Gene detail

Detailed information of evm.model.contig_47256.7 in Platygyra sinensis

Genomic Location: contig_47256:60767...67830
NR annotation: no NCBI-NR hit recorded
Species abbreviation PSINE2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_47256.7

ATGTCTTGTGAATATCGAATGCCAGACCTGATAAGTAAAAAGAGGGACGGAGACGAGCTATCGGAAGCTGAAATAAACCACTTTGTGAAGTCTGCAACGAATGGTGCCTGCGAAAGTCAGATCGGCGCAATGCTCATGGCCATGTACTTGAAGGGACTGAACCGTGATGAAACAGTGAGTCTTACCAAGGCAATGCTTTCGTCTGGAATATCTTTGCAGTGGCCCGAGGAATGGCAAGGCAGTGTTGCAGATAAACATTCTACAGGGGGAGTTGGTGACAAAGTCAGCCTCGCGCTAACTCCAGCTTTAGCAGTCTGCGGAGTGAAAGTACCGATGATTTCAGGTCGTGGTCTAGGCCACACTGGCGGAACCCTTGACAAGTTAGAGTCAATACCAGGCTTTCAAGTGAATCTGGACTCCACACAAATGTGCAGTGTTTTGGGAAAAGTTGGTTGTTGTATTGTGGGTCAGACGGAGGCACTGGTCCCAGCTGATCGGGTACTGTATGGTATAAGAGATGTGACAGCAACGGTAGATTCAATGCCTTTGATAACAAGTTCTATCTTATCAAAGAAAGCAGCTGATCCCAGTGCTTCAAAAAATGTTTCCCCTCTTGTCCCACTAGAAAACCTCTCTGCCTTAGTGATGGATGTGAAGTTTGGCAAAGCAGCATTTGCCAAAACAGAAGAGAGGGCTCAAGCCCTTGCACATACTCTGGTTGGTACATGCTTTGGTTTGGGTATCAAGGCAGTTGCCCTTATCACTAGCATGGATGCCCCTCTGGGAAGAGCAGTGGGGAATTCTGTGGAGGTGGCAGAGGCTATCAGCTGTCTGAATGGAAAGGGTCCTGAAGACTTGAAGGAACTAATCTTCACCTGGATTTGGGCATACCCGAATCCAGGCCTAGCACCAGTGACTCTAGACTTTGGTGGGAGGTGGGGGGTTCCATCAAAGCTGGGCTGGGTATATGGCTCAGCCAGTGGCCTATCTGCTGCACCCGAATCCAAGCCTAGCAAGCGACTCTCTTACCCTTGGGCTGGGCTGTTAAAAGGTCTAGCGAATAGTCATAGAGAGTGTGTGCACCTGACGTCATCAAATTCTCAAATCCAAAACAGAAAAGCAAGTAAAGATTTTATCCTCATCAGGCACAAGAGGTACCAAATTTATGGCTGGATGCTGGATGAAAAATGGAAATGGAAGATGCATGTCAATAGCCTTTTACAAAAACTGGGGCATCGCCTCTCAGTGTTCAACCGAATCTACCATATGCTCGACGAGAAAAGTCTTATAGCGTACTTTAATGGCCTTGTCCTACCACACCTAGATTATGCAGATGTCGTCTGGGGAGATCAGCCTGGTCTAACAACACAGATGAAACAATTGCAATCATTCCAAAATCGCATTGCAAAGAAGATTTCAAAGGGGAAAATGACATCAGCTGAGGCCCTAACATCGTTGCAGTGGGTCCCACTGCATGCGAGGCGTTTTGGACATCGGTGCTGTCTTGTGCAAGATGCAATGAAAGGAGAGATCCCCGAACATTTTGATGTGTTCAAATCTACCATGAACCAACAACATGGCTACAATACCCGAAATGGTGGTCATCTTCTTCATGCTTTGAAAAAAGCCGAATCAGAGGAAGCTGGAAAGAAACTCATTGCTGACAGCTTGAAAAATGGAAAAGCTTTACAAAAGTTCTGTGAAATGATAATAGCTCAAGGTGTCCAGCCAGTAGTGGCACAGAAGCTTTGTACAGCTGGGGCAGACCCCTTCAGCATCCTACCTCTTGCTTCTAAAAAATTAGAGCTTGTTGCCAAAAAGAGTGGCATTGTATCAGGAATTGATGCACTTGTAATGGCAAAAGTGACCCATGAGCTTGGTGCTGGGAGAATTACTGCCACAGACAAAGTTGATCATGGAGTTGGTTTAGTATTAGGGGTACGTGTTGGTCAGTTCGTAAGTCAAGGTGACAAGTGGGTTACAGTCTACCACAATGGCAATCTTGGTGATTTGCAAAAAGCCTCATTGGAAAAGGCTCTGGAGGTTGATGAAAATGGGGGTACAGTAGACCTTCCTGCTGTGTCAAGAATTATCGACATCATTGACAGTGAAAGGCGTCGTTCAATTTTTGTTTGTCAGTAG

Transcript

evm.model.contig_47256.7

ATGTCTTGTGAATATCGAATGCCAGACCTGATAAGTAAAAAGAGGGACGGAGACGAGCTATCGGAAGCTGAAATAAACCACTTTGTGAAGTCTGCAACGAATGGTGCCTGCGAAAGTCAGATCGGCGCAATGCTCATGGCCATGTACTTGAAGGGACTGAACCGTGATGAAACAGTGAGTCTTACCAAGGCAATGCTTTCGTCTGGAATATCTTTGCAGTGGCCCGAGGAATGGCAAGGCAGTGTTGCAGATAAACATTCTACAGGGGGAGTTGGTGACAAAGTCAGCCTCGCGCTAACTCCAGCTTTAGCAGTCTGCGGAGTGAAAGTACCGATGATTTCAGGTCGTGGTCTAGGCCACACTGGCGGAACCCTTGACAAGTTAGAGTCAATACCAGGCTTTCAAGTGAATCTGGACTCCACACAAATGTGCAGTGTTTTGGGAAAAGTTGGTTGTTGTATTGTGGGTCAGACGGAGGCACTGGTCCCAGCTGATCGGGTACTGTATGGTATAAGAGATGTGACAGCAACGGTAGATTCAATGCCTTTGATAACAAGTTCTATCTTATCAAAGAAAGCAGCTGATCCCAGTGCTTCAAAAAATGTTTCCCCTCTTGTCCCACTAGAAAACCTCTCTGCCTTAGTGATGGATGTGAAGTTTGGCAAAGCAGCATTTGCCAAAACAGAAGAGAGGGCTCAAGCCCTTGCACATACTCTGGTTGGTACATGCTTTGGTTTGGGTATCAAGGCAGTTGCCCTTATCACTAGCATGGATGCCCCTCTGGGAAGAGCAGTGGGGAATTCTGTGGAGGTGGCAGAGGCTATCAGCTGTCTGAATGGAAAGGGTCCTGAAGACTTGAAGGAACTAATCTTCACCTGGATTTGGGCATACCCGAATCCAGGCCTAGCACCAGTGACTCTAGACTTTGGTGGGAGGTGGGGGGTTCCATCAAAGCTGGGCTGGGTATATGGCTCAGCCAGTGGCCTATCTGCTGCACCCGAATCCAAGCCTAGCAAGCGACTCTCTTACCCTTGGGCTGGGCTGTTAAAAGGTCTAGCGAATAGTCATagagagtgtgtgcacctgacgtcatcaaattctcaaatccaaaacagaaaagcaagTAAagattttatcctcatcaggcacaagaggtaccaaatttatggctGGATGCTGGAtgaaaaatggaaatggaagATGCATGTCAATAGCCTTTTACAAAAACTGGGGCATCGCCTCTCAGTGTTCAACCGAATCTACCATATGCTCGACGAGAAAAGTCTTATAGCGTACTTTAATGGCCTTGTCCTACCACACCTAGATTATGCAGATGTCGTCTGGGGAGATCAGCCTGGTCTAACAACACAGATGAAACAATTGCAATCATTCCAAAATCGCATTGCAAAGAAGATTTCAAAGGGGAAAATGACATCAGCTGAGGCCCTAACATCGTTGCAGTGGGTCCCACTGCATGCGAGGCGTTTTGGACATCGGTGCTGTCTTGTGCAAGATGCAATGAAAGGAGAGATCCCCGAACATTTTGATGTGTTCAAATCTACCATGAACCAACAACATGGCTACAATACCCGAAATGGTGGTCATCTTCTTCATGCTTTGAAAAAAGCCGAATCAGAGGAAGCTGGAAAGAAACTCATTGCTGACAGCTTGAAAAATGGAAAAGCTTTACAAAAGTTCTGTGAAATGATAATAGCTCAAGGTGTCCAGCCAGTAGTGGCACAGAAGCTTTGTACAGCTGGGGCAGACCCCTTCAGCATCCTACCTCTTGCTTCTAAAAAATTAGAGCTTGTTGCCAAAAAGAGTGGCATTGTATCAGGAATTGATGCACTTGTAATGGCAAAAGTGACCCATGAGCTTGGTGCTGGGAGAATTACTGCCACAGACAAAGTTGATCATGGAGTTGGTTTAGTATTAGGGGTACGTGTTGGTCAGTTCGTAAGTCAAGGTGACAAGTGGGTTACAGTCTACCACAATGGCAATCTTGGTGATTTGCAAAAAGCCTCATTGGAAAAGGCTCTGGAGGTTGATGAAAATGGGGGTACAGTAGACCTTCCTGCTGTGTCAAGAATTATCGACATCATTGACAGTGAAAGGCGTCGTTCAATTTTTGTTTGTCAGTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00591 all species →	Glycos_transf_3	Glycosyl transferase family, a/b domain	Family	Interproscan
PF02885 all species →	Glycos_trans_3N	Glycosyl transferase family, helical bundle domain	Domain	Interproscan
PF07831 all species →	PYNP_C	Pyrimidine nucleoside phosphorylase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036566 all species →	Homologous_superfamily	Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily	Interproscan
IPR000312 all species →	Domain	Glycosyl transferase, family 3	Interproscan
IPR017459 all species →	Domain	Glycosyl transferase family 3, N-terminal domain	Interproscan
IPR017872 all species →	Conserved_site	Pyrimidine-nucleoside phosphorylase, conserved site	Interproscan
IPR013102 all species →	Domain	Pyrimidine nucleoside phosphorylase, C-terminal	Interproscan
IPR035902 all species →	Homologous_superfamily	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily	Interproscan
IPR036320 all species →	Homologous_superfamily	Glycosyl transferase family 3, N-terminal domain superfamily	Interproscan
IPR000053 all species →	Family	Thymidine/pyrimidine-nucleoside phosphorylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10515 all species →	THYMIDINE PHOSPHORYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006213 all species →	Biological Process	pyrimidine nucleoside metabolic process	Interproscan
GO:0016763 all species →	Molecular Function	pentosyltransferase activity	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0006206 all species →	Biological Process	pyrimidine nucleobase metabolic process	Interproscan
GO:0004645 all species →	Molecular Function	1,4-alpha-oligoglucan phosphorylase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00758	deoA, TYMP; thymidine phosphorylase	EC:2.4.2.4	Bladder cancer	ko05219	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.