Gene detail

Detailed information of evm.model.contig_4814.4 in Platygyra sinensis

Genomic Location: contig_4814:27028...37822
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00703 all species →	Glyco_hydro_2	Glycosyl hydrolases family 2	Domain	Interproscan
PF02836 all species →	Glyco_hydro_2_C	Glycosyl hydrolases family 2, TIM barrel domain	Domain	Interproscan
PF02837 all species →	Glyco_hydro_2_N	Glycosyl hydrolases family 2, sugar binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036156 all species →	Homologous_superfamily	Beta-Galactosidase/glucuronidase domain superfamily	Interproscan
IPR006102 all species →	Domain	Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR006103 all species →	Domain	Glycoside hydrolase family 2, catalytic domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR006104 all species →	Domain	Glycosyl hydrolases family 2, sugar binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10066 all species →	BETA-GLUCURONIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004566 all species →	Molecular Function	beta-glucuronidase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0019391 all species →	Biological Process	obsolete glucuronoside catabolic process	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_4814.4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.