Gene detail

Detailed information of evm.model.contig_47898.2 in Platygyra sinensis

Genomic Location: contig_47898:12780...13778
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21485 all species →	IF5A-like_N	Translation initiation factor 5A-like, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001884 all species →	Family	Translation elongation factor IF5A-like	Interproscan
IPR048670 all species →	Domain	Translation initiation factor 5A-like, N-terminal	Interproscan
IPR019769 all species →	PTM	Translation elongation factor, IF5A, hypusine site	Interproscan
IPR008991 all species →	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11673 all species →	TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003746 all species →	Molecular Function	translation elongation factor activity	Interproscan
GO:0006414 all species →	Biological Process	translational elongation	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0045901 all species →	Biological Process	positive regulation of translational elongation	Interproscan
GO:0045905 all species →	Biological Process	positive regulation of translational termination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_47898.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.