Gene detail

Detailed information of evm.model.contig_50068.1 in Platygyra sinensis

Genomic Location: contig_50068:4873...10044
NR annotation: no NCBI-NR hit recorded
Species Platygyra sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00193 all species →	Xlink	Extracellular link domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003609 all species →	Domain	PAN/Apple domain	Interproscan
IPR043210 all species →	Family	CD44 antigen-like	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR000538 all species →	Domain	Link domain	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10225 all species →	HYALURONAN RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005540 all species →	Molecular Function	hyaluronic acid binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.contig_50068.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.