGTGTACGAATCATAGAAGGTCGGCAGCTCTCTGGTTCTAACATAAGTCCAGTTGTCAGATGTACAGTGGCTAACCACACTCGCCAGACTAAAGTCAAGCACTCAACAAACAAACCCTTCTTTGATGAGActttcttctttaattttcaaatgtCACCATTAGAGTTGTTTGATGAAATTATCAGCTTTGAGGTGTTCAATTCAAGGAAACTGAGGGCTAATGCCATGATTGGCTATTTCAAGAGTGATATTGGCTTTTTCTATGATGAGCCAGCCCATGCTGTTGTACGGAAATGGGTTTTACTCACTGATCCTGATGACAAGATGGCTGGGGTTAAGGATGAGGACGAAGATGATGAGAAGCCTGACACAGGGAAGTCACGAGGAGCATCTGGCAGAAAAATTGGTGGAATTCCAGCAggtTATGTCAAAGTCACTGTTATGGTCCTTGGTCCTGGAGATGAAGCCCCATCTACCTCTAAAAGTGTAACTGAGGATGACACTGATGACATTGAGTCAAATTTGCTGCAGCCTTCTGGAGTGATGCTACGCCCAGCTGTCTTCTCACTAAAAGTATACAGAGCTGAAGATATCCCTCAAATGGACTCTGGCTTCTTCGAAGGAgtcaaaaaagtttttcatgTTAAAGAGgACCAAAAGGAACTTGTAGATCCCTATCTTGTCTTTAATTTTGCTGGACGAAAGGCAAAGACAAGAGTACATTACAATTCAGATCACCCTGAATTTAACACAGAACTCAATGTACTATTcaagTTCCCATCCATGTGTGAAAGACTCAAACTACAAATATTTGACTGGGATCGATTGACAGCTGATGACTGTATTGGCACGGCTTACATGCCAATATCTGCCATCTCAGGACAGGGTGATGATGGGTTCCTACCCTTGTTTGGTCCTTGTTACATCAACTTTTATGGCTCAACAAGAGAATACTCTGATCTACCTGATGAGTATGATGACTTGAATATGGGAATTGGTGAGGGCGTTGCTTACAGAGGGAGAGTGTTGGTAGAGCTGGAAACTAAACTGGGACCATCTTCAAAGGAACCTGCCGAGGATCTTCAGAGTCACGAAATTATTCGTGTGCAGGTAAGTGTAGCTAAGGCCATCCAGAATTTAGTTTTACAAACTAAACTtcgCCATACTTACGCAGGCGTAAGTTCAAGCTCTTTGCGTGCTTTCTTGGAAGCGTCCATGATATCATCAACAGATGGACCAGTGGAATTCGAAGTTAGCATAGGAAATTATGGTAACAAGCTCGATCAGTCAGTGCCTCCTTCCTCCTCGACCACTCCACCCACAAACGCTGTGTATGATGGCTGTTACTATTACTACCTTCCATGGGGAGACACTAAGCCTTGCGTGTGTGTGGACAGTCACTGGGAAGACATTTCCTTCAGATTGGACAACTTGAATATCTTAACCAGACTATGTGAACGATTGGTAAGAAAACAACATCGAAAAAGTTCACTGAGTTTAGAAGCTAATGCACCGACTGCTGAAACCGCTTCACTTCTCATATCCTTGCTAGATCAACTGATTAGTGATTGCAGGAAACCTTTACCAAAGATTGACAGTTCTACCCCTGGTGTCAATGAGCTGGACTTGAAGATTCAGGAGACGAGGATGATGGAAAAGTTGGCCATCATGGAAGAGGCAAGCAAGCTTCGTGAAAGTGCGACTGATGTTGCAGAGGCTATGTCAGAAATTGAGGGTTACATGCAGAGGTTAAAAGACATGGCTATTGAGCCCCAGAACAGCATGCCTGATGTGGTCATCTGGTTGATCAGTGGCACCAAACGAATTGCATCTTTCCGTATTCCAGCTTATGAGGTTCTGTTCTCACCACAATCCGATGCTTGTGGTCAGTACTGTGGCAAGGTCTTCAACATGTTCATGAAGTACCCAGGTAAGAAACAAATGAACCTGGAAGACTTTCCAGAAGTACCTGCTCATGTTCGAATGATAATCTGGCTGGGTCTTGAGAAGCATCAAGAGGATTGGACCAACAGGGAGCAAACAGAGGGCGACTTCTGTGTTTATGCTGAAACGGTTAAATTGTATCAAGAGTATTTCGTCCCTCCTCCTGGCTGGCATTTTGAGGGAGATTGGTTTGTGAACCCCGAGCTCAGCATGACGTATGATCGAGACAGTGGTCACAAAAGCTTCCTTGAGGATGTGTTTGAAAATGAGTCTCGTCTTCCAGGAGGAAGCTGGGGACCTTCTTCTGTGCCCTGGACAGATGTGCGTGGTGATGCTGTGACAGCTAGGGATGAGATCGTATGTCCAGAAGACTGGGAGTGGACCACAGACTGGGCAGTGGACTTGAACAGAGCCGTGGATGAAGATGGTTAtatcttgtttttgtttattctcTTATTCTCTTTAATTATTTTCAGTCGTTATGGCTCGTCTCTTTCTTCCTCCTTGCCGTTTATTAAATGA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000314 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08150 all species →	FerB	FerB (NUC096) domain	Domain	Interproscan
PF08165 all species →	FerA	FerA (NUC095) domain	Domain	Interproscan
PF08151 all species →	FerI	FerI (NUC094) domain	Domain	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR037721 all species →	Family	Ferlin family	Interproscan
IPR006614 all species →	Domain	Peroxin/Ferlin domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR012561 all species →	Domain	Ferlin B-domain	Interproscan
IPR037720 all species →	Domain	Ferlin, second C2 domain	Interproscan
IPR012560 all species →	Domain	Ferlin A-domain	Interproscan
IPR012968 all species →	Domain	FerIin domain	Interproscan
IPR037722 all species →	Domain	Ferlin, third C2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12546 all species →	FER-1-LIKE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007009 all species →	Biological Process	plasma membrane organization	Interproscan
GO:0061025 all species →	Biological Process	membrane fusion	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22125	MYOF; myoferlin	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.