Gene detail

Detailed information of evm.model.contig_48535.15 in Platygyra sinensis

Genomic Location: contig_48535:139566...147942
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.contig_48535.15

ATGAATCAATTGTATGAGCAAGTCGTAGTAACCGGGACATGCGCATATCCACACCATTTAAGAGGAGTTAACATAAGCACACTTCATTCTGAGGATTTCCAATGTGCCGAGAGCTGCCAGACTCTCTTCATGCACGGACGCCGTTCTGATGGTCTTTACAATCTGCGCACACCGGACAACAGTCATTTTCGAGGGTGGTGCGACATGAGCGGTCCTAATGGCGGATGGGTTGTGTTTCAACAACGCATCAATGCTTCCGTTAACTTTACAAGAGGTTGGGCTTCATACAAAAAAGGTTTCGGCAGACATGGTTTGGAGTTCTGGCTTGGAAATCTTTACATACATAGTATAACTCGCAGGGGAGAGCACATTCTGAGAATTGAGAAATCCGCTTCTATTGATGGGCGCAAGCAAACATTTTTTGCTGAATATGATAGTTTCCGCCTGTCGAGTCCATTCGATAACTACAACCTTCATGTAGGGAAATACCAAGGAAACCTAAGCGACATTCTCTGGGATGCAAATAACTCTGCATTCTCCACTTGGGATCGTGATAACGACATGGTAAACGGATCATGCGCGCTCAGGAATAAAGGAGCCTGGTGGTACGGTAGAACTTGTAACATTCAAGACCTGAACAGCATGCTGGGAAAGGTTACCAAACAAGGTCTGGTTAAGGTTACTATGAAGACCAAGAAAGCTTTGCGAGTAAACCCTGCATATGACAACACCAGAGTTCTCTCCCCAGGCCTTTGCAATTCAAGTACAACTCTTGGTAGAGTTCAATGTGGTTGGCCAAGCATAACACAGCAGCAGTGCTTGTTGCGTGACTGTTGCTATGACAGCAATTCAGCTAGTGGAGTACCCAACTGCTTTGTCAAACCCCACTCTGTGTTCCTTGAGCGAATTGGTTGTTTCTCTGTGGAAAAAGATCTGATAAACCTGCTGAGGAATCAAGAGCCTCCGTTTGAAAGGTCCAATTTTGTCCAAGCCTGTGGCTCTATAGCTTTTTCGCGTGGTCGCAGGGTGTTTGCTGTACACAATGGAAGTGAATGTCTTGGTTATAATTATTCAGATGTCTCCGCTATATTACCGCGGCTTCACGTTTCACAAGGATGTCTGGGAGGAAGAGGAGGACAAAACGTGACAGATGTTTACCGCTTCACAATTTTTGTTACCAAGGTCACCAGACTCAGAGCGAGCTACGTGACATTCGAAAGTGTCCGTGTGGAGTGGAATCCAGTTCCAGAACTCTTCGTTCTCGGCTACAAAGTTCTGGTGCAAAATACCCATTTCAGTCAGTTCGTTGCCTGGAACGTGCACTCTACACTAATCGAAGGTCTCCATAGCAACACTCCTTACGTTATAGAGGTGTTTCCAGTTCACGGTTTATCAGTTGAAGGAATCCCTCCCGACAGTTCGCAAAGCATCATTGTTACTACAAAAGCAGATAGAGCCCCATCTCGAGCTCCTGACTTGGTAACCGCGTACAACACAAGTTCCACAAGTCTGGTGGTGAAATGGAGTCACGTGCCAAGGCAGTATTTCCAAGGAAAGCCTATTGGGTACATGATTATTTATTACCCAGTTGGTTTACAGAGTGATTTAAACTTTGTGAGTGTGAAAGACACGACAAACACCGCAACCCTTACGGAGCTGAATGTTTATACCGAGTATGCCATTAAAGTGTCTGCTGTGAGTCTTGGTGGAAAAGGGCCTGGAAAATGGACCTTCGCTTCAACAGATTATCCGTGCCGCAGATCACCTTGTCGTAACAACGGGACCTGTAAATCATCTAGTGATGGTGTGTTCTGTGATTGTCCCGAAAAATTCCGTGGTAACTTCTGTGAGATTTTGGTATCCGTCCCTACTGCACCGCCTGGTAAAGTCTTTGTAACAGCAGCAAGCCCTACAATACTGTTGGTCTCTTGGAGTAGTGTTCCGGAACAACATCGCCATGGAGATATTTCTCAATATAATGTATACATCAGCCTTGCCAATAAACAGAACGATTCCTTTTTAGTTCCTGTATCTGGATCAACCCAAAGCTATGTTGATGACCTCCAGATCTACACTCTTTACGTGATTCGTGTTTCGGGGGTAAACGACTTTGGAGAAGGACCCAAAAGTACGGCGTTTACAGCACGAACTATGGCAAGTGCTCCATCTCGAGCCCCCGACTTGGTAACCGCGTTCAACACAAGCTCCACAAGTCTGGTGGCAAAATGGAGTCACGTGCCAAAGCAGTATCTTCAAGGGAAGCCTATTGGATACAACATTATTTATTACCCACTTGGTTTGGAGAGGAATTTCCATTATTTGCAAATGAGCTACACGACAAACACCACAACCCTTACCGAGCTGGATGTTTATACCATGTATGTCATTAATGTGTCGGCAGTGAGTTCTGGAGGAGTGGGGCCTGCAAAATCGACCTTCGCTTCAACAGATAATCCGTGTCGCAGTTCACCATGTCTTAACAGTGGAACTTGTCAATTATCTGGTGATAATCAGTTGTTCTGTGATTGTCCTGAGAAATTCGATGGTGACTTCTGTGAGATTTTTGTATCCTCCCCCACTGCACCGCCTGGTAAAGTCATTGTAACAGCAGCAAGCCCTACAATACTGTTGGTCTCTTGGAGTAGTGTTCCGGAACAACATCGCCATGGAGATATTTCTCAATATAATGTATATATCAGCCTTGCCAATAAACGGAACGATTCCTTTGTAGTTCCTGTATCTGGATCAACCCAAAAATATATCGATGACCTCCAGATCTACACTCTTTACGTGATTCGTGTTTCGGGACTAAACGACATTGGAGAAGGACCCAAAAGTACGGCGTTTACAGTACGAACTATGGCAAACGCTCCATCTCGATCTCCAGAATTGGTAACCGCATACAACACAAGCTCCACAAGTCTGGTGGCAAAATGGAGTCACGTGCCAAAGCAGTATCTTCAAGGGAAGCCTATTGGATACAACATTATTTATTACCCACTTGGTTTGGAGAAGAATTTCCATTATTTGCAAGTGAGCTACTCGACAAACACCACAACCCTTACCGAGCTGGATGTTTATACCATGTATGCCATTAATGTGTCGGCAGTGAGTTCTGGAGGAGTGGGGCCGGCCAAAGCGACCTTCGCTTCAACAGGTTCAATTACAATACTTTTCTTTCACTGTTTAGTAATTGACTCACTTTTCTAA

Transcript

evm.model.contig_48535.15

ATGAATCAATTGTATGAGCAAGTCGTAGTAACCGGGACATGCGCATATCCACACCATTTAAGAGGAGTTAACATAAGCACACTTCATTCTGAGGATTTCCAATGTGCCGAGAGCTGCCAGACTCTCTTCATGCACGGACGCCGTTCTGATGGTCTTTACAATCTGCGCACACCGGACAACAGTCATTTTCGAGGGTGGTGCGACATGAGCGGTCCTAATGGCGGATGGGTTGTGTTTCAACAACGCATCAATGCTTCCGTTAACTTTACAAGAGGTTGGGCTTCATACAAAAAAGGTTTCGGCAGACATGGTTTGGAGTTCTGGCTTGGAAATCTTTACATACATAGTATAACTCGCAGGGGAGAGCACATTCTGAGAATTGAGAAATCCGCTTCTATTGATGGGCGCAAGCAAACATTTTTTGCTGAATATGATAGTTTCCGCCTGTCGAGTCCATTCGATAACTACAACCTTCATGTAGGGAAATACCAAGGAAACCTAAGCGACATTCTCTGGGATGCAAATAACTCTGCATTCTCCACTTGGGATCGTGATAACGACATGGTAAACGGATCATGCGCGCTCAGGAATAAAGGAGCCTGGTGGTACGGTAGAACTTGTAACATTCAAGACCTGAACAGCATGCTGGGAAAGGTTACCAAACAAGGTCTGGTTAAGGTTACTATGAAGACCAAGAAAGCTTTGCGAGTAAACCCTGCATATGACAACACCAGAGTTCTCTCCCCAGGCCTTTGCAATTCAAGTACAACTCTTGGTAGAGTTCAATGTGGTTGGCCAAGCATAACACAGCAGCAGTGCTTGTTGCGTGACTGTTGCTATGACAGCAATTCAGCTAGTGGAGTACCCAACTGCTTTGTCAAACCCCACTCTGTGTTCCTTGAGCGAATTGGTTGTTTCTCTGTGGAAAAAGATCTGATAAACCTGCTGAGGAATCAAGAGCCTCCGTTTGAAAGGTCCAATTTTGTCCAAGCCTGTGGCTCTATAGCTTTTTCGCGTGGTCGCAGGGTGTTTGCTGTACACAATGGAAGTGAATGTCTTGGTTATAATTATTCAGATGTCTCCGCTATATTACCGCGGCTTCACGTTTCACAAGGATGTCTGGGAGGAAGAGGAGGACAAAACGTGACAGATGTTTACCGCTTCACAAtttttGTTACCAAGGTCACCAGACTCAGAGCGAGCTACGTGACATTCGAAAGTGTCCGTGTGGAGTGGAATCCAGTTCCAGAACTCTTCGTTCTCGGCTACAAAGTTCTGGTGCAAAATACCCATTTCAGTCAGTTCGTTGCCTGGAACGTGCACTCTACACTAATCGAAGGTCTCCATAGCAACACTCCTTACGTTATAGAGGTGTTTCCAGTTCACGGTTTATCAGTTGAAGGAATCCCTCCCGACAGTTCGCAAAGCATCATTGTTACTACAAAAGCAGATAGAGCCCCATCTCGAGCTCCTGACTTGGTAACCGCGTACAACACAAGTTCCACAAGTCTGGTGGTGAAATGGAGTCACGTGCCAAGGCAGTATTTCCAAGGAAAGCCTATTGGGTACATGATTATTTATTACCCAGTTGGTTTACAGAGTGATTTAAACTTTGTGAGTGTGAAAGACACGACAAACACCGCAACCCTTACGGAGCTGAATGTTTATACCGAGTATGCCATTAAAGTGTCTGCTGTGAGTCTTGGTGGAAAAGGGCCTGGAAAATGGACCTTCGCTTCAACAGATTATCCGTGCCGCAGATCACCTTGTCGTAACAACGGGACCTGTAAATCATCTAGTGATGGTGTGTTCTGTGATTGTCCCGAAAAATTCCGTGGTAACTTCTGTGAGATTTTGGTATCCGtccctacTGCACCGCCTGGTAAAGTCTTTGTAACAGCAGCAAGCCCTACAATACTGTTGGTCTCTTGGAGTAGTGTTCCGGAACAACATCGCCATGGAGATATTTCTCAATATAATGTATACATCAGCCTTGCCAATAAACAGAACGATTCCTTTTTAGTTCCTGTATCTGGATCAACCCAAAGCTATGTTGATGACCTCCAGATCTACACTCTTTACGTGATTCGTGTTTCGGGGGTAAACGACTTTGGAGAAGGACCCAAAAGTACGGCGTTTACAGCACGAACTATGGCAAGTGCTCCATCTCGAGCCCCCGACTTGGTAACCGCGTTCAACACAAGCTCCACAAGTCTGGTGGCAAAATGGAGTCACGTGCCAAAGCAGTATCTTCAAGGGAAGCCTATTGGATACAACATTATTTATTACCCACTTGGTTTGGAGAGGAATTTCCATTATTTGCAAATGAGCTACACGACAAACACCACAACCCTTACCGAGCTGGATGTTTATACCATGTATGTCATTAATGTGTCGGCAGTGAGTTCTGGAGGAGTGGGGCCTGCAAAATCGACCTTCGCTTCAACAGATAATCCGTGTCGCAGTTCACCATGTCTTAACAGTGGAACTTGTCAATTATCTGGTGATAATCAGTTGTTCTGTGATTGTCCTGAGAAATTCGATGGTGACTTCTGTGAGATTTTTGTATCCTCCCCCACTGCACCGCCTGGTAAAGTCATTGTAACAGCAGCAAGCCCTACAATACTGTTGGTCTCTTGGAGTAGTGTTCCGGAACAACATCGCCATGGAGATATTTCTCAATATAATGTATATATCAGCCTTGCCAATAAACGGAACGATTCCTTTGTAGTTCCTGTATCTGGATCAACCCAAAAATATATCGATGACCTCCAGATCTACACTCTTTACGTGATTCGTGTTTCGGGACTAAACGACATTGGAGAAGGACCCAAAAGTACGGCGTTTACAGTACGAACTATGGCAAACGCTCCATCTCGATCTCCAGAATTGGTAACCGCATACAACACAAGCTCCACAAGTCTGGTGGCAAAATGGAGTCACGTGCCAAAGCAGTATCTTCAAGGGAAGCCTATTGGATACAACATTATTTATTACCCACTTGGTTTGGAGAAGAATTTCCATTATTTGCAAGTGAGCTACTCGACAAACACCACAACCCTTACCGAGCTGGATGTTTATACCATGTATGCCATTAATGTGTCGGCAGTGAGTTCTGGAGGAGTGGGGCCGGCCAAAGCGACCTTCGCTTCAACAGGTTCAATTACAATACTTTTCTTTCACTGTTTAGTAATTGACTCACTTTTCTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00088 all species →	Trefoil	Trefoil (P-type) domain	Domain	Interproscan
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF01463 all species →	LRRCT	Leucine rich repeat C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044913 all species →	Homologous_superfamily	P-type trefoil domain superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR000519 all species →	Domain	P-type trefoil domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050991 all species →	Family	Extracellular Matrix Regulatory Proteins	Interproscan
IPR000483 all species →	Domain	Cysteine-rich flanking region, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46708 all species →	TENASCIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_48535.15.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.