Gene detail

Detailed information of evm.model.contig_47169.2 in Platygyra sinensis

Genomic Location: contig_47169:8248...19622
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_47169.2

ATGCGTCTTTTGTGTGGAATTCTAGTGGTGTTCCCAATTGTAATCTTATCGAATCGAGCACTCGCTGCGGACAAGAAGGACACAACGAAGTTGCAGATTGGCGTGAAGAAGCGAGTTGCAGACTGCCAGACGAGATCTAAGAGTGGAGATACGCTGCACATGCATTACAAAGGTTCACTGGAAGATGGAACAGAGTTTGACAGCAGTATTCCTCGAGGAGAACCATTTGTCTTTACCTTAGGTGCAGGACAAGTGATTAAAGGTTGGGATCAAGGACTTTTAAACATGTGTGAAGGAGAGAAGAGGAAGCTTCGTATTCCTCCAGATCTTGGCAAGGATGAAAAACCGGATAAGTTGAAAGTAAACATGTTACTTAATTGTGTTGGACCTGAAGCGATTGAGGAATACAGTCATTTTGTTTACAATGAAGGAGAAGAGAAGGAAAACTATGCAGATGTGTGCAAGAAATTTAAGGAACTCTGCGAAGGAGCCAGGAATGTGATATATGAAAGGTTAGTGTTTAATCAGCGTAACCAGAAAGAGGGAGAGAGGATTGATAATTATGTCAGTGAACTGAAACGGTTGTCGTTGACGTGTGATTTTGGCGATCTGCGAGATTCGCTAATAAGGGATCGAATTGTGGGAGCAGAATTGCAAAAGTACAAGTTTAGCACACCAGCAGGTGCTGGAACTGAACATTCAATAGGAATTCAGCATGTTAATAAGGTAAATGAACAGGACAAGAAACCCCCTCGTTCTTGTAAGTTTTGTGGTTACAAGCATCCATTTACTAAACCCTCTCGATGTCCATCATTTGGAAAATTGTGTCTTAAGTGTAAACAAAAAGGTCATTTTGCCCAAGTGTGCCCAGCAAATGTCAAAGGGGGCTCCCAAGTTGATGTAGTGCAACACACCCAGAGTTCAAGTCAGGAAGTACCTACGTATTTTGAATCTATTGAACTTGGAAGTGTTCTGGACGTCAGGAAATCCAGAAAGAGCCTGGTAACTATTCAGATTGGAGGACAGGCGGTTGAAATCAAAGTAGACACAGGTGCAGATGCAACGGTCATTCCGTATCATCTGTATGAGAAAATTACCAAGAAACCTCTCCAGCAGATTCAGCAACCTTTGAAGGGGTGGCTTGCAACTAAGCCTGTTCATCCGAGAGGCTGTGTACGCCTTCCTACTCGGTACAAGAACCGTCAAATGGATTTGCTGTATCTTGTTGTTGATGGAAACTTTACACCCTTACTGGGTTGTGATGCCTGTTTGGATTTAGAAGTCCTTAAGTTTATGAATCTCCAACTGATTGATTCGCCAGAGCCCGATCGAGCCACATCAAAAACACAGGGAGCAAGTGAAGACCAGACTATGTTCCAAAAAGATTCAGTTTTATGTGGATACCAAGATTGTTTCAGTGACAAACCTGGAAAACTTCCAAACAAAGTGCATCTGGAAGTTGATGCTTCAGTGCCACCAGTTGTACACCCTCCTAGGAAAATTCCAGTTGCTATGTTGAAACCTGCAAGAGAAAAGCTCAAAGAGATGGAAGAAGCTGGTATTATTGTGAAAGAGGATGAGCCTACACCTTGGGTTTCATCAATGCTAGTTATTGACAAAAGGAAGGTGAACGATAAAAGAAAGAACACCCCACCTTCAAAGGATGATCTTCGAATTTGTATTGACCCCAGAGACCTTAACAAAGCGTTGAAACGTCCCCACTATCCAATGGTTACTGTCAAAGAAGTTGCAAACCGACTTGCAGGTGCTAAGAGTTTCACTTCACTTGATGCATGCAGTGGATACTGGCAGCTCCCTGTAGATGATGAGAGTTCCAAGCTTTTGACTTTTAACACTCCGTGGGGGCGATATGGATTTACAAGACTCCCTTTTGGTATCTCACCAGCCCCTGAACTCTACCAAAGGGAGATGGACAGACTCTTTGAAGGAGTCCCTGTTGAAATTATAGTAGATGATTTCCTAGTGCATGGTAAAGACCAAACTGAAGTTGATGAGAAGATGAGAAGAGTGTTGGACAGGAGCAGAGAGGTGGGCTTGAAGTTTAACCCCAAGAAAGTGAAACTCAGAGTTCCAGAAGTGAGCTATGTTGGACACCTATTCTCTGCTGAAGGCTTGAAACGGGATCCTGAGAAGATCAGAGCCATCAATGAAATGCCACCCCCAGTAGATAAGGAAGGTGTCCTTCGCATACTAGGAACTGTCAATTATTTAGACAAGTTCATTGAACACAAGGCTGACATACAAGAGCCCATTTCACAACTTACACAGGTTCAACAATATTACAACACATGTTTTGTGTTTTTTTGTTCCATCTTTTCCACAATGTTGTCAATAAGAGAAAGATTATTTTTTAGAGTACTTGATAGCTTGTTGACTTGA

Transcript

evm.model.contig_47169.2

ATGCGTCTTTTGTGTGGAATTCTAGTGGTGTTCCCAATTGTAATCTTATCGAATCGAGCACTCGCTGCGGACAAGAAGGACACAACGAAGTTGCAGATTGGCGTGAAGAAGCGAGTTGCAGACTGCCAGACGAGATCTAAGAGTGGAGATACGCTGCACATGCATTACAAAGGTTCACTGGAAGATGGAACAGAGTTTGACAGCAGTATTCCTCGAGGAGAACCATTTGTCTTTACCTTAGGTGCAGGACAAGTGATTAAAGGTTGGGATCAAGGACTTTTAAACATGTGTGAAGGAGAGAAGAGGAAGCTTCGTATTCCTCCAGATCTTGGCAAGGATGAAAAACCGGATAAGTTGAAAGTAAACATGTTACTTAATTGTGTTGGACCTGAAGCGATTGAGGAATACagtcattttgtttacaatgaaGGAGAAGAGAAGGAAAACTATGCAGATGTGTGCAAGAAATTTAAGGAACTCTGCGAAGGAGCCAGGAATGTGATATATGAAAGGTTAGTGTTTAATCAGCGTAACCAGAAAGAGGGAGAGAGGATTGATAATTATGTCAGTGAACTGAAACGGTTGTCGTTGACGTGTGATTTTGGCGATCTGCGAGATTCGCTAATAAGGGATCGAATTGTGGGAGCAGAATTGCAAAAGTACAAGTTTAGCACACCAGCAGGTGCTGGAACTGAACATTCAATAGGAATTCAGCATGTTAATAAGGTAAATGAACAGGACAAGAAACCCCCTCGTTCTTGTAAGTTTTGTGGTTACAAGCATCCATTTACTAAACCCTCTCGATGTCCATCATTTGGAAAATTGTGTCTTAAGTGTAAACAAAAAGGTCATTTTGCCCAAGTGTGCCCAGCAAATGTCAAAGGGGGCTCCCAAGTTGATGTAGTGCAACACACCCAGAGTTCAAGTCAGGAAGTACCTACGTATTTTGAATCTATTGAACTTGGAAGTGTTCTGGACGTCAGGAAATCCAGAAAGAGCCTGGTAACTATTCAGATTGGAGGACAGGCGGTTGAAATCAAAGTAGACACAGGTGCAGATGCAACGGTCATTCCGTATCATCTGTATGAGAAAATTACCAAGAAACCTCTCCAGCAGATTCAGCAACCTTTGAAGGGGTGGCTTGCAACTAAGCCTGTTCATCCGAGAGGCTGTGTACGCCTTCCTACTCGGTACAAGAACCGTCAAATGGATTTGCTGTATCTTGTTGTTGATGGAAACTTTACACCCTTACTGGGTTGTGATGCCTGTTTGGATTTAGAAGTCCTTAAGTTTATGAATCTCCAACTGATTGATTCGCCAGAGCCCGATCGAGCCACATCAAAAACACAGGGAGCAAGTGAAGACCAGACTATGTTCCAAAAAGATTCAGTTTTATGTGGATACCAAGATTGTTTCAGTGACAAACCTGGAAAACTTCCAAACAAAGTGCATCTGGAAGTTGATGCTTCAGTGCCACCAGTTGTACACCCTCCTAGGAAAATTCCAGTTGCTATGTTGAAACCTGCAAGAGAAAAGCTCAAAGAGATGGAAGAAGCTGGTATTATTGTGAAAGAGGATGAGCCTACACCTTGGGTTTCATCAATGCTAGTTATTGACAAAAGGAAGGTGAACGATAAAAGAAAGAACACCCCACCTTCAAAGGATGATCTTCGAATTTGTATTGACCCCAGAGACCTTAACAAAGCGTTGAAACGTCCCCACTATCCAATGGTTACTGTCAAAGAAGTTGCAAACCGACTTGCAGGTGCTAAGAGTTTCACTTCACTTGATGCATGCAGTGGATACTGGCAGCTCCCTGTAGATGATGAGAGTTCCAAGCTTTTGACTTTTAACACTCCGTGGGGGCGATATGGATTTACAAGACTCCCTTTTGGTATCTCACCAGCCCCTGAACTCTACCAAAGGGAGATGGACAGACTCTTTGAAGGAGTCCCTGTTGAAATTATAGTAGATGATTTCCTAGTGCATGGTAAAGACCAAACTGAAGTTGATGAGAAGATGAGAAGAGTGTTGGACAGGAGCAGAGAGGTGGGCTTGAAGTTTAACCCCAAGAAAGTGAAACTCAGAGTTCCAGAAGTGAGCTATGTTGGACACCTATTCTCTGCTGAAGGCTTGAAACGGGATCCTGAGAAGATCAGAGCCATCAATGAAATGCCACCCCCAGTAGATAAGGAAGGTGTCCTTCGCATACTAGGAACTGTCAATTATTTAGACAAGTTCATTGAACACAAGGCTGACATACAAGAGCCCATTTCACAACTTACACAGGTTCAACAATATTACAAcacatgttttgtgtttttttgttccATCTTTTCCACAATGTTGTCAATAAGAGAAAGATTATTTTTTAGAGTACTTGATAGCTTGTTGACTTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00254 all species →	FKBP_C	FKBP-type peptidyl-prolyl cis-trans isomerase	Domain	Interproscan
PF00077 all species →	RVP	Retroviral aspartyl protease	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001179 all species →	Domain	FKBP-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR018061 all species →	Domain	Retropepsins	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR046357 all species →	Homologous_superfamily	Peptidyl-prolyl cis-trans isomerase domain superfamily	Interproscan
IPR001995 all species →	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003755 all species →	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_47169.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.