Gene detail

Detailed information of evm.model.contig_44696.1 in Platygyra sinensis

Genomic Location: contig_44696:213...3615
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_44696.1

ATGACGCAAACCAGCGATACTCTTTCTAAAGAAGATAATGAGCAACAGAATAAGACCTTAGAAACTCAATATGCAGCTAAAACGGATGAAACACAACAGGGCTCTAACTCGAAACCAAATGCACCCACAACAAAAAGTGAAAAACCACCTTTGTCTGTAGCTGGGCCTTCAAAGCCCTCTAATGGACAAGCTCAGTTGCCAGGAAACGGTAAAAGAACAGGTCCGCCTTTAATACCTCCTGCTCCAGGCCCTGGGGTACAGGCACCCTTGAGACCTCCTCTGGCACATCCCTTACTTCACCCTCAGCTGGTTCAGCAGTTTCATCTTCAGCAGTTACGGATGGCTCAGGGAGGACTACTTCAGCCTCCCTTCACTCCTCAACAGTTTGCCATGTTACAGCAGATCGCTCAGCTTCAGCTCGTTCAGCAGCGTCTGGCTGCACAGTCTGTTGCCCAGCAACACATGGGACAGAAACAACAAGTAGTTCCTCAACAACAGCTGTATCAACAGCAACAGCAGATCGCGCTCATGATCGCTCAGATGCAGCAACAAGTTTTACAGCAGCAGCCAGGTCTGGCAGGGAGACATCCTGCTCTGCCGTTTACTGCAGTGCAGCAACAACAGCAGCAATCATTAATCCAGCAACAACAGCAGCAACAGCCGTCTCCTACTGCACAACAAAAAGGTAATAAACCTGCAACGAGTGAGAAACCAACGAGTGAGCCTGCACAGAATAAGACAACAGACATTGTTAAATCTCAGCCAAATGAACCTTCTAACGTTCCACCAGCGACAACGGAAGAACCAACCAAACAACCTTCTCCCGTCCCGCAATCTCGATTAACACAATGGAAACAGCCGTTATTACAGGATCCTTCAGCTGTCACTCAGCCTTCAGTCACTAGTAGCATACCTACCCCAGTGGACTCTAATCCTCAAATAGTTTCAACGTCTTCACAGTCCACGTCTTCTGTGCTTGCTAGTGTTGTGTCAGCTCCTTCCATTTTGACTAATGAAGTATCCGACCCGTCAGCTCCCAACAGCAACAATGTCTCTCCGCGTACTAGGATTCCGGATCCAGTCTCGAGCAGGTGGGGTGTGGACGCAGGTCCCAAGCTATCTGCGGACCCACCTGAGTTTAAACCAGGTGTCCCGTGGCGTCCCGCTCCAAGAAACGAGAAACGGGACGATGGAAGGGACGTCGTTTCTCCTAGTACTGTGGAAGTTTCAAGTCGCACGTCATCCAGTAGTAGCGATTCTCAAACAGATAGTTGGCCGAATCCGGGCAACCAACCTGTTAGTGCACCTAGCAGTGTACCTCCTGTGAACACTGGAAAAGTGGCGGATGACGCTGTCAGCGCCACTACTACTAATTCCGGCTTCTCTGGACTGTCGATCAATAACAGTACATTCGAATCAAGTGCGATTGATTTTGGACGGAGCTCAACTCATTGGCAATCGACGGAAAGTAAAGCTCCACCCCAACTTCCTCAAGGAACAAACAAACTGGCTTCCAGTGCTGCATCACTGTTAAGACCTCCCCCGGGTCTGGGATCTGAAAAGTCCCTGCCCGAGTCCCCCTTGTTTGATGATGAACCTCCAGCTTGGTTGAAGAGCTTAATAGACGGCTCCAGCCTGGCTGGCGACAAAACTCAGCCTGAATTTCAGTTCAGTCGTTTTGGTTTTGCTAACAATCCTGCGCCGTGGAGTCCACGAGATGCAAGCCCACAGCCTTTTAGTCCCTTGACACCTAATCCTCAGCCTTGGGCTGCTGTGGGGGGTCCTGCCCCTACATTATCATCCTCAGGATCTGCATTGTCAATGGCAACCAGTGAGATTGTTCGGAGCGGAAGTGTCAGTGCTTCTGAGCCATCTAACTTGCAGAATTCGGGAATTATTTGGTCTACAAATCAACCCATCCCTAGTGCTGAAGAAAAGCTACCAGGGACTCTCCCTGGGGCCTCTGTTCCTGCTGTATCCGCAGCCAGCGGTGTCGCACCATCCAGGAACACGGTCAATTCGATGTCAACGTGGTTGGTTCTCCGCAATTTGTCACCAAGGATGGACCCGAAAACTCTCCGCCCCCTGTGTGAGAGGCATGGACCACTACTGACCTTTCAGCTTAATCTCCGTCATGGCAACAGCTTGATACGTTACGGTAGCATGGAGGAAGCTGCCAAGGCGAGGGCAGCACTCAATGGCTTGATGCTTGGTGGGACGCAGGTAGTGGCAGACTTCGCCACAGACAGTGACATCGGCAGTTTTTTTGAGCAAACCATGGACTGGAGCGCCAACCCATTTCCTAGCAACACTTACGGAAATCAATGGTCTTTCCAAAATGTCCTTGGATCCGCTGCAGCCAGTGACAGTATTCAACCTGCAGCTAAAGTACCGACTGCAAAGAACCAACCACCAGTAACAACCACTGAGCAGCATGTCCCTAAAATCAATAACCCATCTCCTGGAATGCAGTGGGGTGCTGCCGTAGGGGCGTTGCCCTCACAGGGCCTCCCTCCCGGCGAACAGTCCAAAATGAACCCAACCACTCCTCAGTGGGGAACCGGCTCGCAAAGCAGCGAGCAGCCTGGTACCAAGCCTAATACTGGAACTCCCGGCATGCCTTGGGGTAGTTCTCCGGGAGCCACCCCGGTCCCGTCATACTTGTGGGGCTCAGGCCCCTCGCAGCAGCCAGTGCATGCAGGAAATTTTTCCCAGGTCCCCAGCATGTGGTCCTTTCCAGCTGGGGTCCCGCGTGACGTGGAACCTCAGTCAGGATCTGGGGATGGGCTGGTTAGTCCCTCCATGACCACGTTCCTTCCGCCGGGGCTTCTGAATGGAGGAGGAGATCCAGTGTGA

Transcript

evm.model.contig_44696.1

ATGACGCAAACCAGCGATACTCTTTCTAAAGAAGATAATGAGCAACAGAATAAGACCTTAGAAACTCAATATGCAGCTAAAACGGATGAAACACAACAGGGCTCTAACTCGAAACCAAATGCACCCAcaacaaaaagtgaaaaaccaCCTTTGTCTGTAGCTGGGCCTTCAAAGCCCTCTAATGGACAAGCTCAGTTGCCAGGAAACGGTAAAAGAACAGGTCCGCCTTTAATACCTCCTGCTCCAGGCCCTGGGGTACAGGCACCCTTGAGACCTCCTCTGGCACATCCCTTACTTCACCCTCAGCTGGTTCAGCAGTTTCATCTTCAGCAGTTACGGATGGCTCAGGGAGGACTACTTCAGCCTCCCTTCACTCCTCAACAGTTTGCCATGTTACAGCAGATCGCTCAGCTTCAGCTCGTTCAGCAGCGTCTGGCTGCACAGTCTGTTGCCCAGCAACACATGGGACAGAAACAACAAGTAGTTCCTCAACAACAGCTGTATCAACAGCAACAGCAGATCGCGCTCATGATCGCTCAGATGCAGCAACAAGTTTTACAGCAGCAGCCAGGTCTGGCAGGGAGACATCCTGCTCTGCCGTTTACTGCAgtgcagcaacaacagcagcaatcATTAAtccagcaacaacagcagcaacagccGTCTCCTACTGCACAACAAAAAGGTAATAAACCTGCAACGAGTGAGAAACCAACGAGTGAGCCTGCACAGAATAAGACAACAGACATTGTTAAATCTCAGCCAAATGAACCTTCTAACGTTCCACCAGCGACAACGGAAGAACCAACCAAACAACCTTCTCCCGTCCCGCAATCTCGATTAACACAATGGAAACAGCCGTTATTACAGGATCCTTCAGCTGTCACTCAGCCTTCAGTCACTAGTAGCATACCTACCCCAGTGGACTCTAATCCTCAAATAGTTTCAACGTCTTCACAGTCCACGTCTTCTGTGCTTGCTAGTGTTGTGTCAGCTCCTTCCATTTTGACTAATGAAGTATCCGACCCGTCAGCTCCCAACAGCAACAATGTCTCTCCGCGTACTAGGATTCCGGATCCAGTCTCGAGCAGGTGGGGTGTGGACGCAGGTCCCAAGCTATCTGCGGACCCACCTGAGTTTAAACCAGGTGTCCCGTGGCGTCCCGCTCCAAGAAACGAGAAACGGGACGATGGAAGGGACGTCGTTTCTCCTAGTACTGTGGAAGTTTCAAGTCGCACGTCATCCAGTAGTAGCGATTCTCAAACAGATAGTTGGCCGAATCCGGGCAACCAACCTGTTAGTGCACCTAGCAGTGTACCTCCTGTGAACACTGGAAAAGTGGCGGATGACGCTGTCAGCGCCACTACTACTAATTCCGGCTTCTCTGGACTGTCGATCAATAACAGTACATTCGAATCAAGTGCGATTGATTTTGGACGGAGCTCAACTCATTGGCAATCGACGGAAAGTAAAGCTCCACCCCAACTTCCTCAAGGAACAAACAAACTGGCTTCCAGTGCTGCATCACTGTTAAGACCTCCCCCGGGTCTGGGATCTGAAAAGTCCCTGCCCGAGTCCCCCTTGTTTGATGATGAACCTCCAGCTTGGTTGAAGAGCTTAATAGACGGCTCCAGCCTGGCTGGCGACAAAACTCAGCCTGAATTTCAGTTCAGTCGTTTTGGTTTTGCTAACAATCCTGCGCCGTGGAGTCCACGAGATGCAAGCCCACAGCCTTTTAGTCCCTTGACACCTAATCCTCAGCCTTGGGCTGCTGTGGGGGGTCCTGCCCCTACATTATCATCCTCAGGATCTGCATTGTCAATGGCAACCAGTGAGATTGTTCGGAGCGGAAGTGTCAGTGCTTCTGAGCCATCTAACTTGCAGAATTCGGGAATTATTTGGTCTACAAATCAACCCATCCCTAGTGCTGAAGAAAAGCTACCAGGGACTCTCCCTGGGGCCTCTGTTCCTGCTGTATCCGCAGCCAGCGGTGTCGCACCATCCAGGAACACGGTCAATTCGATGTCAACGTGGTTGGTTCTCCGCAATTTGTCACCAAGGATGGACCCGAAAACTCTCCGCCCCCTGTGTGAGAGGCATGGACCACTACTGACCTTTCAGCTTAATCTCCGTCATGGCAACAGCTTGATACGTTACGGTAGCATGGAGGAAGCTGCCAAGGCGAGGGCAGCACTCAATGGCTTGATGCTTGGTGGGACGCAGGTAGTGGCAGACTTCGCCACAGACAGTGACATCGGCAGTTTTTTTGAGCAAACCATGGACTGGAGCGCCAACCCATTTCCTAGCAACACTTACGGAAATCAATGGTCTTTCCAAAATGTCCTTGGATCCGCTGCAGCCAGTGACAGTATTCAACCTGCAGCTAAAGTACCGACTGCAAAGAACCAACCACCAGTAACAACCACTGAGCAGCATGTCCCTAAAATCAATAACCCATCTCCTGGAATGCAGTGGGGTGCTGCCGTAGGGGCGTTGCCCTCACAGGGCCTCCCTCCCGGCGAACAGTCCAAAATGAACCCAACCACTCCTCAGTGGGGAACCGGCTCGCAAAGCAGCGAGCAGCCTGGTACCAAGCCTAATACTGGAACTCCCGGCATGCCTTGGGGTAGTTCTCCGGGAGCCACCCCGGTCCCGTCATACTTGTGGGGCTCAGGCCCCTCGCAGCAGCCAGTGCATGCAGGAAATTTTTCCCAGGTCCCCAGCATGTGGTCCTTTCCAGCTGGGGTCCCGCGTGACGTGGAACCTCAGTCAGGATCTGGGGATGGGCTGGTTAGTCCCTCCATGACCACGTTCCTTCCGCCGGGGCTTCTGAATGGAGGAGGAGATCCAGTGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033503 all species →	Domain	Gawky, RNA recognition motif	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR052068 all species →	Family	GW182 domain-containing protein	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13020 all species →	TRINUCLEOTIDE REPEAT-CONTAINING GENE 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035278 all species →	Biological Process	miRNA-mediated gene silencing by inhibition of translation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0035195 all species →	Biological Process	miRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0060213 all species →	Biological Process	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18412	TNRC6, GW182; trinucleotide repeat-containing gene 6 protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.