Gene detail

Detailed information of evm.model.contig_45185.7 in Platygyra sinensis

Genomic Location: contig_45185:74614...81837
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_45185.7

ATGGTGCTCGCAGAAGGTTGGTTTATCAAACGTGGAGAGGATCTAATTGCTGCCTTGAAATCCTCATCCACAAATGAAGAACAAGACGAGGCTGTTGCCAGTCACATCCAATGGATGGAATCAAACGATTCCACAACTATTCCAGAGTTTGATTCGAATCTGGAGTGGTTGAACTGCACTAACCCTCTATCATTCAAAGACCAACTTCAAGGGAAATTGTGTGTTTTGGATTTCTTTACCTACTGCTGCATAAACTGTATGCATATCTTACCCGATCTGGAAGCGTTGGAACATCTTTACTCTGAGAAAGATGGTCTTGTGATACTCGGGGTTCACTCCGCAAAATTCGAGAACGAAAAATCTTCCACGAACATTCTAAGGGCGATATTGCGGTATGATATCAGGCATGCCGTTGTAAATGATTCCGAGGCAAAGTTATGGCACACGTTGTCGGTTCAGTGTTGGCCAACTTTGGTTATTGTGAGTCCAGAGGGAAAAATCCTTCTTAGTTTGGTGGGGGAAGGACACAGGGAGACACTTTTGAAGTTTGTGGGATCAGCTTTGAAATTTTACGAACAGAAAGGAAAAGTGAAAGACCATTCAATTGGTGTCTCTCTGGTTAAAGACACCCTACCACTGACAAGGCTGTCATTTCCTGGAAAAATAGCTACAGACAAAGTGGGGGAAAGATTGGTAGTGGCTGACACAGGACATCATAGAATTCTTTTAATCAACAAAGCAGGAATTATTTTGAATGCTATTGGTGGAGGTGAAAAGCATGAAGCTGGATTTGTGAATGGCTCATTTCAAGAAGCAAGGTTTCATTCGCCTCAAGGAGTAGCCTTTGACAAGGAAATTATATTTGTTGCTGATACAGAGAATCATGCAATCAGGAAGATTGATCTAGAGAAAGGGACAGTCATTACAGTTGCTGGCAATGGTAAGCAAGGAAATGACAAGGAAGGAGGAAGCATTGGAACATCACAATGCATCAGTTCACCATGGGACGTTACTGCTGGTCCTCCACCTGCAGGAAGTCAAACTGCAGAGGATGATGGTGTTAGAGATGTTCTCTACATTGCCATGGCTGGCACACATCAAATCTGGGCATTATATTTAAAGGATAGCACATGGCTCAAAGGAGGTTCCAAGGTACAAGGGACATGCCTTCGTTTTGCTGGCAGTGGTGCAGAAGAAAATCGCAATAACAGTTACCCACACAAGGCTTCCTTTGCCCAACCATCAGGCATCAGTCTTGCACTGGAAAAACCTTTCAGGTGCTTGTTTGTGGCAGACAGTGAGAGCAGCAGTGTAAGGATGGTTGATGTGGGCGGTGGTGGAACAAAGTCTCTGGTAGGAGCAGACAGGGACCCAACAAATCTGTTTGCATTTGGTGATCAAGATGGTAAAGGTGTTGATGTTAAGCTGCAGCATCCTTTAGGCGTGGCCTGGAATCCGCACTCGCAGATGTTATACGTGGCAGATTCCTACAACCATAAGATCAAAGTCATCGACCCCTCAAAGAAGACCTGTGAAACATTTCTGGGTACTGGCAAACCCGGCGGATTATCATCTGAAGAAGGCGGCATACAATTTGATGAACCGGGTGGACTATGTGTCAGTCCAGACGGACAGTTCTTATACGTGGCAGACACTAACAACCACGCCATTCGAGTCATCGACGTAAAAACGAAAACAGTATCACAGCTTAATATCGTGGAACACACGCAAATTTCGAAGGACCGATCGGACGGCCAATCAAATGAAAAGCGCACTGTGGCAAAACGGTTAACTTCGAAAAGAACGCCAGTCACGTATAAAGAACCAGTTCACGTGGCCAGTGGGTCGTGCCTAGACATAAGGCTTAGCATTAGTCTCCCCGCGGGATGTTACTTGACAAAGGGAGTGACCAGTGATTGGCAGGTCGTGGTGTTTGAGCGACAAGAAGACGAAGAAGTTTTCCAGAAGCATTTTGAAGTGACGCCGCCGTCTGGTGTTCTAACCGAAGAATCCCTTTGTGTTGTCTGCAAGATCCGACCGCCAGATGACAACTGGCAACCACAAACCGTCGCGCGGATTGAGGCAGTAATTTATTTCTGTGAGCCGAGCGGAACATGCAGAATGGAGGGACTTGTTTACGAAGTTCCGTTGCTCAAAACAGACGGAGAGGGAGAGAGTTCACTAGAGATAAACCACGACTGCAAACTATAG

Transcript

evm.model.contig_45185.7

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13905 all species →	Thioredoxin_8	Thioredoxin-like	Domain	Interproscan
PF01436 all species →	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR012336 all species →	Domain	Thioredoxin-like fold	Interproscan
IPR045302 all species →	Domain	NHL2, NHL repeat domain	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46388 all species →	NHL REPEAT-CONTAINING PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_45185.7.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.