Detailed information of evm.model.contig_45489.3 in Platygyra sinensis

Genomic Location: contig_45489:20820...30775
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan
PF08154
all species →		NLENLE (NUC135) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR020472
all species →		RepeatG-protein beta WD-40 repeatInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR012972
all species →		DomainNLEInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR028599
all species →		FamilyWD repeat WDR12/Ytm1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19855
all species →		WD40 REPEAT PROTEIN 12, 37Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0042254
all species →		Biological Processribosome biogenesisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.contig_45489.3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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