Gene detail

Detailed information of evm.model.contig_45486.1 in Platygyra sinensis

Genomic Location: contig_45486:1776...7395
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_45486.1

ATGACGCTGTCTGGTCACGCAGAGGCTGTCTCCAGTGTACTGTGGATGGATCAAAGCACGGTGTGCAGTGCAGGCTGGGATCACACCATTCGAATGTGGGACCTTTCAGCTGGAGTTAACAAACAGACGTTGAGCGGCTCCAAAGTATTTTGCGACATCTCTTTCTCTCCTCTCTCAAGACTTGTCGTTTCTGGGAGCGCTGACAGACATGTTAGATTGTGGGATCCCAGAACTACTGACGGATCCATAGTAAAACACACGCTGACGTCACATCAAGGCTGGGTGTCTTCAGTAGCGTGGTCACCAAGCAGCGAGTTCGAACTGATTTCTGGGTCATACGATACAACAGTCAAACTCTGGGACACACGGAGCTTAAGTGCACCGCTGTTCACAATGACCCAACATCAGGATAAAGTTATGTGCGTGAACTGGACTCTACAAACTGTGCTAATTGGTGATGTGATCGGAAAATTAACGGTGAAAAACCCTGAAACTAAGCGTCCTGAACTGACAATTTGCGACCACCTCAACATAAGTGTTTGTCCTCTGACTGAAGAGAGTAAATCGTTTACCGTGACTGTCTACAATCCCCTTGCCCGGGACCTAACCCCGTATGTCCGCCTGCCAGTGGCGATGGCATCAATGGCTGTGTTTGGTCCACAAGGTAACCCTGTTGAAACGCAAGTGCTACCGATTTCCGATGCTACGAAACAGCTGCGCAAAAATCAGAACCAGAAACAAAGCAATTCATCTTTCGAGCTTGTTTTCATGGCCAAAGTCCCTGCTCTAGGGTTTGCCACCTACTTCGTGAACTCGACAAAGACCAAGCCATCGTCCTGGGTAAAGAAGTTCTTCCGGGCCACTCCCAAGCACACTGACAGACACTCCGGTGAAGTCTCCATCGAAAACGAGTTTGTTAAACTTACGTTCGCTCAGGACACGGGCCATCTAACGAGCATGACTGATTTGACTTCCAAAGTCGTCACCGCATTGAGCCAGACATTTTACTGGTACAACGGTAGTATGGGAAACGATAGCAGCCATCAGGCGTCCGGGGCGTACATCTTCAGACCCAACAGTAGCCGTGTGATTCCCATCTCCAGTGGCAACAAGATGGACATCTTTAAAGGTCCCTTGGTAGAGGAGGTACGGCAAGTGATCTCTCCGTACATCAGTCAGGTGATCAGGCTGTACGCTGGTCAGCGGCATGCTGAGTTTGAGTACACTGTGGGGCCGATACCTGTGGGGGATAAGTGGGGAAAAGAAATCATCACCCGATTTGATACAGATATCAAGTCCGACCAGCTCTTCTACACTGATGCTAACGGCAGAGAAATGCAAGAGCGCAAGAGGAATTACCGACCGACCTGGAAACTCAAGATCACCGAGCCAGTTGCTGGAAATTATTACCCGGTTAACAGTCGAATGTACATCAACGACAGCGCTAAACAGCTGACAGTCCTGACTGACAGATCCCTTGGCGGGTCCAGCATGAAGGACGGCTCTATGGAGATCATGCTGCACAGGCGGCTTCTCGTAGATGACCATAGAGGGGTGAATGAGCCGCTCAACGAGACGGGGATCCTCGGTAAGGGTCTGATAGTCCGCGGGAAGCTGTGCCTGACTCTAGCACCACCCAAGTCATCTGGTGCACTGCATCGTGAACTCGGTGAGAAGCTCCTTCTGGAACCCGTCCTGGCCTTTGCGCCTAACAGCCTCACTTTCAATGAGTGGACGAGCCAGTTTAACTCGTTATACAGCGGTATGACTCGACAGCTTCCCGCCAATGTTCATTTGCTGACTCTGGAGACGATGAAGGACACCGTGTTGATCCGCGTGGAACATCAGTTTGAGGCTGGAGAAGATCCCAAGCTCTCACAGCCTGTCAACATCTCACTCGCGGAACTTTTCACCGACTTTGACATCGAGTCCATGACTGAGATGAACTTGTCTGCCAATCAGCTTCTGAAGGATAAAAAGCCCCTCCACTGGAATATCCAATCGAAGAAGAACGTAGAAGAAAACAAGACCAAGAAGAAGAGGCTGCAACGCGCCGCTACTGATATGAACGTGGAGCTCACTCCAATGCAGATCCGTACCTTCAAGGCTGTTATCAAACGTCACGGAATTTCCGGTTATACTAATATGTACTAA

Transcript

evm.model.contig_45486.1

ATGACGCTGTCTGGTCACGCAGAGGCTGTCTCCAGTGTACTGTGGATGGATCAAAGCACGGTGTGCAGTGCAGGCTGGGATCACACCATTCGAATGTGGGACCTTTCAGCTGGAGTTAACAAACAGACGTTGAGCGGCTCCAAAGTATTTTGCGACATCTCTTTCTCTCCTCTCTCAAGACTTGTCGTTTCTGGGAGCGCTGACAGACATGTTAGATTGTGGGATCCCAGAACTACTGACGGATCCATAGTAAAACACACGCTGACGTCACATCAAGGCTGGGTGTCTTCAGTAGCGTGGTCACCAAGCAGCGAGTTCGAACTGATTTCTGGGTCATACGATACAACAGTCAAACTCTGGGACACACGGAGCTTAAGTGCACCGCTGTTCACAATGACCCAACATCAGGATAAAGTTATGTGCGTGAACTGGACTCTACAAACTgtgctAATTGGTGATGTGATCGGAAAATTAACGGTGAAAAACCCTGAAACTAAGCGTCCTGAACTGACAATTTGCGACCACCTCAACATAAGTGTTTGTCCTCTGACTGAAGAGAGTAAATCGTTTACCGTGACTGTCTACAATCCCCTTGCCCGGGACCTAACCCCGTATGTCCGCCTGCCAGTGGCGATGGCATCAATGGCTGTGTTTGGTCCACAAGGTAACCCTGTTGAAACGCAAGTGCTACCGATTTCCGATGCTACGAAACAGCTGCGCAAAAATCAGAACCAGAAACAAAGCAATTCATCTTTCGAGCTTGTTTTCATGGCCAAAGTCCCTGCTCTAGGGTTTGCCACCTACTTCGTGAACTCGACAAAGACCAAGCCATCGTCCTGGGTAAAGAAGTTCTTCCGGGCCACTCCCAAGCACACTGACAGACACTCCGGTGAAGTCTCCATCGAAAACGAGTTTGTTAAACTTACGTTCGCTCAGGACACGGGCCATCTAACGAGCATGACTGATTTGACTTCCAAAGTCGTCACCGCATTGAGCCAGACATTTTACTGGTACAACGGTAGTATGGGAAACGATAGCAGCCATCAGGCGTCCGGGGCGTACATCTTCAGACCCAACAGTAGCCGTGTGATTCCCATCTCCAGTGGCAACAAGATGGACATCTTTAAAGGTCCCTTGGTAGAGGAGGTACGGCAAGTGATCTCTCCGTACATCAGTCAGGTGATCAGGCTGTACGCTGGTCAGCGGCATGCTGAGTTTGAGTACACTGTGGGGCCGATACCTGTGGGGGATAAGTGGGGAAAAGAAATCATCACCCGATTTGATACAGATATCAAGTCCGACCAGCTCTTCTACACTGATGCTAACGGCAGAGAAATGCAAGAGCGCAAGAGGAATTACCGACCGACCTGGAAACTCAAGATCACCGAGCCAGTTGCTGGAAATTATTACCCGGTTAACAGTCGAATGTACATCAACGACAGCGCTAAACAGCTGACAGTCCTGACTGACAGATCCCTTGGCGGGTCCAGCATGAAGGACGGCTCTATGGAGATCATGCTGCACAGGCGGCTTCTCGTAGATGACCATAGAGGGGTGAATGAGCCGCTCAACGAGACGGGGATCCTCGGTAAGGGTCTGATAGTCCGCGGGAAGCTGTGCCTGACTCTAGCACCACCCAAGTCATCTGGTGCACTGCATCGTGAACTCGGTGAGAAGCTCCTTCTGGAACCCGTCCTGGCCTTTGCGCCTAACAGCCTCACTTTCAATGAGTGGACGAGCCAGTTTAACTCGTTATACAGCGGTATGACTCGACAGCTTCCCGCCAATGTTCATTTGCTGACTCTGGAGACGATGAAGGACACCGTGTTGATCCGCGTGGAACATCAGTTTGAGGCTGGAGAAGATCCCAAGCTCTCACAGCCTGTCAACATCTCACTCGCGGAACTTTTCACCGACTTTGACATCGAGTCCATGACTGAGATGAACTTGTCTGCCAATCAGCTTCTGAAGGATAAAAAGCCCCTCCACTGGAATATCCAATCGAAGAAGAACGTAGAAGAAAACAAGACCAAGAAGAAGAGGCTGCAACGCGCCGCTACTGATATGAACGTGGAGCTCACTCCAATGCAGATCCGTACCTTCAAGGCTGTTATCAAACGTCACGGAATTTCCGGTTATACTAATATGTACTAA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF21260 all species →	Laman-like_dom	Lysosomal alpha-mannosidase-like, central domain	Domain	Interproscan
PF07748 all species →	Glyco_hydro_38C	Glycosyl hydrolases family 38 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR048534 all species →	Domain	Lysosomal alpha-mannosidase-like, central domain	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR050843 all species →	Family	Glycosyl Hydrolase Family 38	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR011682 all species →	Domain	Glycosyl hydrolase family 38, C-terminal	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR011013 all species →	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11607 all species →	ALPHA-MANNOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004559 all species →	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0006013 all species →	Biological Process	mannose metabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_45486.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.